Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Reverse (-)

42823716 .. 42828178

Gene Structure 4463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG224200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAGCATGTCAGCCACTTTCTGTATTACAGGATGGCTAGCCATCTATTTCTCTGAGGGAGCTTTGTCACTTGACATAGGAAGGTTTTTAACTGGATATGGAATTGGAGTTTTCTCTTATGTGATCCCAATATTTATAGCAGAAATCGCGCCCAAAAATCTCCGTGGAGGACTTACAACATTAAATCAGCTCATGATTGTTACTGGATCCTCAGTTTCATTTGTATTAGGAACAATTATAAGTTGGAGGACACTAGCTATAGCTGGAATCCTTCCCTGCATTGTCTTGCTTGTTGGTCTATGGTTTGTTCCCGAGTCCCCTAGATGGCTGGCAAAGATTGGCCATGAGAAAGAGTTCCAAGTTGCACTGCAAAGACTTCGCGGAAAATATGCAGATATATCTGATGAAACAGCTGAAATAAAAGAATATATTGTCACTCTACAAAGCCTTCCAAAATCTGGAGTGTTGGATTTGTTTCAAACCAAATACATTCGTTTGGTGACTATTGGAGTTGGATTGATGGTATTTCAACAGTTTGGAGGTATTAATGGGATAGGATTCTATGCAAGTCAAACCTTTGAAGAAGCTGGTATCTCAAGCAAAATTGGAACCATAGCTTATGCATGTGTTCAGGTCCCAATTACTGTAGTGGGAGCAATGCTTATCGATAGGTCAGGAAGGAGACCTCTTATAATGGTGTCAGCAACTGGAACATTCCTAGGCTGTTTTCTAGCAGGAACTTCTTTCTTTCTTAAGGAATATGGTTTGCTGCTTAATTGGGTACCAACAATAGCTGTGTCCGGTGTGCTGATTTACATTGCATTTTTCTCAATCGGAATGGGAGCAGTTCCTTGGGTGATAATGTCTGAGATCTTTCCAATCCATGTGAAAGGAGCTGCTGGTAGCTTAGTGGTGCTTGTGAACTGGTTGGGTGCTTGGGCAGTCTCTTATACTTACAACTTCCTTATGAGCTGGAGTTCCTCAAGAACTTATTATATGTATTCTGGATTCTCTTTGTTGACTATCCTATTTGTGGCAAAGTTGGTGCCAGAGACCAAAGGAAAAACACTAGAAGAAATTCAGGCATGCATCAAGTCAGATAGAAGAGAACAAGATATCTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

375

Amino Acids

41.09

Weight (kDa)

