Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Forward (+)

35672739 .. 35675685

Gene Structure 2947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G405900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTGAAGCCGTCGAGTTTTTCCATGCAAATGGTTTCTCTAACTTGACCCAAAAATTTGATCCTAAACTTGTACTTAATGTTAATGGTAACAGCCACTTAGACAGAGATGGTTCCTGGTACGAAGAAACCATTGACGATGATCTCAAATGGTCGTTTGCTCTCAATGTCAATGGAGTGCTGCATAAAGGGACGAGTGAGTTTCAGGAGATAGCCTTGTTGGATACAAAGCGTTTTGGGAAGGTTTTGGTGATTGATGGAAAGATGCAGAGTGCAGAAGTGGACGAATTTATTTACCATGAATGCTTGATACATCCTGCTCTCTTATGTCATCCCAAGCCAAAAACTGTATTTATAATGGGAGGTGGAGAAGGGTCAGCCGCAAGAGAAGCTCTCAAGCACAAATTACTGGACAAAGTGGTAATGTGTGACATCGATCAGGAGGTGGTTGATTTCTGCCGCAGACATTTGACAGTGAATCAGGAGGCATTTTCTCACAAGAAGCTTAATCTTGTTATAAATGATGCCAAGGCTGAACTGGAGAAGAGTTGCGAAAAATTCGATATCATAGTAGGAGACTTAGCAGACCCAGTTGAAGGAGGGCCTTGCTATCAACTCTACACAAAATCTTTCTATGAGCAAATTCTCAAACCTAAGCTTAATCACGGTGGCATTTTTGTCACTCAGGCTGGACCAGCAGGCATTTTCACCCACAAAGAGGTCTTCACCTCTATTTTCAACACAATCAAACAGGTCTTCAAGTATGTGGTGGCATATGCAGCTCACATACCATCTTTTGCAGATACATGGGGATGGGTTATGGCCTCGGATGAACCGTTCTCTATCAATGCTGAGAAAATGGACAGAAGGATAGAGGAAAGAATTGATGGGGAACTGAACTATTTGAATGGTGCTTTGTTCATCTCCTCTGCAACCATGAACAAAACTGTTTCTTTATCGCTGTTGAACGAAACTCATGTCTACACTGAGGAAGATGCAAGATTTATTCATGGACATGGGGTGGCTTACCGCATCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

347

Amino Acids

38.98

Weight (kDa)

