Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Reverse (-)

67118063 .. 67120688

Gene Structure 2626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGAGAGGCTGTTGAGTTTTTCCATCTAAACGGTTTCTTGTCATCAAAATTTGATCGTCATGACGAAGTACTCATCAACAATAACGTTAACGGTAACATTAACCTTGAAGATGTAGATGGTTCTGGCAGCTGGTACGAAGAGACCATTGACGATGATCTGAAATGGTCATTTGCTCTTAATGGTGTTCTGCACAAGGGGGTGAGCGAGTATCAGGAGATAGCATTACTGGATACCAAGCGTTTTGGCAAGGTATTGGTGATTGATGGGAAGATGCAGAGTGCAGAAGTGGACGAGTTTATATATCATGAATGCTTAATACATCCTGCCCTTTTATCTCACCCAAAGCCTAAGAATGTGTTCATTATGGGAGGTGGGGAAGGGTCAGCTGCAAGAGAAGCCCTTAGGCACAAATTACTTGACAAAGTGGTTATGTGTGACATAGATCAGGAGGTGGTTGATTTCTGTCGCAGGCATTTGACAGTGAACCAAAAGGCCTTTGCTCACAATAAGCTTAACCTTGTTATCAATGATGCCAAGGCTGAATTGGATAAGAGCTGTGAAAAATTCGACATCATAGTGGGAGATTTAGCAGACCCAGTTGAAGGAGGGCCTTGCTATCAGCTTTACACAAAATCCTTCTATGAGAAAATTCTCAAACCCAAGCTTAATCATGGGGGCATTTTTGTGACCCAGGCTGGACCAGCGGGCATTTTCACCCACAAAGAGGTCTTCACCTCTATATTCAACACCATCAAACAGGTCTTCAAGTACGTTGTGGTTTATGCAGCTCACATACCTTCTTTTGCCGATACATGGGGATGGGTCATGGTATGTAAACTAAAGCTTGATTTGATCAAATTGCAAAAATGGTACCATCACTTTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009888 GO:0009914 GO:0009926 GO:0009987 GO:0010087 GO:0010089 GO:0010487 GO:0010817 GO:0016740 GO:0016765 GO:0016768 GO:0030154 GO:0032502 GO:0044424 GO:0044464 GO:0048759 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:1905177

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

296

Amino Acids

33.64

Weight (kDa)

5.95

Isoelectric Point (pI)

