Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004465

Physical Location & Seq

Genomic Coordinates Forward (+)

20722265 .. 20725900

Gene Structure 3636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007760

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCAATTGGGCAGTCGACAGACATTGAAAATGGGGGTATTAATAGGCATGAGGAGTTGGAGCAGCCTTTCATTCAGCCAAAGAGAGTTGTTGCTCATGAAGATGGTGACAACGGGAATACTATCAAAAATGGATCAATTGGGATGGTTTTGCTTAGCACATGCGTTGCAGTTTGCGGCTCTTTCCAATTTGGAATATGCGTGGGCTACTCAGCACCCAGTCAATCTGCTATCAGGAAAGATCTTCGTCTCTCTATAATTGAGGGAGCTATATTACTTGATATAGGAAGGTTTCTAACTGGTTATGGAATTTCATCTTTCTCGTATGTGCTCTTCATTATCCTTGGAGCATCGTTTACGTTCATAATAGGAACAATCATATCCTGGAGAACATTATCTCTAATTGCAATTTTGCCTTGCATTATCCTGGTTTTGGGTCAATGGTTTATTCCAGAGTCACCTAGATGGCTGGCAAAGGTCGGCCGAGAGGAAGAATTTGAAGTTGCACTACAGAGACTCCATGGAAAGGATGCTGATGTATCTGGTGAAAAGGCGGAAATTCAAGAATATATAGTTACTTCACAAAGTCTTCCGAAAGTCAATATCTTGGATTTGTTTCAAAGAAGATATATTCGATCTGTCATAATTGGGGTTGGATTAATGGTGTTTCAACAATTTGCTGGTATTAATGGAGTACAATTTTATGCAAGCGAAACCTTTGAAGCAGCTGGATTTTCAGGCAGTATTGGAACCACAGCTTATGCATGTCTTCAGGTCCCAATTACTCTATTAGGAGCATTTCTAATGGATAAGTCAGGAAGGAGAGTTCTCGTAATGGTTTCAGCAGCTGGAATGTTCATAGGCTCTATTCTTGTTGGAATTTCTTTCTCTCTGAAGGGAGATGGTTTGCTACTGGATTGGGTACCGATACTTGCTGTGTCCGGTGTGCTGGTTTACGTTGCATTTTTTTCGATTGGTATGGGAGCAGGCCCTTGGGTGATAATGTCCGAGATTTTCCCAATTAATGTGAAGGGAGTGGGTGGAAGCTTGGTGGTGTTTGTGAACTGGTCTGGTGCTTGGGTAGTTTCCTATACTTACAACTCTCTTATGAACTGGAGTTCCTCAGGAACATACTACCTGTATGGTGCAGTCTGTGTCTTGACAATCCTATTTGTGGCCAAGGTAGTCCCAGAGACCAAAGGAAAAACGCTAGAAGAAATTCAAGCATCACTCGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

414

Amino Acids

44.68

Weight (kDa)

