Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Forward (+)

85129507 .. 85133835

Gene Structure 4329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00147190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGACCCACCTCTCGACACCGTGCCGGCAAATGGATATGTTTGCTATTTGGACTGAAGAAATGGAATCAAACTTTGGTCTGAAGAACAGAGGCCTTTCTCATGCCACGGAAGCATGGGGGAAAGTTCTGGTGATTGATGGAAAGCTGCAGGGTGCTGAAAATGATGAGTTTATTTACCATGAGTCCTTGGTTCATCCTGCTCTTTTGCTCCATGAAAACCCCAAAACCATATTCATAATGGGAGGTGGTGAAGGGTCAACAGCAAGGGAGGCACTGAAGCACAAAGATGTGGAGAAAGTTATCATGTGTGATATAGATGAGGTGATTGTCAATTTTTGCCGTGCACATCTGGAAGAAAATCACGAGGCGTTTTCTGATAATAGGCTTCAACTGGTTTTCAATGATGCTAAGGTTGAGTTGGAGAAAACTGAAGAGAAGTTTGATGTGATTGTGGGAGACCTACCAGATCCAATTGAGGGAGGGCCTTGCAATAATCTTTACACCAAAAACTTTTATGAGCAAGTCATAAAACCTCACCTCAAAGACAATGGCATCTTTGTCACTCAAGCTGGTCCAGCAGGAATTCTTTCTCATAAGGCTATCTTCACTTCAATATACAACACTGTAAAACAAGTGGTCAAATGTATGCTTTTGAAAGGAACTAATGTCTTCACTGAAGAAACTACAGAGTTCTGCCAGGGACATGGAGTCACTGATGATGCCCAGGGCAATCTGAGGTCTAAATGTCAATTCAGCTTCAGCAAGAGGGCAGGGAGAACAGCGAAAAAGGGATATCAAGGAATTCAGATCCCACTTCAAGCCTATGCTTTAAGCCTGCCAAATTTTCCGATCTTCATTAAGCCACATTTGGATTTTGGAAACCAGAACAATACAGTGCACTTACAGCACCGCTTCCAAATGTGTCATAATCCAGCAGCAAAGAGACAATGCCCAGGGGTCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

321

Amino Acids

36.05

Weight (kDa)

6.2

Isoelectric Point (pI)

