Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Reverse (-)

4390409 .. 4392958

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g08290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCCTTCTATTCTCCTCCGCCTCAGGTTCCGCTTGAGGATGACCAGCCTCCCCTGAACGTTGATGAGCATATCTACTTCTCCGAGAGTGATCATGATCAGGATGATGATATTCCCCAAGATGATGAGAATGGTGACCAGCAGGACCAAAACGGTGAAGAATGGTTTGAAGAGCAGCTCGAAGCTGATCTCAAATGGTCTTTTGCCTTGAATAGGGTGTTGCACAAAGGAACAAGCCAGTTTCAAGATGCTGCTCTTCTAGACTCGAAACGCTTTGGCAAGGTTCTGGTGATTGATGGAAGGCTGCAGAGTGCTGAAAAAGATGAATTTATATACCATGAGTCCTTGGTTCATCCTGCTCTTTTGCTACATGAAAACCCCAAAACCATATTCATAATGGGAGGTGGTGAAGGGTCTACAGCCAGGGAGGCACTGAAGCACAAAGGTGTGGAGAAAGTTATCATGTGTGATATAGATGAGGTGGTTGTCAATTTTTGCCGCGTACATTTAGAAGCAAATCACGAGGCGTTTTCTGATAATAGGCTTCAACTTGTTTTCAATGATGCTAAGGCTGAGTTGGAGAAAACTGAAGAGAGGTTTGATGTGATTGTGGGGGACGTAACAGACCCAATTGAGGGAGGCCCATGCAATGATCTTTACACCAAACGATTCTATGAGCAAGTCATAAAACCTCACCTCAAAGACAATGGCATCTTTGTCACTCAAGCTGGTCCAGCGGGAATGCTTTCTCACAAGGATATCTTCACCTCAATATACAACACTGTAAAACATGTGTTCAAATATGTGTTTGCGTACACAGCTCATGTGCCATCTTATGCGGATTCATGTGGATGGGTTGTGGCTTCAAATCAGCCACTCAAACTGGATGCTGCACAACTAGATAGCAGGATTCAGGAACGAATCCAAGGCGAGCTGCTGTATTTAGATGGTGCATTCATTGTCTCATCGACTGTGGTTAACAAGACGATCTTCGCATCACTTATGGAGGAAACTAATGTCTTCACTGAAGAAACTACAAAGTTCTGCTATGGACATGGGCTCACTGATGATGCACAACTGCACAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

364

Amino Acids

41.02

Weight (kDa)