5.38

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	101 - 358	1.1e-09	Major Facilitator Superfamily
Sugar_tr	PF00083	107 - 409	1.9e-64	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18840
fragaria_vesca	FvH4_4g16900 FvH4_4g16900 FvH4_4g16900
malus_domestica	MD13G1175900.v1.1
prunus_persica	Prupe.1G144800_v2.0.a1 Prupe.1G144800_v2.0.a1 Prupe.1G144900_v2.0.a1
pyrus_communis	pycom13g15160
rosa_chinensis	RchiOBHm_Chr4g0420471 RchiOBHm_Chr4g0420481
rosa_laevigata	RLG00000007758 RLG00000007760
rosa_multiflora	Rmu_sc0002248.1_g000042 Rmu_sc0020995.1_g000009
rosa_roxburghii	Rroxscaffold_5G00363090 Rroxscaffold_5G00363100
rosa_rugosa	Rorug04G0164000 Rorug04G0164000 Rorug04G0164100 Rorug04G0164200 Rorug04G0164200
rosa_samantha	Rh4AG225700 Rh4AG225800 Rh4BG228300 Rh4BG228400 Rh4CG240000 Rh4CG240100 Rh4DG224100 Rh4DG224200
rosa_wichuraiana	Rw4G019480 Rw4G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	922
AccB1I	GGYRCC	1 cut(s)	922
AccI	GTMKAC	1 cut(s)	17
AciI	CCGC	2 cut(s)	177, 554
AclWI	GGATC	2 cut(s)	142, 1229
AcoI	YGGCCR	2 cut(s)	481, 1176
AcsI	RAATTY	5 cut(s)	309, 494, 558, 879, 1218
AcuI	CTGAAG	2 cut(s)	755, 914
AfaI	GTAC	2 cut(s)	696, 924
AfiI	CCNNNNNNNGG	3 cut(s)	433, 526, 1174
AgsI	TTSAA	7 cut(s)	29, 500, 563, 620, 671, 722, 1223
AjnI	CCWGG	2 cut(s)	383, 426
AloI	GAACNNNNNNTCC	4 cut(s)	810, 842, 1103, 1135
AluBI	AGCT	5 cut(s)	269, 728, 758, 848, 1047
AluI	AGCT	5 cut(s)	269, 728, 758, 848, 1047
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	3 cut(s)	254, 508, 1187
AlwI	GGATC	2 cut(s)	142, 1229
AlwNI	CAGNNNCTG	1 cut(s)	848
AoxI	GGCC	3 cut(s)	481, 988, 1176
ApeKI	GCWGC	3 cut(s)	64, 725, 845
ApoI	RAATTY	5 cut(s)	309, 494, 558, 879, 1218
AseI	ATTAAT	4 cut(s)	42, 659, 687, 1023
Asp700I	GAANNNNTTC	1 cut(s)	1218
Asp718I	GGTACC	1 cut(s)	922
AspS9I	GGNCC	2 cut(s)	775, 989
AsuHPI	GGTGA	4 cut(s)	119, 450, 557, 1009
AvaII	GGWCC	1 cut(s)	775
AxyI	CCTNAGG	1 cut(s)	1123
BalI	TGGCCA	1 cut(s)	1178
BanI	GGYRCC	1 cut(s)	922
BarI	GAAGNNNNNNTAC	4 cut(s)	317, 349, 492, 524
BbsI	GAAGAC	2 cut(s)	581, 761
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	76, 737, 857
BccI	CCATC	4 cut(s)	98, 139, 459, 896
BcgI	CGANNNNNNTGC	2 cut(s)	951, 985
BciT130I	CCWGG	2 cut(s)	385, 428
BcoDI	GTCTC	3 cut(s)	254, 508, 1187
BfaI	CTAG	2 cut(s)	462, 1211
BfmI	CTRYAG	1 cut(s)	509
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	4 cut(s)	65, 178, 726, 846
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	4 cut(s)	66, 179, 727, 847
Bme1390I	CCNGG	2 cut(s)	385, 428
Bme18I	GGWCC	1 cut(s)	775
BmgT120I	GGNCC	2 cut(s)	775, 989
