Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Reverse (-)

4377077 .. 4379469

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTGAGGCTGTTGAGTTTTACCATGCAAACGGAAATGGGTTCTCAAAATTCAGTGAGAAGTTTGATCCTAAAGCAGTGTTACTACTAAACGGTAGCAACCACATAGAGAGAGATACAGATAGTTCCTGGTATGAAGAAACCATTGATGACGATCTCAAATGGTCATTTGCTCTCAATGTCAACGGTGTGCTGCATAAAGGAACTAGCGAGTACCAGGAGATAGCTTTATTGGACACAAAGCGTTTCGGGAAGGTACTGATGATTGATGGGAAGATGCAAAGTGCAGAAGTGGATGAATTTATATATCATGAATGCTTGATACATCCTGCACTCTTATGTCACCCAAAGCCTGAACGTGTATTCATAATGGGAGGTGGGGAAGGGTCAGCTGCAAGGGAAGCACTCAAGCACAAATTACTGGACAAAGTTACCATGTGTGACATCGATCAGGAGGTGGTTGATTTCTGCCGCAGGCATTTGACAGTGAATCAGGAGGCATTTTCTCATCATAAGCTTAACCTTATTATAAATGATGCCAAGGCGGAATTGGAGAAGAGTTGCGAAAAATTTGATATCATAGTCGGAGATTTAGCAGACCCGGTTGAAGGAGGACCTTGCTATCAACTCTACACAAAATCCTTCTATGACAAAATTCTTAAACCTAAGCTTAATCATGGTGGCATTTTTGTGACCCAGGCTGGTCCAGCAGGCATTTTCACCCACAAAGAGGTCTTCACCTCTATATACAACACAATTAAACAGGTCTTCAAGTGTAAGTCTCCCACATGTGTATATGTAGGGTTGTTCTCTGGTGCAGTTAACTGCACTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

279

Amino Acids

31.19

Weight (kDa)