4.65

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	55 - 106	8.8e-11	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	109 - 283	1.2e-44	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	416
AccII	CGCG	1 cut(s)	501
AciI	CCGC	5 cut(s)	20, 32, 499, 737, 839
AclI	AACGTT	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	3 cut(s)	455, 609, 1047
AfaI	GTAC	2 cut(s)	504, 815
AfiI	CCNNNNNNNGG	3 cut(s)	213, 634, 635
AflIII	ACRYGT	1 cut(s)	790
AgsI	TTSAA	7 cut(s)	170, 211, 245, 548, 559, 799, 867
AjnI	CCWGG	1 cut(s)	422
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AleI	CACNNNNGTG	1 cut(s)	444
AluBI	AGCT	5 cut(s)	178, 185, 728, 821, 934
AluI	AGCT	5 cut(s)	178, 185, 728, 821, 934
Alw26I	GTCTC	1 cut(s)	967
AoxI	GGCC	2 cut(s)	3, 640
ApeKI	GCWGC	5 cut(s)	175, 251, 304, 890, 934
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	745
AspS9I	GGNCC	3 cut(s)	145, 641, 731
AsuHPI	GGTGA	6 cut(s)	146, 167, 301, 419, 686, 757
AvaII	GGWCC	2 cut(s)	145, 731
AxyI	CCTNAGG	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	1062
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	1012
BbvI	GCAGC	5 cut(s)	187, 238, 291, 877, 921
BccI	CCATC	4 cut(s)	290, 838, 846, 941
BciT130I	CCWGG	1 cut(s)	424
BclI	TGATCA	2 cut(s)	91, 97
BcoDI	GTCTC	1 cut(s)	967
BfaI	CTAG	2 cut(s)	260, 899
BfmI	CTRYAG	2 cut(s)	305, 417
BglI	GCCNNNNNGGC	1 cut(s)	428
BisI	GCNGC	6 cut(s)	176, 252, 305, 499, 891, 935
BlsI	GCNGC	6 cut(s)	177, 253, 306, 500, 892, 936
Bme1390I	CCNGG	1 cut(s)	424
Bme18I	GGWCC	2 cut(s)	145, 731
BmgT120I	GGNCC	3 cut(s)	145, 641, 731
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	424
BmsI	GCATC	6 cut(s)	238, 553, 720, 877, 1004, 1060
BpiI	GAAGAC	1 cut(s)	1012
Bpu10I	CCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	56, 708
BsaBI	GATNNNNATC	1 cut(s)	96
BsaJI	CCNNGG	3 cut(s)	345, 423, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 634, 635
Bse1I	ACTGG	2 cut(s)	238, 888
Bse21I	CCTNAGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	424
BseDI	CCNNGG	3 cut(s)	345, 423, 925
BseGI	GGATG	5 cut(s)	46, 109, 352, 857, 892
BseJI	GATNNNNATC	1 cut(s)	96
BseLI	CCNNNNNNNGG	3 cut(s)	213, 634, 635
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	38, 564
BseNI	ACTGG	2 cut(s)	238, 888
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	5 cut(s)	187, 238, 291, 877, 921
BsgI	GTGCAG	2 cut(s)	876, 1064
Bsh1236I	CGCG	1 cut(s)	501
BshFI	GGCC	2 cut(s)	5, 642
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	213, 634, 635
BsmAI	GTCTC	1 cut(s)	967
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	2 cut(s)	747, 953
BsnI	GGCC	2 cut(s)	5, 642
Bsp1286I	GDGCHC	1 cut(s)	1062
Bsp143I	GATC	5 cut(s)	91, 97, 187, 652, 987
BspACI	CCGC	5 cut(s)	20, 32, 499, 737, 839
BspANI	GGCC	2 cut(s)	5, 642
BspCNI	CTCAG	2 cut(s)	37, 565
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	309
BspQI	GCTCTTC	2 cut(s)	165, 261
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	238, 888
BssECI	CCNNGG	3 cut(s)	345, 423, 925
BssMI	GATC	5 cut(s)	91, 97, 187, 652, 987
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	2 cut(s)	345, 925
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	424