BmiI	GGNNCC	3 cut(s)	751, 777, 924
BmrFI	CCNGG	2 cut(s)	385, 428
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	3 cut(s)	359, 520, 1235
BmuI	ACTGGG	1 cut(s)	213
BpiI	GAAGAC	2 cut(s)	581, 761
BpmI	CTGGAG	2 cut(s)	406, 1135
Bpu1102I	GCTNAGC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	1187
BsaJI	CCNNGG	4 cut(s)	343, 520, 992, 1179
BsaWI	WCCGGW	1 cut(s)	941
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 526, 1174
Bse1I	ACTGG	5 cut(s)	219, 304, 918, 1070, 1118
Bse21I	CCTNAGG	1 cut(s)	1123
BseBI	CCWGG	2 cut(s)	385, 428
BseDI	CCNNGG	4 cut(s)	343, 520, 992, 1179
BseGI	GGATG	2 cut(s)	150, 535
BseLI	CCNNNNNNNGG	3 cut(s)	433, 526, 1174
BseMII	CTCAG	2 cut(s)	225, 1137
BseNI	ACTGG	5 cut(s)	219, 304, 918, 1070, 1118
BseRI	GAGGAG	1 cut(s)	68
BseX3I	CGGCCG	1 cut(s)	481
BseXI	GCAGC	3 cut(s)	76, 737, 857
BsgI	GTGCAG	1 cut(s)	1167
Bsh1285I	CGRYCG	1 cut(s)	484
BshFI	GGCC	3 cut(s)	483, 990, 1178
BshNI	GGYRCC	1 cut(s)	922
BsiEI	CGRYCG	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	942
BslFI	GGGAC	2 cut(s)	761, 1172
BslI	CCNNNNNNNGG	3 cut(s)	433, 526, 1174
BsmAI	GTCTC	3 cut(s)	254, 508, 1187
BsmBI	CGTCTC	1 cut(s)	254
BsmFI	GGGAC	2 cut(s)	761, 1172
BsnI	GGCC	3 cut(s)	483, 990, 1178
Bso31I	GGTCTC	1 cut(s)	1187
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	134, 241, 635, 1234
Bsp1720I	GCTNAGC	1 cut(s)	155
Bsp19I	CCATGG	1 cut(s)	520
BspACI	CCGC	2 cut(s)	177, 554
BspANI	GGCC	3 cut(s)	483, 990, 1178
BspCNI	CTCAG	2 cut(s)	224, 1136
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	3 cut(s)	751, 777, 924
BspPI	GGATC	2 cut(s)	142, 1229
BspQI	GCTCTTC	1 cut(s)	338
BspT107I	GGYRCC	1 cut(s)	922
BspTNI	GGTCTC	1 cut(s)	1187
BsrI	ACTGG	5 cut(s)	219, 304, 918, 1070, 1118
BssECI	CCNNGG	4 cut(s)	343, 520, 992, 1179
BssMI	GATC	4 cut(s)	134, 241, 635, 1234
BssT1I	CCWWGG	4 cut(s)	343, 520, 992, 1179
Bst2UI	CCWGG	2 cut(s)	385, 428
Bst6I	CTCTTC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	471, 709, 988
BstDEI	CTNAG	3 cut(s)	155, 211, 1123
BstDSI	CCRYGG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	150, 535
BstKTI	GATC	4 cut(s)	137, 244, 638, 1237
BstMAI	GTCTC	3 cut(s)	254, 508, 1187
BstMBI	GATC	4 cut(s)	134, 241, 635, 1234
BstMCI	CGRYCG	1 cut(s)	484
BstNI	CCWGG	2 cut(s)	385, 428
BstNSI	RCATGY	2 cut(s)	165, 768
BstSCI	CCNGG	2 cut(s)	383, 426
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	76, 737, 857
BstV2I	GAAGAC	2 cut(s)	581, 761
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	481
Bsu36I	CCTNAGG	1 cut(s)	1123
BsuRI	GGCC	3 cut(s)	483, 990, 1178
BtgI	CCRYGG	1 cut(s)	520
BtsCI	GGATG	2 cut(s)	150, 535