5.73

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	530, 835
AciI	CCGC	2 cut(s)	472, 545
AclWI	GGATC	1 cut(s)	62
AcsI	RAATTY	4 cut(s)	50, 299, 569, 654
AfaI	GTAC	2 cut(s)	215, 258
AfiI	CCNNNNNNNGG	2 cut(s)	608, 730
AflIII	ACRYGT	2 cut(s)	358, 788
AgsI	TTSAA	2 cut(s)	608, 772
AjnI	CCWGG	3 cut(s)	128, 216, 696
AluBI	AGCT	4 cut(s)	227, 392, 517, 670
AluI	AGCT	4 cut(s)	227, 392, 517, 670
Alw26I	GTCTC	1 cut(s)	786
AlwI	GGATC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	193, 392
ApoI	RAATTY	4 cut(s)	50, 299, 569, 654
AspS9I	GGNCC	2 cut(s)	614, 704
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	4 cut(s)	17, 335, 712, 730
AvaII	GGWCC	2 cut(s)	614, 704
BbsI	GAAGAC	2 cut(s)	727, 760
BbvI	GCAGC	2 cut(s)	180, 379
BccI	CCATC	1 cut(s)	263
BciT130I	CCWGG	3 cut(s)	130, 218, 698
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	1 cut(s)	786
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	3 cut(s)	194, 393, 472
BlsI	GCNGC	3 cut(s)	195, 394, 473
Bme1390I	CCNGG	4 cut(s)	130, 218, 602, 698
Bme18I	GGWCC	2 cut(s)	614, 704
BmgT120I	GGNCC	2 cut(s)	614, 704
BmrFI	CCNGG	4 cut(s)	130, 218, 602, 698
BmsI	GCATC	2 cut(s)	267, 526
BpiI	GAAGAC	2 cut(s)	727, 760
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	1 cut(s)	602
Bsa29I	ATCGAT	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	540, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 730
Bse1I	ACTGG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	3 cut(s)	130, 218, 698
BseCI	ATCGAT	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	540, 696
BseGI	GGATG	2 cut(s)	301, 325
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	2 cut(s)	608, 730
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	180, 379
BsgI	GTGCAG	4 cut(s)	306, 315, 811, 837
BshVI	ATCGAT	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	608, 730
BsmAI	GTCTC	1 cut(s)	786
BsmI	GAATGC	1 cut(s)	320
Bsp143I	GATC	3 cut(s)	67, 154, 448
BspACI	CCGC	2 cut(s)	472, 545
BspDI	ATCGAT	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	310
BspPI	GGATC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	540, 696
BssMI	GATC	3 cut(s)	67, 154, 448
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	3 cut(s)	130, 218, 698
Bst4CI	ACNGT	3 cut(s)	95, 188, 487
Bst6I	CTCTTC	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	476, 712
BstDEI	CTNAG	1 cut(s)	666
BstF5I	GGATG	2 cut(s)	301, 325
BstKTI	GATC	3 cut(s)	70, 157, 451
BstMAI	GTCTC	1 cut(s)	786
BstMBI	GATC	3 cut(s)	67, 154, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 707
BstNI	CCWGG	3 cut(s)	130, 218, 698
BstNSI	RCATGY	1 cut(s)	792
BstSCI	CCNGG	4 cut(s)	128, 216, 600, 696
BstV1I	GCAGC	2 cut(s)	180, 379
BstV2I	GAAGAC	2 cut(s)	727, 760
Bsu15I	ATCGAT	1 cut(s)	447
BsuTUI	ATCGAT	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	301, 325
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	3 cut(s)	61, 84, 492
Cac8I	GCNNGC	2 cut(s)	476, 712
CciI	TCATGA	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	614, 704
ClaI	ATCGAT	1 cut(s)	447
Csp6I	GTAC	2 cut(s)	214, 257
CviAII	CATG	5 cut(s)	26, 311, 436, 677, 789
CviJI	RGCY	7 cut(s)	11, 227, 352, 392, 517, 670, 701
CviKI_1	RGCY	7 cut(s)	11, 227, 352, 392, 517, 670, 701
CviQI	GTAC	2 cut(s)	214, 257
DdeI	CTNAG	1 cut(s)	666
DpnI	GATC	3 cut(s)	69, 156, 450
DpnII	GATC	3 cut(s)	67, 154, 448
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	540
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	614, 704
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRII	CCWGG	3 cut(s)	128, 216, 696
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	5 cut(s)	29, 314, 439, 680, 792
FatI	CATG	5 cut(s)	25, 310, 435, 676, 788
Fnu4HI	GCNGC	3 cut(s)	194, 393, 472
FokI	GGATG	2 cut(s)	308, 312
Fsp4HI	GCNGC	3 cut(s)	194, 393, 472
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	3 cut(s)	194, 393, 472
HapII	CCGG	1 cut(s)	602
Hin1II	CATG	5 cut(s)	29, 314, 439, 680, 792
HincII	GTYRAC	2 cut(s)	184, 823
HindII	GTYRAC	2 cut(s)	184, 823
HindIII	AAGCTT	2 cut(s)	515, 668
HinfI	GANTC	1 cut(s)	490
HpaI	GTTAAC	1 cut(s)	823
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	4 cut(s)	17, 335, 712, 730
Hpy166II	GTNNAC	2 cut(s)	184, 823
Hpy188I	TCNGA	1 cut(s)	587
Hpy188III	TCNNGA	4 cut(s)	250, 311, 452, 494
Hpy8I	GTNNAC	2 cut(s)	184, 823
HpyAV	CCTTC	4 cut(s)	247, 377, 602, 652
HpyCH4III	ACNGT	3 cut(s)	95, 188, 487
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	8 cut(s)	29, 196, 280, 287, 332, 395, 818, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 707
HpyF3I	CTNAG	1 cut(s)	666
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	5 cut(s)	29, 314, 439, 680, 792
KspAI	GTTAAC	1 cut(s)	823
Kzo9I	GATC	3 cut(s)	67, 154, 448
Lsp1109I	GCAGC	2 cut(s)	180, 379
LweI	GCATC	2 cut(s)	267, 526
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	5 cut(s)	81, 341, 430, 440, 691
MalI	GATC	3 cut(s)	69, 156, 450
MboI	GATC	3 cut(s)	67, 154, 448
MboII	GAAGA	5 cut(s)	149, 286, 568, 727, 760
MluCI	AATT	7 cut(s)	50, 299, 416, 548, 569, 654, 756
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	368, 448, 490, 605, 724, 751
MseI	TTAA	5 cut(s)	519, 660, 672, 759, 822
MslI	CAYNNNNRTG	2 cut(s)	337, 689
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	4 cut(s)	130, 218, 602, 698
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	3 cut(s)	130, 218, 698
MwoI	GCNNNNNNNGC	2 cut(s)	401, 707
NciI	CCSGG	1 cut(s)	602
NdeII	GATC	3 cut(s)	67, 154, 448
NlaIII	CATG	5 cut(s)	29, 314, 439, 680, 792
NmuCI	GTSAC	3 cut(s)	341, 440, 691
NspI	RCATGY	1 cut(s)	792
PagI	TCATGA	1 cut(s)	310
PciI	ACATGT	1 cut(s)	788
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	490
PkrI	GCNGC	3 cut(s)	195, 394, 473
PpuMI	RGGWCCY	1 cut(s)	614
PscI	ACATGT	1 cut(s)	788
PsiI	TTATAA	2 cut(s)	530, 835
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	3 cut(s)	128, 216, 696
PspGI	CCWGG	3 cut(s)	128, 216, 696
PspPI	GGNCC	2 cut(s)	614, 704
PspPPI	RGGWCCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	2 cut(s)	215, 258
RsaNI	GTAC	2 cut(s)	214, 257
RseI	CAYNNNNRTG	2 cut(s)	337, 689
SaqAI	TTAA	5 cut(s)	519, 660, 672, 759, 822
SatI	GCNGC	3 cut(s)	194, 393, 472
Sau3AI	GATC	3 cut(s)	67, 154, 448
Sau96I	GGNCC	2 cut(s)	614, 704
ScrFI	CCNGG	4 cut(s)	130, 218, 602, 698
SfaNI	GCATC	2 cut(s)	267, 526
SinI	GGWCC	2 cut(s)	614, 704
SmiMI	CAYNNNNRTG	2 cut(s)	337, 689
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	7 cut(s)	50, 299, 416, 548, 569, 654, 756
SsiI	CCGC	2 cut(s)	472, 545
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	4 cut(s)	128, 216, 600, 696
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	95, 188, 487
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	1 cut(s)	447
TasI	AATT	7 cut(s)	50, 299, 416, 548, 569, 654, 756
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	5 cut(s)	519, 660, 672, 759, 822
Tru9I	TTAA	5 cut(s)	519, 660, 672, 759, 822
TscAI	CASTG	3 cut(s)	61, 84, 492
TseFI	GTSAC	3 cut(s)	341, 440, 691
TseI	GCWGC	2 cut(s)	193, 392
Tsp45I	GTSAC	3 cut(s)	341, 440, 691
TspDTI	ATGAA	4 cut(s)	150, 312, 327, 355
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	3 cut(s)	61, 84, 492
VpaK11BI	GGWCC	2 cut(s)	614, 704
XapI	RAATTY	4 cut(s)	50, 299, 569, 654
XceI	RCATGY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	547
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.