Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Reverse (-)

6588771 .. 6591363

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTGAAGCCGTAGAGGTCATGTTCGGAAATGGGTTCCCGGAGATTCACAAAGCCACATCACCCACTCAAACCCTCCACTCTAACCAGCAAGACTGCCATTGGTATGAAGAAACCATCGATGATGATCTCAAGTGGTCTTTTGCCCTCAACAGTGTTCTCCATCAAGGAACTAGTGAGTACCAAGATATTGCTCTGTTGGACACCAAACGTTTTGGAAAGGTGCTTGTGATTGATGGGAAAATGCAAAGTGCTGAGAGAGATGAGTTTATCTACCATGAATGTTTGATCCATCCCGCTCTCCTTTTCCATCCCAACCCCAAGACTGTGTTTATAATGGGAGGAGGTGAAGGCTCTGCTGCAAGAGAAATACTAAAACACACGACGATCGAGAAAGTTGTTATGTGTGATATTGATCAGGAAGTTGTTGATTTTTGCAGAAGATTTCTGACCGTTAACAGCGATGCTTTCTGTAACAAAAAGCTTGAACTTGTGATCAAAGATGCAAAGGCTGAATTAGAGAAAAGGGAAGAGAAGTTTGATATCATAGTGGGAGATTTAGCTGATCCAGTGGAAGGTGGACCTTGTTATCAGCTCTACACCAAATCCTTCTACCAAAACATTCTCAAACCCAAGCTTAGCCCTAATGGCATTTTTGTCACCCAGGCTGGACCAGCAGGAATATTCACTCATAAGGAAGTCTTCACATCAATCTACAACACCATGAAGCAAGTCTTCAAGTACGTGAAGGCTTACACAGCACATGTGCCATCATTTGCGGACACATGGGGATGGGTGATGGCATCGGACCACGAGTTTGACGTTGAAGTTGATGAAATGGATCGAAGAATCGAAGAGAGAGTTAACGGAGAATTGATGTATCTAAACGCTCCTTCTTTCGTCTCTGCTGCTACTCTCAACAAAACCATCTCTCTCGCGCTAGAGAAGGAGACTGAAGTTTATAGTGAAGAGAATGCGAGATTCATTCATGGTCATGGTGTGGCGTACCGGCATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

339

Amino Acids

38.55

Weight (kDa)