5.52

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	356, 518
AccI	GTMKAC	1 cut(s)	981
AciI	CCGC	3 cut(s)	381, 460, 1030
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	4 cut(s)	56, 287, 557, 642
AfaI	GTAC	2 cut(s)	75, 122
AfiI	CCNNNNNNNGG	2 cut(s)	596, 718
AgsI	TTSAA	5 cut(s)	596, 739, 760, 907, 967
AjnI	CCWGG	1 cut(s)	116
AloI	GAACNNNNNNTCC	2 cut(s)	821, 853
AluBI	AGCT	4 cut(s)	392, 505, 658, 782
AluI	AGCT	4 cut(s)	392, 505, 658, 782
Alw26I	GTCTC	1 cut(s)	570
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	602, 822
ApeKI	GCWGC	2 cut(s)	181, 779
ApoI	RAATTY	4 cut(s)	56, 287, 557, 642
ArsI	GACNNNNNNTTYG	2 cut(s)	963, 995
AspS9I	GGNCC	2 cut(s)	602, 692
AsuHPI	GGTGA	4 cut(s)	17, 262, 700, 718
AvaII	GGWCC	1 cut(s)	692
BbsI	GAAGAC	2 cut(s)	715, 748
BbvI	GCAGC	2 cut(s)	168, 791
BccI	CCATC	5 cut(s)	104, 251, 799, 807, 881
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	182, 381, 460, 780
BlsI	GCNGC	4 cut(s)	183, 382, 461, 781
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	602, 692
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	3 cut(s)	255, 514, 985
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	2 cut(s)	715, 748
BplI	GAGNNNNNCTC	2 cut(s)	378, 410
BpmI	CTGGAG	1 cut(s)	560
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	528, 825
Bsc4I	CCNNNNNNNGG	2 cut(s)	596, 718
Bse1I	ACTGG	3 cut(s)	414, 543, 590
BseBI	CCWGG	1 cut(s)	118
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	528, 825
BseGI	GGATG	4 cut(s)	313, 331, 818, 835
BseLI	CCNNNNNNNGG	2 cut(s)	596, 718
BseMII	CTCAG	3 cut(s)	698, 843, 978
BseNI	ACTGG	3 cut(s)	414, 543, 590
BseRI	GAGGAG	1 cut(s)	916
BseXI	GCAGC	2 cut(s)	168, 791
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	604, 824
BshVI	ATCGAT	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	2 cut(s)	596, 718
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	604, 824
Bsp143I	GATC	3 cut(s)	61, 142, 436
BspACI	CCGC	3 cut(s)	381, 460, 1030
BspANI	GGCC	2 cut(s)	604, 824
BspCNI	CTCAG	3 cut(s)	697, 844, 979
BspDI	ATCGAT	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	414, 543, 590
BssECI	CCNNGG	2 cut(s)	528, 825
BssMI	GATC	3 cut(s)	61, 142, 436
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	5 cut(s)	349, 475, 668, 837, 949
Bst6I	CTCTTC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	700
BstDEI	CTNAG	6 cut(s)	100, 580, 654, 684, 852, 987
BstF5I	GGATG	4 cut(s)	313, 331, 818, 835
BstKTI	GATC	3 cut(s)	64, 145, 439
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	3 cut(s)	61, 142, 436
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 695, 779
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	168, 791
BstV2I	GAAGAC	2 cut(s)	715, 748
BstXI	CCANNNNNNTGG	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	435
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	604, 824
BsuTUI	ATCGAT	1 cut(s)	435
BtsCI	GGATG	4 cut(s)	313, 331, 818, 835
BtsIMutI	CAGTG	2 cut(s)	480, 984
Cac8I	GCNNGC	1 cut(s)	700
Cfr13I	GGNCC	2 cut(s)	602, 692
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	2 cut(s)	74, 121
CviAII	CATG	7 cut(s)	26, 299, 807, 937, 977, 1010, 1016
CviQI	GTAC	2 cut(s)	74, 121
DdeI	CTNAG	6 cut(s)	100, 580, 654, 684, 852, 987
DpnI	GATC	3 cut(s)	63, 144, 438
DpnII	GATC	3 cut(s)	61, 142, 436
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	1 cut(s)	692
EcoO109I	RGGNCCY	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	528
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	7 cut(s)	29, 302, 810, 940, 980, 1013, 1019
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	7 cut(s)	25, 298, 806, 936, 976, 1009, 1015
FauNDI	CATATG	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	981
Fnu4HI	GCNGC	4 cut(s)	182, 381, 460, 780
FokI	GGATG	4 cut(s)	300, 318, 825, 842
Fsp4HI	GCNGC	4 cut(s)	182, 381, 460, 780
GluI	GCNGC	4 cut(s)	182, 381, 460, 780
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	604, 824
Hin1II	CATG	7 cut(s)	29, 302, 810, 940, 980, 1013, 1019
HindIII	AAGCTT	2 cut(s)	503, 656
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	4 cut(s)	17, 262, 700, 718
Hpy166II	GTNNAC	2 cut(s)	283, 982
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	3 cut(s)	206, 440, 482
Hpy8I	GTNNAC	2 cut(s)	283, 982
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	4 cut(s)	235, 365, 590, 861
HpyCH4III	ACNGT	5 cut(s)	349, 475, 668, 837, 949
HpyCH4V	TGCA	8 cut(s)	29, 184, 268, 275, 779, 800, 932, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 695, 779
HpyF3I	CTNAG	6 cut(s)	100, 580, 654, 684, 852, 987
Hsp92II	CATG	7 cut(s)	29, 302, 810, 940, 980, 1013, 1019
Kzo9I	GATC	3 cut(s)	61, 142, 436
Lsp1109I	GCAGC	2 cut(s)	168, 791
LweI	GCATC	3 cut(s)	255, 514, 985
MaeIII	GTNAC	3 cut(s)	89, 428, 679
MalI	GATC	3 cut(s)	63, 144, 438
MboI	GATC	3 cut(s)	61, 142, 436
MboII	GAAGA	5 cut(s)	137, 556, 715, 748, 1004
MluCI	AATT	6 cut(s)	56, 287, 404, 557, 642, 882
MmeI	TCCRAC	1 cut(s)	201
MseI	TTAA	4 cut(s)	78, 84, 507, 660
MslI	CAYNNNNRTG	3 cut(s)	30, 811, 1014
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	3 cut(s)	389, 695, 779
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	3 cut(s)	61, 142, 436
NlaIII	CATG	7 cut(s)	29, 302, 810, 940, 980, 1013, 1019
NlaIV	GGNNCC	1 cut(s)	115
NmuCI	GTSAC	2 cut(s)	428, 679
PcsI	WCGNNNNNNNCGW	1 cut(s)	833
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	4 cut(s)	183, 382, 461, 781
PsiI	TTATAA	2 cut(s)	356, 518
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	602, 692
RsaI	GTAC	2 cut(s)	75, 122
RsaNI	GTAC	2 cut(s)	74, 121
RseI	CAYNNNNRTG	3 cut(s)	30, 811, 1014
SaqAI	TTAA	4 cut(s)	78, 84, 507, 660
SatI	GCNGC	4 cut(s)	182, 381, 460, 780
Sau3AI	GATC	3 cut(s)	61, 142, 436
Sau96I	GGNCC	2 cut(s)	602, 692
ScrFI	CCNGG	1 cut(s)	118
SfaNI	GCATC	3 cut(s)	255, 514, 985
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	3 cut(s)	30, 811, 1014
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	6 cut(s)	56, 287, 404, 557, 642, 882
SsiI	CCGC	3 cut(s)	381, 460, 1030
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	5 cut(s)	349, 475, 668, 837, 949
TaqI	TCGA	3 cut(s)	15, 435, 561
TasI	AATT	6 cut(s)	56, 287, 404, 557, 642, 882
TatI	WGTACW	1 cut(s)	73
TauI	GCSGC	2 cut(s)	383, 462
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	4 cut(s)	78, 84, 507, 660
Tru9I	TTAA	4 cut(s)	78, 84, 507, 660
TscAI	CASTG	2 cut(s)	480, 991
TseFI	GTSAC	2 cut(s)	428, 679
TseI	GCWGC	2 cut(s)	181, 779
Tsp45I	GTSAC	2 cut(s)	428, 679
TspDTI	ATGAA	5 cut(s)	315, 846, 910, 953, 998
TspRI	CASTG	2 cut(s)	480, 991
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	4 cut(s)	56, 287, 557, 642
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.