8.69

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	2 - 361	8.6e-80	Sugar (and other) transporter
MFS_1	PF07690	5 - 312	6.9e-15	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	239, 692
Acc65I	GGTACC	1 cut(s)	781
AccB1I	GGYRCC	2 cut(s)	781, 1045
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccII	CGCG	2 cut(s)	149, 381
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	118, 201, 214
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	1077
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	324, 458, 1033
AflII	CTTAAG	1 cut(s)	752
AgsI	TTSAA	4 cut(s)	479, 530, 581, 1123
Alw26I	GTCTC	3 cut(s)	676, 949, 1046
AlwI	GGATC	3 cut(s)	118, 201, 214
AlwNI	CAGNNNCTG	1 cut(s)	707
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	769, 896
ApoI	RAATTY	1 cut(s)	1077
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	2 cut(s)	353, 1077
Asp718I	GGTACC	1 cut(s)	781
AspA2I	CCTAGG	1 cut(s)	718
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	2 cut(s)	511, 868
AsuNHI	GCTAGC	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	634
AvrII	CCTAGG	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	206
BanI	GGYRCC	2 cut(s)	781, 1045
BbvI	GCAGC	2 cut(s)	756, 883
BccI	CCATC	4 cut(s)	27, 50, 318, 514
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BcoDI	GTCTC	3 cut(s)	676, 949, 1046
BfaI	CTAG	6 cut(s)	38, 254, 321, 719, 731, 1070
BfmI	CTRYAG	2 cut(s)	258, 645
BfrI	CTTAAG	1 cut(s)	752
BglII	AGATCT	1 cut(s)	870
BisI	GCNGC	2 cut(s)	770, 897
BlnI	CCTAGG	1 cut(s)	718
BlsI	GCNGC	2 cut(s)	771, 898
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	5 cut(s)	208, 610, 636, 783, 1047
BmsI	GCATC	1 cut(s)	1098
BmtI	GCTAGC	1 cut(s)	41
BpmI	CTGGAG	2 cut(s)	480, 994
BpuEI	CTTGAG	2 cut(s)	580, 967
Bsa29I	ATCGAT	1 cut(s)	666
BsaI	GGTCTC	2 cut(s)	676, 1046
BsaJI	CCNNGG	3 cut(s)	163, 718, 851
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 458, 1033
Bse1I	ACTGG	4 cut(s)	97, 208, 712, 929
Bse3DI	GCAATG	2 cut(s)	663, 816
BseCI	ATCGAT	1 cut(s)	666
BseDI	CCNNGG	3 cut(s)	163, 718, 851
BseGI	GGATG	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	324, 458, 1033
BseMI	GCAATG	2 cut(s)	663, 816
BseMII	CTCAG	3 cut(s)	45, 225, 858
BseNI	ACTGG	4 cut(s)	97, 208, 712, 929
BseXI	GCAGC	2 cut(s)	756, 883
Bsh1236I	CGCG	2 cut(s)	149, 381
BshFI	GGCC	1 cut(s)	342
BshNI	GGYRCC	2 cut(s)	781, 1045
BshVI	ATCGAT	1 cut(s)	666
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	801
BslFI	GGGAC	2 cut(s)	301, 620
BslI	CCNNNNNNNGG	3 cut(s)	324, 458, 1033
BsmAI	GTCTC	3 cut(s)	676, 949, 1046
BsmFI	GGGAC	2 cut(s)	301, 620
BsnI	GGCC	1 cut(s)	342
Bso31I	GGTCTC	2 cut(s)	676, 1046
BsoBI	CYCGRG	1 cut(s)	311
Bsp143I	GATC	3 cut(s)	123, 206, 870
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	46, 224, 859
BspDI	ATCGAT	1 cut(s)	666
BspFNI	CGCG	2 cut(s)	149, 381
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	5 cut(s)	208, 610, 636, 783, 1047
BspOI	GCTAGC	1 cut(s)	41
BspPI	GGATC	3 cut(s)	118, 201, 214
BspT107I	GGYRCC	2 cut(s)	781, 1045
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	2 cut(s)	676, 1046
