Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Forward (+)

23983980 .. 23987572

Gene Structure 3593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGAGAGGCTGTTGAGTTTTACCATCTAAACGGTTTCTTGTCATCAAAATTTGATCGTCAGGACGAAGTGCTCATCAACAGTAACGTTATCGGTAACATTAACCATGAAGATATAGATGGTTCAGGCAGCTGGTACGAAGAGACCATTGACGATGATCTGAAATGGTCATTTGCTCTTAATGGTGTGCTGCACAAGGGGGTGAGCGAGTTTCAGGAGATAGCTTTGTTGGATACCAAGCGTTTTGGCAAGGTACTGGTGATTGATGGGAAGATGCAGAGTGCAGAAGTGGACGAGTTTATATATCATGAATGCTTAATACATCCTGCCCTTTTATCTCACCCAAAGCCTAACAATGTGTTCATTATGGGAGGTGGGGAAGGTTCAGCAGCAAGAGAAGCCCTTAAGCACAAATTACTTGAAAAAGTGGTTATGTGTGATATAGATCAGGAGGTGGTTGATTTCTGTCGCAGGCATTTGACAGTGAACAAGGAGGCCTTTGCTCACAATAAGCTTAACCTTGTTATCAATGATGCCAAGGCTGAATTGGATAAGAGCTGCGAAAAATTCGATATCATAGTGGGAGATTTAGCAGACCCAGTTGAAGGAGGGCCTTGCTATCAGCTTTACACAAAATCCTTCTATGAGAAAGTTCTCAAACCCAAGCTTAATCATGGTGGCATTTTTGTGACCCAGGCTGGACCAGCAGGCATTTTCACCCACAAAGAGGTCTTCACCTCTATATTCAACACCATCAAACAGGTCTTCAAGTACGTTGTTGTTTATGCAGCTCATGTACCTTCTTTTGCCGATACATGGGGATGGGTCATGGCCTCGGATGAACCTTTCTCTATGAATGCTGAGAAAATGGACAAAAGGATCGAGGAAAGAATTGACGGGGAGTTGAACTACTTGAATGGTGCTCTGTTCATGTCCTCTGCAACCATGAACAAAACTGTTTCTTCATCGTTACTGAACGAAACTCATGTCTATACTGAGGAAGATGCAAGGTTTATTCATGGACATGGGGTCGCTTACCGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

349

Amino Acids

39.15

Weight (kDa)

5.25

Isoelectric Point (pI)