27.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synth	PF01564	56 - 214	1.8e-40	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	910
AclWI	GGATC	2 cut(s)	461, 802
AcsI	RAATTY	3 cut(s)	582, 801, 841
AcuI	CTGAAG	6 cut(s)	75, 101, 296, 450, 696, 742
AfiI	CCNNNNNNNGG	2 cut(s)	31, 476
AgsI	TTSAA	5 cut(s)	389, 400, 612, 655, 818
AhdI	GACNNNNNGTC	1 cut(s)	707
AjnI	CCWGG	3 cut(s)	696, 723, 952
AjuI	GAANNNNNNNTTGG	4 cut(s)	57, 89, 215, 247
AluBI	AGCT	3 cut(s)	145, 569, 756
AluI	AGCT	3 cut(s)	145, 569, 756
Alw21I	GWGCWC	2 cut(s)	346, 900
Alw26I	GTCTC	2 cut(s)	450, 937
Alw44I	GTGCAC	2 cut(s)	342, 896
AlwI	GGATC	2 cut(s)	461, 802
AoxI	GGCC	2 cut(s)	91, 482
ApaLI	GTGCAC	2 cut(s)	342, 896
ApeKI	GCWGC	2 cut(s)	145, 935
ApoI	RAATTY	3 cut(s)	582, 801, 841
Asp700I	GAANNNNTTC	1 cut(s)	586
AspS9I	GGNCC	3 cut(s)	482, 572, 958
AsuHPI	GGTGA	4 cut(s)	142, 260, 334, 527
AvaII	GGWCC	2 cut(s)	572, 958
BaeGI	GKGCMC	2 cut(s)	346, 900
BauI	CACGAG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	2 cut(s)	346, 900
BbvI	GCAGC	2 cut(s)	132, 947
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	324
BciT130I	CCWGG	3 cut(s)	698, 725, 954
BcoDI	GTCTC	2 cut(s)	450, 937
BfmI	CTRYAG	2 cut(s)	146, 684
BisI	GCNGC	2 cut(s)	146, 936
BlsI	GCNGC	2 cut(s)	147, 937
Bme1390I	CCNGG	3 cut(s)	698, 725, 954
Bme18I	GGWCC	2 cut(s)	572, 958
BmeRI	GACNNNNNGTC	1 cut(s)	707
BmgT120I	GGNCC	3 cut(s)	482, 572, 958
BmiI	GGNNCC	2 cut(s)	959, 960
BmrFI	CCNGG	3 cut(s)	698, 725, 954
BmsI	GCATC	3 cut(s)	394, 561, 709
BpiI	GAAGAC	1 cut(s)	661
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	549
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	7 cut(s)	105, 186, 697, 723, 724, 952, 953
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 476
Bse118I	RCCGGY	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	396
BseBI	CCWGG	3 cut(s)	698, 725, 954
BseDI	CCNNGG	7 cut(s)	105, 186, 697, 723, 724, 952, 953
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	31, 476
BseMII	CTCAG	1 cut(s)	725
BseNI	ACTGG	1 cut(s)	396
BseSI	GKGCMC	2 cut(s)	346, 900
BseXI	GCAGC	2 cut(s)	132, 947
BshFI	GGCC	2 cut(s)	93, 484
BsiHKAI	GWGCWC	2 cut(s)	346, 900
BsiSI	CCGG	1 cut(s)	25
BslFI	GGGAC	2 cut(s)	714, 944
BslI	CCNNNNNNNGG	2 cut(s)	31, 476
BsmAI	GTCTC	2 cut(s)	450, 937
BsmFI	GGGAC	2 cut(s)	714, 944
BsnI	GGCC	2 cut(s)	93, 484
Bso31I	GGTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	346, 900
Bsp143I	GATC	3 cut(s)	466, 807, 849
BspACI	CCGC	1 cut(s)	910
BspANI	GGCC	2 cut(s)	93, 484
BspCNI	CTCAG	1 cut(s)	726
BspLI	GGNNCC	2 cut(s)	959, 960
BspMAI	CTGCAG	1 cut(s)	150
BspPI	GGATC	2 cut(s)	461, 802
BspTNI	GGTCTC	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	24
BssECI	CCNNGG	7 cut(s)	105, 186, 697, 723, 724, 952, 953
BssMI	GATC	3 cut(s)	466, 807, 849
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	186
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	3 cut(s)	698, 725, 954
Bst4CI	ACNGT	3 cut(s)	21, 625, 895
Bst6I	CTCTTC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	26, 836
BstDEI	CTNAG	2 cut(s)	408, 734
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	469, 810, 852
BstMAI	GTCTC	2 cut(s)	450, 937
BstMBI	GATC	3 cut(s)	466, 807, 849
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 269, 575, 904
BstNI	CCWGG	3 cut(s)	698, 725, 954
BstSCI	CCNGG	3 cut(s)	696, 723, 952
BstSFI	CTRYAG	2 cut(s)	146, 684
BstSLI	GKGCMC	2 cut(s)	346, 900
BstV1I	GCAGC	2 cut(s)	132, 947
BstV2I	GAAGAC	1 cut(s)	661
BstX2I	RGATCY	2 cut(s)	466, 807
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	2 cut(s)	466, 807
BsuRI	GGCC	2 cut(s)	93, 484
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	5 cut(s)	272, 621, 672, 711, 900
Cac8I	GCNNGC	2 cut(s)	26, 836
Cfr10I	RCCGGY	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	482, 572, 958
CviAII	CATG	6 cut(s)	101, 114, 179, 212, 304, 704
DdeI	CTNAG	2 cut(s)	408, 734
DpnI	GATC	3 cut(s)	468, 809, 851
DpnII	GATC	3 cut(s)	466, 807, 849
DriI	GACNNNNNGTC	1 cut(s)	707
Eam1104I	CTCTTC	1 cut(s)	426
Eam1105I	GACNNNNNGTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	186
Eco147I	AGGCCT	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	794
Eco47I	GGWCC	2 cut(s)	572, 958