BsrDI	GCAATG	2 cut(s)	663, 816
BsrI	ACTGG	4 cut(s)	97, 208, 712, 929
BssECI	CCNNGG	3 cut(s)	163, 718, 851
BssMI	GATC	3 cut(s)	123, 206, 870
BssT1I	CCWWGG	2 cut(s)	718, 851
Bst4CI	ACNGT	2 cut(s)	534, 646
Bst6I	CTCTTC	1 cut(s)	1099
BstAFI	CTTAAG	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	39, 330, 1087
BstDEI	CTNAG	4 cut(s)	54, 211, 867, 907
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	2 cut(s)	149, 381
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	126, 209, 873
BstMAI	GTCTC	3 cut(s)	676, 949, 1046
BstMBI	GATC	3 cut(s)	123, 206, 870
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	3 cut(s)	10, 627, 1089
BstSFI	CTRYAG	2 cut(s)	258, 645
BstUI	CGCG	2 cut(s)	149, 381
BstV1I	GCAGC	2 cut(s)	756, 883
BstX2I	RGATCY	2 cut(s)	206, 870
BstYI	RGATCY	2 cut(s)	206, 870
Bsu15I	ATCGAT	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	342
BsuTUI	ATCGAT	1 cut(s)	666
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	38
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	365
Cac8I	GCNNGC	3 cut(s)	39, 330, 1087
CaiI	CAGNNNCTG	1 cut(s)	707
CciI	TCATGA	1 cut(s)	192
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	634
ClaI	ATCGAT	1 cut(s)	666
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	6 cut(s)	7, 193, 344, 624, 884, 1086
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	4 cut(s)	54, 211, 867, 907
DpnI	GATC	3 cut(s)	125, 208, 872
DpnII	GATC	3 cut(s)	123, 206, 870
EaeI	YGGCCR	1 cut(s)	340
Eam1104I	CTCTTC	1 cut(s)	1099
EarI	CTCTTC	1 cut(s)	1099
Eco130I	CCWWGG	2 cut(s)	718, 851
Eco31I	GGTCTC	2 cut(s)	676, 1046
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	1117
EcoT14I	CCWWGG	2 cut(s)	718, 851
EcoT22I	ATGCAT	2 cut(s)	625, 1091
ErhI	CCWWGG	2 cut(s)	718, 851
FaeI	CATG	6 cut(s)	10, 196, 347, 627, 887, 1089
FaqI	GGGAC	2 cut(s)	301, 620
FatI	CATG	6 cut(s)	6, 192, 343, 623, 883, 1085
Fnu4HI	GCNGC	2 cut(s)	770, 897
FokI	GGATG	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	770, 897
FspBI	CTAG	6 cut(s)	38, 254, 321, 719, 731, 1070
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	770, 897
GsuI	CTGGAG	2 cut(s)	480, 994
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	801
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	6 cut(s)	10, 196, 347, 627, 887, 1089
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	1020
HindII	GTYRAC	1 cut(s)	1020
HinfI	GANTC	4 cut(s)	267, 314, 558, 1008
HpaII	CCGG	1 cut(s)	801
HphI	GGTGA	2 cut(s)	511, 868
Hpy166II	GTNNAC	2 cut(s)	922, 1020
Hpy188I	TCNGA	5 cut(s)	55, 403, 836, 868, 1099
Hpy188III	TCNNGA	7 cut(s)	193, 311, 459, 675, 984, 1005, 1120
Hpy8I	GTNNAC	2 cut(s)	922, 1020
HpyAV	CCTTC	4 cut(s)	75, 281, 458, 672
HpyCH4III	ACNGT	2 cut(s)	534, 646
HpyCH4V	TGCA	8 cut(s)	279, 365, 370, 392, 566, 623, 821, 1089
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	4 cut(s)	54, 211, 867, 907
Hsp92II	CATG	6 cut(s)	10, 196, 347, 627, 887, 1089
HspAI	GCGC	1 cut(s)	149
KpnI	GGTACC	1 cut(s)	785
Kzo9I	GATC	3 cut(s)	123, 206, 870
LmnI	GCTCC	4 cut(s)	59, 653, 842, 893