34.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	45 - 96	1.7e-12	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	99 - 281	3.9e-43	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1039
AclI	AACGTT	1 cut(s)	87
AclWI	GGATC	1 cut(s)	887
AcsI	RAATTY	2 cut(s)	50, 566
AfaI	GTAC	4 cut(s)	137, 255, 773, 798
AfiI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	422, 605, 748, 769, 907, 916
AhdI	GACNNNNNGTC	1 cut(s)	1028
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	7 cut(s)	132, 224, 514, 558, 625, 667, 791
AluI	AGCT	7 cut(s)	132, 224, 514, 558, 625, 667, 791
Alw21I	GWGCWC	2 cut(s)	75, 925
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	887
AoxI	GGCC	3 cut(s)	495, 611, 831
ApeKI	GCWGC	5 cut(s)	129, 190, 389, 558, 788
ApoI	RAATTY	2 cut(s)	50, 566
ArsI	GACNNNNNNTTYG	2 cut(s)	972, 1004
AspS9I	GGNCC	2 cut(s)	611, 701
AsuHPI	GGTGA	5 cut(s)	214, 271, 332, 709, 727
AvaII	GGWCC	1 cut(s)	701
BbsI	GAAGAC	2 cut(s)	724, 757
Bbv12I	GWGCWC	2 cut(s)	75, 925
BbvI	GCAGC	5 cut(s)	141, 177, 401, 545, 800
BccI	CCATC	5 cut(s)	33, 113, 260, 761, 816
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	1045
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	5 cut(s)	130, 191, 390, 559, 789
BlsI	GCNGC	5 cut(s)	131, 192, 391, 560, 790
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	701
BmeRI	GACNNNNNGTC	1 cut(s)	1028
BmgT120I	GGNCC	2 cut(s)	611, 701
BmrFI	CCNGG	1 cut(s)	695
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	3 cut(s)	264, 523, 994
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	724, 757
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	537, 693, 834
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 727, 816
Bse1I	ACTGG	2 cut(s)	261, 599
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	3 cut(s)	537, 693, 834
BseGI	GGATG	3 cut(s)	322, 827, 844
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
BseMII	CTCAG	2 cut(s)	852, 987
BseNI	ACTGG	2 cut(s)	261, 599
BseXI	GCAGC	5 cut(s)	141, 177, 401, 545, 800
BsgI	GTGCAG	2 cut(s)	176, 303
BshFI	GGCC	3 cut(s)	497, 613, 833
BsiHKAI	GWGCWC	2 cut(s)	75, 925
BslI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	317, 862
BsnI	GGCC	3 cut(s)	497, 613, 833
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	75, 925
Bsp143I	GATC	4 cut(s)	55, 157, 445, 879
BspACI	CCGC	1 cut(s)	1039
BspANI	GGCC	3 cut(s)	497, 613, 833
BspCNI	CTCAG	2 cut(s)	853, 988
BspHI	TCATGA	1 cut(s)	307
BspPI	GGATC	1 cut(s)	887
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	261, 599
BssECI	CCNNGG	3 cut(s)	537, 693, 834
BssMI	GATC	4 cut(s)	55, 157, 445, 879
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	4 cut(s)	35, 83, 484, 958
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	473, 709
BstDEI	CTNAG	2 cut(s)	861, 996
BstF5I	GGATG	3 cut(s)	322, 827, 844
BstKTI	GATC	4 cut(s)	58, 160, 448, 882
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	55, 157, 445, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 704
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstV1I	GCAGC	5 cut(s)	141, 177, 401, 545, 800
BstV2I	GAAGAC	2 cut(s)	724, 757
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	497, 613, 833
BtsCI	GGATG	3 cut(s)	322, 827, 844
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	473, 709
CciI	TCATGA	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	611, 701
Csp6I	GTAC	4 cut(s)	136, 254, 772, 797
CviQI	GTAC	4 cut(s)	136, 254, 772, 797
DdeI	CTNAG	2 cut(s)	861, 996
DpnI	GATC	4 cut(s)	57, 159, 447, 881
DpnII	GATC	4 cut(s)	55, 157, 445, 879
DriI	GACNNNNNGTC	1 cut(s)	1028
Eam1104I	CTCTTC	1 cut(s)	135
Eam1105I	GACNNNNNGTC	1 cut(s)	1028
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	693
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
Fnu4HI	GCNGC	5 cut(s)	130, 191, 390, 559, 789
FokI	GGATG	3 cut(s)	309, 834, 851
Fsp4HI	GCNGC	5 cut(s)	130, 191, 390, 559, 789
FspBI	CTAG	1 cut(s)	1045
GluI	GCNGC	5 cut(s)	130, 191, 390, 559, 789
HaeIII	GGCC	3 cut(s)	497, 613, 833
HindIII	AAGCTT	2 cut(s)	512, 665
HphI	GGTGA	5 cut(s)	214, 271, 332, 709, 727
Hpy166II	GTNNAC	2 cut(s)	292, 487
Hpy188I	TCNGA	2 cut(s)	162, 838
Hpy188III	TCNNGA	4 cut(s)	62, 215, 308, 449
Hpy8I	GTNNAC	2 cut(s)	292, 487
HpyAV	CCTTC	4 cut(s)	374, 599, 649, 810
HpyCH4III	ACNGT	4 cut(s)	35, 83, 484, 958
HpyCH4IV	ACGT	2 cut(s)	87, 774
HpyCH4V	TGCA	6 cut(s)	193, 277, 284, 788, 941, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 704
HpyF3I	CTNAG	2 cut(s)	861, 996
HpySE526I	ACGT	2 cut(s)	87, 774
Kzo9I	GATC	4 cut(s)	55, 157, 445, 879
Lsp1109I	GCAGC	5 cut(s)	141, 177, 401, 545, 800
LweI	GCATC	3 cut(s)	264, 523, 994
MaeI	CTAG	1 cut(s)	1045
MaeII	ACGT	2 cut(s)	87, 774
MaeIII	GTNAC	4 cut(s)	83, 95, 688, 969
MalI	GATC	4 cut(s)	57, 159, 447, 881
MboI	GATC	4 cut(s)	55, 157, 445, 879
MboII	GAAGA	7 cut(s)	122, 152, 283, 724, 757, 954, 1013
MhlI	GDGCHC	2 cut(s)	75, 925
MluCI	AATT	5 cut(s)	50, 413, 545, 566, 891
MmeI	TCCRAC	1 cut(s)	210
MseI	TTAA	6 cut(s)	102, 180, 317, 405, 516, 669
MslI	CAYNNNNRTG	3 cut(s)	686, 820, 1023
MspA1I	CMGCKG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	2 cut(s)	317, 862
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	398, 704
NdeII	GATC	4 cut(s)	55, 157, 445, 879
NmuCI	GTSAC	1 cut(s)	688
PagI	TCATGA	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	497
PctI	GAATGC	2 cut(s)	317, 862
PkrI	GCNGC	5 cut(s)	131, 192, 391, 560, 790
Psp1406I	AACGTT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspPI	GGNCC	2 cut(s)	611, 701
PvuII	CAGCTG	1 cut(s)	132
RsaI	GTAC	4 cut(s)	137, 255, 773, 798
RsaNI	GTAC	4 cut(s)	136, 254, 772, 797
RseI	CAYNNNNRTG	3 cut(s)	686, 820, 1023
SaqAI	TTAA	6 cut(s)	102, 180, 317, 405, 516, 669
SatI	GCNGC	5 cut(s)	130, 191, 390, 559, 789
Sau3AI	GATC	4 cut(s)	55, 157, 445, 879
Sau96I	GGNCC	2 cut(s)	611, 701
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	2 cut(s)	75, 925
SfaNI	GCATC	3 cut(s)	264, 523, 994
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	3 cut(s)	686, 820, 1023
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	5 cut(s)	50, 413, 545, 566, 891
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	1039
SspMI	CTAG	1 cut(s)	1045
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	4 cut(s)	35, 83, 484, 958
TaiI	ACGT	2 cut(s)	90, 777
TaqI	TCGA	2 cut(s)	570, 882
TasI	AATT	5 cut(s)	50, 413, 545, 566, 891
Tru1I	TTAA	6 cut(s)	102, 180, 317, 405, 516, 669
Tru9I	TTAA	6 cut(s)	102, 180, 317, 405, 516, 669
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	5 cut(s)	129, 190, 389, 558, 788
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	9 cut(s)	123, 324, 352, 855, 869, 919, 954, 962, 1007
TspRI	CASTG	1 cut(s)	489
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	2 cut(s)	50, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XspI	CTAG	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.