5.2

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	28 - 79	1.9e-14	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	82 - 264	9e-47	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	1 cut(s)	938
AciI	CCGC	2 cut(s)	297, 779
AclI	AACGTT	1 cut(s)	211
AclWI	GGATC	3 cut(s)	283, 560, 849
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	3 cut(s)	182, 743, 1007
AfiI	CCNNNNNNNGG	1 cut(s)	575
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	3 cut(s)	488, 739, 827
AhlI	ACTAGT	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	663
AluBI	AGCT	4 cut(s)	484, 563, 595, 637
AluI	AGCT	4 cut(s)	484, 563, 595, 637
Alw26I	GTCTC	2 cut(s)	907, 944
AlwI	GGATC	3 cut(s)	283, 560, 849
ApeKI	GCWGC	2 cut(s)	359, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AspLEI	GCGC	1 cut(s)	940
AspS9I	GGNCC	3 cut(s)	581, 671, 808
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	5 cut(s)	17, 54, 359, 652, 808
AvaII	GGWCC	3 cut(s)	581, 671, 808
BauI	CACGAG	1 cut(s)	812
BbsI	GAAGAC	2 cut(s)	694, 727
BbvI	GCAGC	2 cut(s)	346, 895
BccI	CCATC	9 cut(s)	125, 171, 230, 300, 318, 778, 786, 793, 935
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	2 cut(s)	415, 495
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	2 cut(s)	907, 944
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	2 cut(s)	174, 941
BglI	GCCNNNNNGGC	1 cut(s)	648
BisI	GCNGC	2 cut(s)	360, 909
BlpI	GCTNAGC	1 cut(s)	638
BlsI	GCNGC	2 cut(s)	361, 910
Bme1390I	CCNGG	2 cut(s)	41, 665
Bme18I	GGWCC	3 cut(s)	581, 671, 808
BmgT120I	GGNCC	3 cut(s)	581, 671, 808
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	41, 665
BmsI	GCATC	3 cut(s)	454, 493, 812
BpiI	GAAGAC	2 cut(s)	694, 727
Bpu1102I	GCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	745
BsaBI	GATNNNNATC	2 cut(s)	126, 414
BsaJI	CCNNGG	1 cut(s)	663
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse118I	RCCGGY	1 cut(s)	1008
Bse1I	ACTGG	1 cut(s)	569
Bse8I	GATNNNNATC	2 cut(s)	126, 414
BseBI	CCWGG	1 cut(s)	665
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	3 cut(s)	292, 310, 797
BseJI	GATNNNNATC	2 cut(s)	126, 414
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	346, 895
Bsh1236I	CGCG	1 cut(s)	938
Bsh1285I	CGRYCG	1 cut(s)	390
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	41, 1009
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	907, 944
BsmBI	CGTCTC	1 cut(s)	907
BsmI	GAATGC	1 cut(s)	979
Bsp143I	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
Bsp1720I	GCTNAGC	1 cut(s)	638
BspACI	CCGC	2 cut(s)	297, 779
BspCNI	CTCAG	1 cut(s)	247
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	938
BspLI	GGNNCC	1 cut(s)	38
BspPI	GGATC	3 cut(s)	283, 560, 849
BsrBI	CCGCTC	1 cut(s)	299
BsrFI	RCCGGY	1 cut(s)	1008
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	1008
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
BssSI	CACGAG	1 cut(s)	812
Bst2BI	CACGAG	1 cut(s)	812
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	3 cut(s)	155, 328, 454
Bst6I	CTCTTC	3 cut(s)	525, 849, 963
BstBAI	YACGTR	1 cut(s)	745
BstDEI	CTNAG	2 cut(s)	255, 638
BstF5I	GGATG	3 cut(s)	292, 310, 797
BstFNI	CGCG	1 cut(s)	938
BstHHI	GCGC	1 cut(s)	940
BstKTI	GATC	7 cut(s)	130, 291, 390, 418, 498, 568, 844
BstMAI	GTCTC	2 cut(s)	907, 944
BstMBI	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	3 cut(s)	648, 674, 758
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	767
BstSCI	CCNGG	2 cut(s)	39, 663
BstUI	CGCG	1 cut(s)	938
BstV1I	GCAGC	2 cut(s)	346, 895
BstV2I	GAAGAC	2 cut(s)	694, 727
Bsu15I	ATCGAT	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	477
BtsCI	GGATG	3 cut(s)	292, 310, 797
BtsIMutI	CAGTG	2 cut(s)	160, 576
CfoI	GCGC	1 cut(s)	940
Cfr10I	RCCGGY	1 cut(s)	1008
Cfr13I	GGNCC	3 cut(s)	581, 671, 808
ClaI	ATCGAT	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	181, 742, 1006
CviAII	CATG	7 cut(s)	22, 278, 724, 764, 786, 989, 995
CviQI	GTAC	3 cut(s)	181, 742, 1006
DdeI	CTNAG	2 cut(s)	255, 638
DpnI	GATC	7 cut(s)	129, 290, 389, 417, 497, 567, 843
DpnII	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
Eam1104I	CTCTTC	3 cut(s)	525, 849, 963
EarI	CTCTTC	3 cut(s)	525, 849, 963
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	3 cut(s)	581, 671, 808
Eco57I	CTGAAG	1 cut(s)	975