Cac8I	GCNNGC	3 cut(s)	471, 709, 988
CaiI	CAGNNNCTG	1 cut(s)	848
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	775, 989
Csp6I	GTAC	2 cut(s)	695, 923
CviAII	CATG	6 cut(s)	50, 98, 162, 521, 765, 1239
CviQI	GTAC	2 cut(s)	695, 923
DdeI	CTNAG	3 cut(s)	155, 211, 1123
DpnI	GATC	4 cut(s)	136, 243, 637, 1236
DpnII	GATC	4 cut(s)	134, 241, 635, 1234
EaeI	YGGCCR	2 cut(s)	481, 1176
EagI	CGGCCG	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EciI	GGCGGA	1 cut(s)	569
EclXI	CGGCCG	1 cut(s)	481
Eco130I	CCWWGG	4 cut(s)	343, 520, 992, 1179
Eco31I	GGTCTC	1 cut(s)	1187
Eco47I	GGWCC	1 cut(s)	775
Eco52I	CGGCCG	1 cut(s)	481
Eco57I	CTGAAG	2 cut(s)	755, 914
Eco81I	CCTNAGG	1 cut(s)	1123
EcoO109I	RGGNCCY	2 cut(s)	775, 989
EcoRII	CCWGG	2 cut(s)	383, 426
EcoT14I	CCWWGG	4 cut(s)	343, 520, 992, 1179
EcoT22I	ATGCAT	1 cut(s)	766
ErhI	CCWWGG	4 cut(s)	343, 520, 992, 1179
Esp3I	CGTCTC	1 cut(s)	254
FaeI	CATG	6 cut(s)	53, 101, 165, 524, 768, 1242
FaqI	GGGAC	2 cut(s)	761, 1172
FatI	CATG	6 cut(s)	49, 97, 161, 520, 764, 1238
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	4 cut(s)	65, 178, 726, 846
FokI	GGATG	2 cut(s)	157, 542
Fsp4HI	GCNGC	4 cut(s)	65, 178, 726, 846
FspBI	CTAG	2 cut(s)	462, 1211
GluI	GCNGC	4 cut(s)	65, 178, 726, 846
GsuI	CTGGAG	2 cut(s)	406, 1135
HaeIII	GGCC	3 cut(s)	483, 990, 1178
HapII	CCGG	1 cut(s)	942
Hin1II	CATG	6 cut(s)	53, 101, 165, 524, 768, 1242
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	1045
HinfI	GANTC	2 cut(s)	455, 516
HpaII	CCGG	1 cut(s)	942
HphI	GGTGA	4 cut(s)	119, 450, 557, 1009
Hpy166II	GTNNAC	4 cut(s)	18, 357, 955, 1063
Hpy188I	TCNGA	3 cut(s)	594, 894, 1009
Hpy188III	TCNNGA	7 cut(s)	98, 235, 452, 563, 816, 1125, 1159
Hpy8I	GTNNAC	4 cut(s)	18, 357, 955, 1063
HpyAV	CCTTC	4 cut(s)	282, 813, 889, 1024
HpyCH4IV	ACGT	2 cut(s)	359, 957
HpyCH4V	TGCA	8 cut(s)	170, 407, 420, 506, 707, 764, 962, 1148
HpyF3I	CTNAG	3 cut(s)	155, 211, 1123
HpySE526I	ACGT	2 cut(s)	359, 957
Hsp92II	CATG	6 cut(s)	53, 101, 165, 524, 768, 1242
KpnI	GGTACC	1 cut(s)	926
Kzo9I	GATC	4 cut(s)	134, 241, 635, 1234
LguI	GCTCTTC	1 cut(s)	338
LmnI	GCTCC	5 cut(s)	61, 266, 347, 794, 983
Lsp1109I	GCAGC	3 cut(s)	76, 737, 857
LweI	GCATC	3 cut(s)	359, 520, 1235
MaeI	CTAG	2 cut(s)	462, 1211
MaeII	ACGT	2 cut(s)	359, 957
MaeIII	GTNAC	3 cut(s)	107, 456, 574
MalI	GATC	4 cut(s)	136, 243, 637, 1236
MboI	GATC	4 cut(s)	134, 241, 635, 1234
MboII	GAAGA	8 cut(s)	113, 236, 325, 503, 581, 636, 761, 1226
MfeI	CAATTG	2 cut(s)	6, 138
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	1178
MluNI	TGGCCA	1 cut(s)	1178
MlyI	GAGTC	2 cut(s)	464, 510
MmeI	TCCRAC	3 cut(s)	39, 634, 856