Eco57I	CTGAAG	6 cut(s)	75, 101, 296, 450, 696, 742
EcoO109I	RGGNCCY	2 cut(s)	482, 958
EcoRI	GAATTC	2 cut(s)	582, 801
EcoRII	CCWGG	3 cut(s)	696, 723, 952
EcoRV	GATATC	1 cut(s)	794
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	6 cut(s)	104, 117, 182, 215, 307, 707
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	2 cut(s)	714, 944
FatI	CATG	6 cut(s)	100, 113, 178, 211, 303, 703
Fnu4HI	GCNGC	2 cut(s)	146, 936
FokI	GGATG	1 cut(s)	180
Fsp4HI	GCNGC	2 cut(s)	146, 936
GluI	GCNGC	2 cut(s)	146, 936
HaeIII	GGCC	2 cut(s)	93, 484
HapII	CCGG	1 cut(s)	25
Hin1II	CATG	6 cut(s)	104, 117, 182, 215, 307, 707
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	3 cut(s)	65, 182, 708
HpaII	CCGG	1 cut(s)	25
HphI	GGTGA	4 cut(s)	142, 260, 334, 527
Hpy166II	GTNNAC	3 cut(s)	258, 344, 898
Hpy188I	TCNGA	5 cut(s)	81, 376, 735, 807, 849
Hpy188III	TCNNGA	3 cut(s)	13, 350, 362
Hpy8I	GTNNAC	3 cut(s)	258, 344, 898
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	21, 625, 895
HpyCH4V	TGCA	4 cut(s)	148, 344, 489, 898
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 269, 575, 904
HpyF3I	CTNAG	2 cut(s)	408, 734
Hsp92II	CATG	6 cut(s)	104, 117, 182, 215, 307, 707
KflI	GGGWCCC	1 cut(s)	958
KroI	GCCGGC	1 cut(s)	24
KroNI	GCCGGC	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	466, 807, 849
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	2 cut(s)	132, 947
LweI	GCATC	3 cut(s)	394, 561, 709
MaeIII	GTNAC	2 cut(s)	559, 709
MalI	GATC	3 cut(s)	468, 809, 851
MboI	GATC	3 cut(s)	466, 807, 849
MboII	GAAGA	8 cut(s)	68, 94, 365, 443, 595, 661, 689, 844
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	2 cut(s)	466, 807
MhlI	GDGCHC	2 cut(s)	346, 900
MluCI	AATT	6 cut(s)	331, 471, 582, 749, 801, 841
MlyI	GAGTC	2 cut(s)	191, 717
MmeI	TCCRAC	1 cut(s)	399
MroNI	GCCGGC	1 cut(s)	24
MroXI	GAANNNNTTC	1 cut(s)	586
MseI	TTAA	2 cut(s)	830, 858
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	1 cut(s)	25
MspR9I	CCNGG	3 cut(s)	698, 725, 954
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	698, 725, 954
MwoI	GCNNNNNNNGC	4 cut(s)	110, 269, 575, 904
NaeI	GCCGGC	1 cut(s)	26
NdeII	GATC	3 cut(s)	466, 807, 849
NgoMIV	GCCGGC	1 cut(s)	24
NlaIII	CATG	6 cut(s)	104, 117, 182, 215, 307, 707
NlaIV	GGNNCC	2 cut(s)	959, 960
NmuCI	GTSAC	2 cut(s)	559, 709
PasI	CCCWGGG	2 cut(s)	724, 953
PceI	AGGCCT	1 cut(s)	93
PdiI	GCCGGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	586
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	147, 937
PleI	GAGTC	2 cut(s)	190, 716
PpsI	GAGTC	2 cut(s)	190, 716
PpuMI	RGGWCCY	1 cut(s)	958
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	3 cut(s)	696, 723, 952
PspGI	CCWGG	3 cut(s)	696, 723, 952
PspN4I	GGNNCC	2 cut(s)	959, 960
PspPI	GGNCC	3 cut(s)	482, 572, 958
PspPPI	RGGWCCY	1 cut(s)	958
PstI	CTGCAG	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	466, 807
RseI	CAYNNNNRTG	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	830, 858
SatI	GCNGC	2 cut(s)	146, 936
Sau3AI	GATC	3 cut(s)	466, 807, 849
Sau96I	GGNCC	3 cut(s)	482, 572, 958
SchI	GAGTC	2 cut(s)	191, 717
ScrFI	CCNGG	3 cut(s)	698, 725, 954
SduI	GDGCHC	2 cut(s)	346, 900
SfaNI	GCATC	3 cut(s)	394, 561, 709
SfcI	CTRYAG	2 cut(s)	146, 684
SinI	GGWCC	2 cut(s)	572, 958
SmiMI	CAYNNNNRTG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	564
SmoI	CTYRAG	1 cut(s)	564
Sse9I	AATT	6 cut(s)	331, 471, 582, 749, 801, 841
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	910
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	3 cut(s)	696, 723, 952
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	21, 625, 895
TaqI	TCGA	1 cut(s)	14
TasI	AATT	6 cut(s)	331, 471, 582, 749, 801, 841
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	2 cut(s)	830, 858
Tru9I	TTAA	2 cut(s)	830, 858
TscAI	CASTG	5 cut(s)	279, 628, 679, 718, 900
TseFI	GTSAC	2 cut(s)	559, 709
TseI	GCWGC	2 cut(s)	145, 935
Tsp45I	GTSAC	2 cut(s)	559, 709
TspDTI	ATGAA	4 cut(s)	182, 223, 228, 844
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	5 cut(s)	279, 628, 679, 718, 900
VneI	GTGCAC	2 cut(s)	342, 896
VpaK11BI	GGWCC	2 cut(s)	572, 958
XapI	RAATTY	3 cut(s)	582, 801, 841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmnI	GAANNNNTTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.