EcoRII	CCWGG	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	907
FaeI	CATG	7 cut(s)	25, 281, 727, 767, 789, 992, 998
FalI	AAGNNNNNCTT	4 cut(s)	686, 718, 719, 751
FatI	CATG	7 cut(s)	21, 277, 723, 763, 785, 988, 994
FauI	CCCGC	1 cut(s)	304
FbaI	TGATCA	2 cut(s)	415, 495
Fnu4HI	GCNGC	2 cut(s)	360, 909
FokI	GGATG	3 cut(s)	279, 297, 804
Fsp4HI	GCNGC	2 cut(s)	360, 909
FspBI	CTAG	2 cut(s)	174, 941
GlaI	GCGC	1 cut(s)	939
GluI	GCNGC	2 cut(s)	360, 909
HapII	CCGG	2 cut(s)	41, 1009
HhaI	GCGC	1 cut(s)	940
Hin1II	CATG	7 cut(s)	25, 281, 727, 767, 789, 992, 998
Hin6I	GCGC	1 cut(s)	938
HinP1I	GCGC	1 cut(s)	938
HincII	GTYRAC	2 cut(s)	457, 865
HindII	GTYRAC	2 cut(s)	457, 865
HindIII	AAGCTT	2 cut(s)	482, 635
HinfI	GANTC	3 cut(s)	46, 849, 981
HpaI	GTTAAC	2 cut(s)	457, 865
HpaII	CCGG	2 cut(s)	41, 1009
HphI	GGTGA	5 cut(s)	17, 54, 359, 652, 808
Hpy166II	GTNNAC	3 cut(s)	457, 581, 865
Hpy188I	TCNGA	3 cut(s)	29, 450, 808
Hpy188III	TCNNGA	2 cut(s)	391, 419
Hpy8I	GTNNAC	3 cut(s)	457, 581, 865
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	6 cut(s)	344, 569, 619, 742, 903, 940
HpyCH4III	ACNGT	3 cut(s)	155, 328, 454
HpyCH4IV	ACGT	3 cut(s)	211, 744, 822
HpyCH4V	TGCA	4 cut(s)	247, 362, 438, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	648, 674, 758
HpyF3I	CTNAG	2 cut(s)	255, 638
HpySE526I	ACGT	3 cut(s)	211, 744, 822
Hsp92II	CATG	7 cut(s)	25, 281, 727, 767, 789, 992, 998
HspAI	GCGC	1 cut(s)	938
Ksp22I	TGATCA	2 cut(s)	415, 495
KspAI	GTTAAC	2 cut(s)	457, 865
Kzo9I	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
LmnI	GCTCC	1 cut(s)	895
LpnPI	CCDG	9 cut(s)	54, 101, 404, 582, 650, 654, 663, 677, 687
Lsp1109I	GCAGC	2 cut(s)	346, 895
LweI	GCATC	3 cut(s)	454, 493, 812
MaeI	CTAG	2 cut(s)	174, 941
MaeII	ACGT	3 cut(s)	211, 744, 822
MaeIII	GTNAC	2 cut(s)	473, 658
MalI	GATC	7 cut(s)	129, 290, 389, 417, 497, 567, 843
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
MboII	GAAGA	8 cut(s)	122, 453, 542, 694, 727, 858, 866, 980
MluCI	AATT	2 cut(s)	515, 872
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	5 cut(s)	10, 86, 158, 335, 338
MseI	TTAA	3 cut(s)	456, 864, 1018
MslI	CAYNNNNRTG	3 cut(s)	105, 790, 993
MspI	CCGG	2 cut(s)	41, 1009
MspR9I	CCNGG	2 cut(s)	41, 665
Mva1269I	GAATGC	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	1 cut(s)	938
MwoI	GCNNNNNNNGC	3 cut(s)	648, 674, 758
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
NlaIII	CATG	7 cut(s)	25, 281, 727, 767, 789, 992, 998
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	658
NspI	RCATGY	1 cut(s)	767
PciI	ACATGT	1 cut(s)	763
PcsI	WCGNNNNNNNCGW	1 cut(s)	819
PctI	GAATGC	1 cut(s)	979
PfeI	GAWTC	3 cut(s)	46, 849, 981
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	2 cut(s)	361, 910
Ple19I	CGATCG	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	745
PscI	ACATGT	1 cut(s)	763
PsiI	TTATAA	1 cut(s)	335
Psp1406I	AACGTT	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	3 cut(s)	581, 671, 808
PvuI	CGATCG	1 cut(s)	390
RsaI	GTAC	3 cut(s)	182, 743, 1007
RsaNI	GTAC	3 cut(s)	181, 742, 1006
RseI	CAYNNNNRTG	3 cut(s)	105, 790, 993
SaqAI	TTAA	3 cut(s)	456, 864, 1018
SatI	GCNGC	2 cut(s)	360, 909
Sau3AI	GATC	7 cut(s)	127, 288, 387, 415, 495, 565, 841
Sau96I	GGNCC	3 cut(s)	581, 671, 808
ScrFI	CCNGG	2 cut(s)	41, 665
SfaNI	GCATC	3 cut(s)	454, 493, 812
SinI	GGWCC	3 cut(s)	581, 671, 808
SmiMI	CAYNNNNRTG	3 cut(s)	105, 790, 993
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	2 cut(s)	515, 872
SsiI	CCGC	2 cut(s)	297, 779
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	2 cut(s)	174, 941
StyD4I	CCNGG	2 cut(s)	39, 663
TaaI	ACNGT	3 cut(s)	155, 328, 454
TaiI	ACGT	3 cut(s)	214, 747, 825
TaqI	TCGA	4 cut(s)	120, 390, 844, 852
TasI	AATT	2 cut(s)	515, 872
TfiI	GAWTC	3 cut(s)	46, 849, 981
Tru1I	TTAA	3 cut(s)	456, 864, 1018
Tru9I	TTAA	3 cut(s)	456, 864, 1018
TscAI	CASTG	2 cut(s)	160, 576
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	359, 908
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	6 cut(s)	123, 294, 740, 849, 973, 977
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	2 cut(s)	160, 576
VpaK11BI	GGWCC	3 cut(s)	581, 671, 808
XceI	RCATGY	1 cut(s)	767
XspI	CTAG	2 cut(s)	174, 941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.