Bst4CI	ACNGT	3 cut(s)	155, 784, 973
Bst6I	CTCTTC	3 cut(s)	165, 261, 585
BstC8I	GCNNGC	1 cut(s)	932
BstDEI	CTNAG	3 cut(s)	24, 567, 573
BstEII	GGTNACC	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	211
BstF5I	GGATG	5 cut(s)	46, 109, 352, 857, 892
BstFNI	CGCG	1 cut(s)	501
BstKTI	GATC	5 cut(s)	94, 100, 190, 655, 990
BstMAI	GTCTC	1 cut(s)	967
BstMBI	GATC	5 cut(s)	91, 97, 187, 652, 987
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 734, 818
BstNI	CCWGG	1 cut(s)	424
BstNSI	RCATGY	1 cut(s)	794
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	422
BstSFI	CTRYAG	2 cut(s)	305, 417
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	5 cut(s)	187, 238, 291, 877, 921
BstV2I	GAAGAC	1 cut(s)	1012
Bsu36I	CCTNAGG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	5, 642
BtsCI	GGATG	5 cut(s)	46, 109, 352, 857, 892
BtsIMutI	CAGTG	4 cut(s)	431, 780, 1023, 1062
Cac8I	GCNNGC	1 cut(s)	932
CciI	TCATGA	1 cut(s)	94
Cfr13I	GGNCC	3 cut(s)	145, 641, 731
Csp6I	GTAC	2 cut(s)	503, 814
CviAII	CATG	9 cut(s)	95, 338, 371, 463, 645, 791, 824, 846, 1055
CviQI	GTAC	2 cut(s)	503, 814
DdeI	CTNAG	3 cut(s)	24, 567, 573
DpnI	GATC	5 cut(s)	93, 99, 189, 654, 989
DpnII	GATC	5 cut(s)	91, 97, 187, 652, 987
Eam1104I	CTCTTC	3 cut(s)	165, 261, 585
EarI	CTCTTC	3 cut(s)	165, 261, 585
EciI	GGCGGA	1 cut(s)	9
Eco130I	CCWWGG	2 cut(s)	345, 925
Eco24I	GRGCYC	1 cut(s)	1062
Eco32I	GATATC	1 cut(s)	760
Eco47I	GGWCC	2 cut(s)	145, 731
Eco57I	CTGAAG	3 cut(s)	455, 609, 1047
Eco81I	CCTNAGG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	211
EcoO65I	GGTNACC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	422
EcoRV	GATATC	1 cut(s)	760
EcoT14I	CCWWGG	2 cut(s)	345, 925
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	2 cut(s)	345, 925
FaeI	CATG	9 cut(s)	98, 341, 374, 466, 648, 794, 827, 849, 1058
FalI	AAGNNNNNCTT	4 cut(s)	746, 778, 974, 1006
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	9 cut(s)	94, 337, 370, 462, 644, 790, 823, 845, 1054
FauI	CCCGC	1 cut(s)	730
FbaI	TGATCA	2 cut(s)	91, 97
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	6 cut(s)	176, 252, 305, 499, 891, 935
FokI	GGATG	5 cut(s)	53, 116, 339, 864, 899
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	6 cut(s)	176, 252, 305, 499, 891, 935
FspBI	CTAG	2 cut(s)	260, 899
GluI	GCNGC	6 cut(s)	176, 252, 305, 499, 891, 935
HaeIII	GGCC	2 cut(s)	5, 642
Hin1II	CATG	9 cut(s)	98, 341, 374, 466, 648, 794, 827, 849, 1058
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HinfI	GANTC	6 cut(s)	263, 341, 669, 842, 910, 921
HpaI	GTTAAC	1 cut(s)	979
HphI	GGTGA	6 cut(s)	146, 167, 301, 419, 686, 757
Hpy166II	GTNNAC	3 cut(s)	417, 816, 979
Hpy188I	TCNGA	2 cut(s)	85, 535
Hpy188III	TCNNGA	6 cut(s)	95, 101, 245, 260, 521, 914
Hpy8I	GTNNAC	3 cut(s)	417, 816, 979
HpyAV	CCTTC	3 cut(s)	16, 294, 404
HpyCH4III	ACNGT	3 cut(s)	155, 784, 973
HpyCH4IV	ACGT	2 cut(s)	60, 618
HpyCH4V	TGCA	7 cut(s)	223, 307, 648, 893, 953, 1073, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 734, 818
HpyF3I	CTNAG	3 cut(s)	24, 567, 573
HpySE526I	ACGT	2 cut(s)	60, 618
Hsp92II	CATG	9 cut(s)	98, 341, 374, 466, 648, 794, 827, 849, 1058