MnlI	CCTC	4 cut(s)	46, 256, 481, 1132
Mox20I	TGGCCA	1 cut(s)	1178
Mph1103I	ATGCAT	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	1218
MscI	TGGCCA	1 cut(s)	1178
MseI	TTAA	4 cut(s)	42, 659, 687, 1023
MslI	CAYNNNNRTG	2 cut(s)	102, 463
Msp20I	TGGCCA	1 cut(s)	1178
MspA1I	CMGCKG	2 cut(s)	728, 848
MspI	CCGG	1 cut(s)	942
MspR9I	CCNGG	2 cut(s)	385, 428
MunI	CAATTG	2 cut(s)	6, 138
MvaI	CCWGG	2 cut(s)	385, 428
NcoI	CCATGG	1 cut(s)	520
NdeII	GATC	4 cut(s)	134, 241, 635, 1234
NlaIII	CATG	6 cut(s)	53, 101, 165, 524, 768, 1242
NlaIV	GGNNCC	3 cut(s)	751, 777, 924
NmeAIII	GCCGAG	1 cut(s)	509
NmuCI	GTSAC	2 cut(s)	107, 456
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	165, 768
PagI	TCATGA	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	1218
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	66, 179, 727, 847
PleI	GAGTC	2 cut(s)	463, 510
PpsI	GAGTC	2 cut(s)	463, 510
PpuMI	RGGWCCY	1 cut(s)	775
PshBI	ATTAAT	4 cut(s)	42, 659, 687, 1023
Psp5II	RGGWCCY	1 cut(s)	775
Psp6I	CCWGG	2 cut(s)	383, 426
PspGI	CCWGG	2 cut(s)	383, 426
PspN4I	GGNNCC	3 cut(s)	751, 777, 924
PspPI	GGNCC	2 cut(s)	775, 989
PspPPI	RGGWCCY	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	848
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	2 cut(s)	728, 848
RsaI	GTAC	2 cut(s)	696, 924
RsaNI	GTAC	2 cut(s)	695, 923
RseI	CAYNNNNRTG	2 cut(s)	102, 463
SalI	GTCGAC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	42, 659, 687, 1023
SatI	GCNGC	4 cut(s)	65, 178, 726, 846
Sau3AI	GATC	4 cut(s)	134, 241, 635, 1234
Sau96I	GGNCC	2 cut(s)	775, 989
SchI	GAGTC	2 cut(s)	464, 510
ScrFI	CCNGG	2 cut(s)	385, 428
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	3 cut(s)	359, 520, 1235
SfcI	CTRYAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	775
SmiMI	CAYNNNNRTG	2 cut(s)	102, 463
SsiI	CCGC	2 cut(s)	177, 554
SspMI	CTAG	2 cut(s)	462, 1211
StyD4I	CCNGG	2 cut(s)	383, 426
StyI	CCWWGG	4 cut(s)	343, 520, 992, 1179
TaiI	ACGT	2 cut(s)	362, 960
TaqI	TCGA	4 cut(s)	17, 634, 971, 1233
TatI	WGTACW	1 cut(s)	694
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	4 cut(s)	42, 659, 687, 1023
Tru9I	TTAA	4 cut(s)	42, 659, 687, 1023
TseFI	GTSAC	2 cut(s)	107, 456
TseI	GCWGC	3 cut(s)	64, 725, 845
Tsp45I	GTSAC	2 cut(s)	107, 456
TspDTI	ATGAA	7 cut(s)	61, 114, 303, 325, 352, 847, 1124
VpaK11BI	GGWCC	1 cut(s)	775
VspI	ATTAAT	4 cut(s)	42, 659, 687, 1023
XapI	RAATTY	5 cut(s)	309, 494, 558, 879, 1218
XceI	RCATGY	2 cut(s)	165, 768
XmiI	GTMKAC	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	1218
XspI	CTAG	2 cut(s)	462, 1211
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.