Lsp1109I	GCAGC	2 cut(s)	756, 883
LweI	GCATC	1 cut(s)	1098
MaeI	CTAG	6 cut(s)	38, 254, 321, 719, 731, 1070
MaeIII	GTNAC	4 cut(s)	66, 199, 433, 499
MalI	GATC	3 cut(s)	125, 208, 872
MboI	GATC	3 cut(s)	123, 206, 870
MboII	GAAGA	3 cut(s)	593, 1085, 1116
MflI	RGATCY	2 cut(s)	206, 870
MlsI	TGGCCA	1 cut(s)	342
MluCI	AATT	6 cut(s)	102, 234, 603, 639, 775, 1077
MluNI	TGGCCA	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	3 cut(s)	224, 447, 493
MnlI	CCTC	7 cut(s)	49, 161, 220, 240, 533, 696, 991
Mox20I	TGGCCA	1 cut(s)	342
Mph1103I	ATGCAT	2 cut(s)	625, 1091
MroXI	GAANNNNTTC	2 cut(s)	353, 1077
MscI	TGGCCA	1 cut(s)	342
MseI	TTAA	5 cut(s)	89, 182, 546, 753, 774
Msp20I	TGGCCA	1 cut(s)	342
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	1 cut(s)	801
MvnI	CGCG	2 cut(s)	149, 381
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeII	GATC	3 cut(s)	123, 206, 870
NheI	GCTAGC	1 cut(s)	37
NlaIII	CATG	6 cut(s)	10, 196, 347, 627, 887, 1089
NlaIV	GGNNCC	5 cut(s)	208, 610, 636, 783, 1047
NmuCI	GTSAC	3 cut(s)	66, 433, 499
NsiI	ATGCAT	2 cut(s)	625, 1091
NspI	RCATGY	3 cut(s)	10, 627, 1089
PaeI	GCATGC	1 cut(s)	1089
PagI	TCATGA	1 cut(s)	192
PdmI	GAANNNNTTC	2 cut(s)	353, 1077
PfeI	GAWTC	3 cut(s)	267, 558, 1008
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	2 cut(s)	771, 898
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	634
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	2 cut(s)	239, 692
Psp5II	RGGWCCY	1 cut(s)	634
PspN4I	GGNNCC	5 cut(s)	208, 610, 636, 783, 1047
PspPI	GGNCC	1 cut(s)	634
PspPPI	RGGWCCY	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	2 cut(s)	206, 870
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
SaqAI	TTAA	5 cut(s)	89, 182, 546, 753, 774
SatI	GCNGC	2 cut(s)	770, 897
Sau3AI	GATC	3 cut(s)	123, 206, 870
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	323
SfaNI	GCATC	1 cut(s)	1098
SfcI	CTRYAG	2 cut(s)	258, 645
SinI	GGWCC	1 cut(s)	634
SmlI	CTYRAG	3 cut(s)	595, 752, 982
SmoI	CTYRAG	3 cut(s)	595, 752, 982
SphI	GCATGC	1 cut(s)	1089
Sse9I	AATT	6 cut(s)	102, 234, 603, 639, 775, 1077
SsiI	CCGC	1 cut(s)	381
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	6 cut(s)	38, 254, 321, 719, 731, 1070
StyI	CCWWGG	2 cut(s)	718, 851
TaaI	ACNGT	2 cut(s)	534, 646
TaqI	TCGA	1 cut(s)	666
TasI	AATT	6 cut(s)	102, 234, 603, 639, 775, 1077
TfiI	GAWTC	3 cut(s)	267, 558, 1008
Tru1I	TTAA	5 cut(s)	89, 182, 546, 753, 774
Tru9I	TTAA	5 cut(s)	89, 182, 546, 753, 774
TscAI	CASTG	1 cut(s)	372
TseFI	GTSAC	3 cut(s)	66, 433, 499
TseI	GCWGC	2 cut(s)	769, 896
Tsp45I	GTSAC	3 cut(s)	66, 433, 499
TspDTI	ATGAA	2 cut(s)	207, 420
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	372
Van91I	CCANNNNNTGG	1 cut(s)	458
Vha464I	CTTAAG	1 cut(s)	752
VpaK11BI	GGWCC	1 cut(s)	634
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	1 cut(s)	1077
XceI	RCATGY	3 cut(s)	10, 627, 1089
XmaJI	CCTAGG	1 cut(s)	718
XmnI	GAANNNNTTC	2 cut(s)	353, 1077
XspI	CTAG	6 cut(s)	38, 254, 321, 719, 731, 1070
Zsp2I	ATGCAT	2 cut(s)	625, 1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.