Ksp22I	TGATCA	2 cut(s)	91, 97
KspAI	GTTAAC	1 cut(s)	979
Kzo9I	GATC	5 cut(s)	91, 97, 187, 652, 987
LguI	GCTCTTC	2 cut(s)	165, 261
Lsp1109I	GCAGC	5 cut(s)	187, 238, 291, 877, 921
LweI	GCATC	6 cut(s)	238, 553, 720, 877, 1004, 1060
MaeI	CTAG	2 cut(s)	260, 899
MaeII	ACGT	2 cut(s)	60, 618
MaeIII	GTNAC	3 cut(s)	134, 619, 718
MalI	GATC	5 cut(s)	93, 99, 189, 654, 989
MboI	GATC	5 cut(s)	91, 97, 187, 652, 987
MboII	GAAGA	8 cut(s)	170, 182, 248, 602, 754, 982, 1012, 1040
MfeI	CAATTG	1 cut(s)	630
MhlI	GDGCHC	1 cut(s)	1062
MluCI	AATT	3 cut(s)	326, 490, 630
MlyI	GAGTC	2 cut(s)	257, 350
MmeI	TCCRAC	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	745
MseI	TTAA	1 cut(s)	978
MslI	CAYNNNNRTG	2 cut(s)	444, 850
MspA1I	CMGCKG	1 cut(s)	737
MspR9I	CCNGG	1 cut(s)	424
MunI	CAATTG	1 cut(s)	630
Mva1269I	GAATGC	2 cut(s)	747, 953
MvaI	CCWGG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	3 cut(s)	428, 734, 818
NdeII	GATC	5 cut(s)	91, 97, 187, 652, 987
NlaIII	CATG	9 cut(s)	98, 341, 374, 466, 648, 794, 827, 849, 1058
NlaIV	GGNNCC	1 cut(s)	30
NmuCI	GTSAC	2 cut(s)	134, 718
NspI	RCATGY	1 cut(s)	794
OliI	CACNNNNGTG	1 cut(s)	444
PagI	TCATGA	1 cut(s)	94
PciI	ACATGT	1 cut(s)	790
PciSI	GCTCTTC	2 cut(s)	165, 261
PctI	GAATGC	2 cut(s)	747, 953
PdmI	GAANNNNTTC	1 cut(s)	745
PfeI	GAWTC	4 cut(s)	669, 842, 910, 921
PkrI	GCNGC	6 cut(s)	177, 253, 306, 500, 892, 936
PleI	GAGTC	2 cut(s)	257, 349
PpsI	GAGTC	2 cut(s)	257, 349
PscI	ACATGT	1 cut(s)	790
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	422
PspEI	GGTNACC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	3 cut(s)	145, 641, 731
PstI	CTGCAG	1 cut(s)	309
RsaI	GTAC	2 cut(s)	504, 815
RsaNI	GTAC	2 cut(s)	503, 814
RseI	CAYNNNNRTG	2 cut(s)	444, 850
SapI	GCTCTTC	2 cut(s)	165, 261
SaqAI	TTAA	1 cut(s)	978
SatI	GCNGC	6 cut(s)	176, 252, 305, 499, 891, 935
Sau3AI	GATC	5 cut(s)	91, 97, 187, 652, 987
Sau96I	GGNCC	3 cut(s)	145, 641, 731
SchI	GAGTC	2 cut(s)	257, 350
ScrFI	CCNGG	1 cut(s)	424
SduI	GDGCHC	1 cut(s)	1062
SfaNI	GCATC	6 cut(s)	238, 553, 720, 877, 1004, 1060
SfcI	CTRYAG	2 cut(s)	305, 417
SinI	GGWCC	2 cut(s)	145, 731
SmiMI	CAYNNNNRTG	2 cut(s)	444, 850
SmlI	CTYRAG	2 cut(s)	35, 723
SmoI	CTYRAG	2 cut(s)	35, 723
Sse9I	AATT	3 cut(s)	326, 490, 630
SsiI	CCGC	5 cut(s)	20, 32, 499, 737, 839
SspMI	CTAG	2 cut(s)	260, 899
StyD4I	CCNGG	1 cut(s)	422
StyI	CCWWGG	2 cut(s)	345, 925
TaaI	ACNGT	3 cut(s)	155, 784, 973
TaiI	ACGT	2 cut(s)	63, 621
TaqI	TCGA	3 cut(s)	180, 266, 968
TasI	AATT	3 cut(s)	326, 490, 630
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	4 cut(s)	669, 842, 910, 921
Tru1I	TTAA	1 cut(s)	978
Tru9I	TTAA	1 cut(s)	978
TscAI	CASTG	4 cut(s)	438, 787, 1030, 1069
TseFI	GTSAC	2 cut(s)	134, 718
TseI	GCWGC	5 cut(s)	175, 251, 304, 890, 934
Tsp45I	GTSAC	2 cut(s)	134, 718
TspDTI	ATGAA	6 cut(s)	339, 341, 382, 387, 834, 946
TspRI	CASTG	4 cut(s)	438, 787, 1030, 1069
VpaK11BI	GGWCC	2 cut(s)	145, 731
XagI	CCTNNNNNAGG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	326
XbaI	TCTAGA	1 cut(s)	259
XceI	RCATGY	1 cut(s)	794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	745
XspI	CTAG	2 cut(s)	260, 899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.