27.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spermine_synt_N	PF17284	45 - 96	6e-13	Spermidine synthase tetramerisation domain
Spermine_synth	PF01564	99 - 282	1.6e-43	Spermine/spermidine synthase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	873
AccB1I	GGYRCC	1 cut(s)	873
AciI	CCGC	1 cut(s)	707
AclI	AACGTT	1 cut(s)	87
AcsI	RAATTY	3 cut(s)	50, 566, 651
AfaI	GTAC	4 cut(s)	72, 137, 773, 875
AfiI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
AgsI	TTSAA	4 cut(s)	110, 605, 748, 769
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	8 cut(s)	132, 389, 514, 558, 625, 667, 791, 847
AluI	AGCT	8 cut(s)	132, 389, 514, 558, 625, 667, 791, 847
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	2 cut(s)	495, 611
ApeKI	GCWGC	3 cut(s)	129, 389, 788
ApoI	RAATTY	3 cut(s)	50, 566, 651
Asp700I	GAANNNNTTC	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	873
AspS9I	GGNCC	2 cut(s)	611, 701
AsuHPI	GGTGA	5 cut(s)	214, 271, 332, 709, 727
AvaII	GGWCC	1 cut(s)	701
AxyI	CCTNAGG	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	873
BbsI	GAAGAC	2 cut(s)	724, 757
BbvI	GCAGC	3 cut(s)	141, 376, 800
BccI	CCATC	6 cut(s)	33, 113, 260, 761, 816, 885
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	226
BclI	TGATCA	1 cut(s)	855
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	889
BfuI	GTATCC	1 cut(s)	226
BisI	GCNGC	3 cut(s)	130, 390, 789
BlsI	GCNGC	3 cut(s)	131, 391, 790
BmcAI	AGTACT	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	701
BmgT120I	GGNCC	2 cut(s)	611, 701
BmiI	GGNNCC	1 cut(s)	875
BmrFI	CCNGG	1 cut(s)	695
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	264, 523
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	2 cut(s)	724, 757
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	537, 693
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	605, 727, 816
Bse1I	ACTGG	2 cut(s)	234, 599
Bse21I	CCTNAGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	537, 693
BseGI	GGATG	2 cut(s)	322, 827
BseLI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
BseNI	ACTGG	2 cut(s)	234, 599
BseXI	GCAGC	3 cut(s)	141, 376, 800
BsgI	GTGCAG	2 cut(s)	176, 303
BshFI	GGCC	2 cut(s)	497, 613
BshNI	GGYRCC	1 cut(s)	873
BslI	CCNNNNNNNGG	3 cut(s)	605, 727, 816
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	2 cut(s)	497, 613
Bso31I	GGTCTC	1 cut(s)	137
Bsp143I	GATC	4 cut(s)	55, 157, 445, 855
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	2 cut(s)	497, 613
BspHI	TCATGA	2 cut(s)	61, 307
BspLI	GGNNCC	1 cut(s)	875
BspT107I	GGYRCC	1 cut(s)	873
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	234, 599
BssECI	CCNNGG	2 cut(s)	537, 693
BssMI	GATC	4 cut(s)	55, 157, 445, 855
BssT1I	CCWWGG	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	3 cut(s)	35, 95, 484
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	473, 709
BstDEI	CTNAG	2 cut(s)	351, 404
BstF5I	GGATG	2 cut(s)	322, 827
BstKTI	GATC	4 cut(s)	58, 160, 448, 858
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	55, 157, 445, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 704
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	693
BstV1I	GCAGC	3 cut(s)	141, 376, 800
BstV2I	GAAGAC	2 cut(s)	724, 757
Bsu36I	CCTNAGG	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	497, 613
BtsCI	GGATG	2 cut(s)	322, 827
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	2 cut(s)	473, 709
CciI	TCATGA	2 cut(s)	61, 307
Cfr13I	GGNCC	2 cut(s)	611, 701
Csp6I	GTAC	4 cut(s)	71, 136, 772, 874
CviAII	CATG	5 cut(s)	62, 308, 674, 816, 829
CviQI	GTAC	4 cut(s)	71, 136, 772, 874
DdeI	CTNAG	2 cut(s)	351, 404
DpnI	GATC	4 cut(s)	57, 159, 447, 857
DpnII	GATC	4 cut(s)	55, 157, 445, 855
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	497
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	701
Eco81I	CCTNAGG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	5 cut(s)	65, 311, 677, 819, 832
FatI	CATG	5 cut(s)	61, 307, 673, 815, 828
FauI	CCCGC	1 cut(s)	700
FbaI	TGATCA	1 cut(s)	855
Fnu4HI	GCNGC	3 cut(s)	130, 390, 789
FokI	GGATG	2 cut(s)	309, 834
Fsp4HI	GCNGC	3 cut(s)	130, 390, 789
FspBI	CTAG	1 cut(s)	889
GluI	GCNGC	3 cut(s)	130, 390, 789
HaeIII	GGCC	2 cut(s)	497, 613
Hin1II	CATG	5 cut(s)	65, 311, 677, 819, 832
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HindIII	AAGCTT	3 cut(s)	512, 665, 845
HpaI	GTTAAC	1 cut(s)	91
HphI	GGTGA	5 cut(s)	214, 271, 332, 709, 727
Hpy166II	GTNNAC	4 cut(s)	91, 292, 487, 839
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	4 cut(s)	62, 215, 308, 449
Hpy8I	GTNNAC	4 cut(s)	91, 292, 487, 839
HpyAV	CCTTC	4 cut(s)	374, 599, 649, 810
HpyCH4III	ACNGT	3 cut(s)	35, 95, 484
HpyCH4IV	ACGT	2 cut(s)	87, 774
HpyCH4V	TGCA	6 cut(s)	193, 277, 284, 392, 788, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 704
HpyF3I	CTNAG	2 cut(s)	351, 404
HpySE526I	ACGT	2 cut(s)	87, 774
Hsp92II	CATG	5 cut(s)	65, 311, 677, 819, 832
KpnI	GGTACC	1 cut(s)	877
Ksp22I	TGATCA	1 cut(s)	855
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	55, 157, 445, 855
Lsp1109I	GCAGC	3 cut(s)	141, 376, 800
LweI	GCATC	2 cut(s)	264, 523
MaeI	CTAG	1 cut(s)	889
MaeII	ACGT	2 cut(s)	87, 774
MaeIII	GTNAC	3 cut(s)	95, 437, 688
MalI	GATC	4 cut(s)	57, 159, 447, 857
MboI	GATC	4 cut(s)	55, 157, 445, 855
MboII	GAAGA	5 cut(s)	122, 152, 283, 724, 757
MluCI	AATT	6 cut(s)	50, 413, 545, 566, 651, 860
MnlI	CCTC	5 cut(s)	365, 445, 602, 721, 748
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	6 cut(s)	90, 102, 180, 317, 516, 669
MslI	CAYNNNNRTG	3 cut(s)	578, 686, 820
MspA1I	CMGCKG	3 cut(s)	132, 389, 707
MspR9I	CCNGG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	398, 704
NdeII	GATC	4 cut(s)	55, 157, 445, 855
NlaIII	CATG	5 cut(s)	65, 311, 677, 819, 832
NlaIV	GGNNCC	1 cut(s)	875
NmuCI	GTSAC	2 cut(s)	437, 688
PagI	TCATGA	2 cut(s)	61, 307
PceI	AGGCCT	1 cut(s)	497
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	131, 391, 790
Psp1406I	AACGTT	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	875
PspPI	GGNCC	2 cut(s)	611, 701
PvuII	CAGCTG	2 cut(s)	132, 389
RsaI	GTAC	4 cut(s)	72, 137, 773, 875
RsaNI	GTAC	4 cut(s)	71, 136, 772, 874
RseI	CAYNNNNRTG	3 cut(s)	578, 686, 820
SaqAI	TTAA	6 cut(s)	90, 102, 180, 317, 516, 669
SatI	GCNGC	3 cut(s)	130, 390, 789
Sau3AI	GATC	4 cut(s)	55, 157, 445, 855
Sau96I	GGNCC	2 cut(s)	611, 701
ScaI	AGTACT	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	695
SfaNI	GCATC	2 cut(s)	264, 523
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	3 cut(s)	578, 686, 820
Sse9I	AATT	6 cut(s)	50, 413, 545, 566, 651, 860
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	1 cut(s)	707
SspMI	CTAG	1 cut(s)	889
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	35, 95, 484
TaiI	ACGT	2 cut(s)	90, 777
TaqI	TCGA	1 cut(s)	570
TasI	AATT	6 cut(s)	50, 413, 545, 566, 651, 860
TatI	WGTACW	1 cut(s)	70
Tru1I	TTAA	6 cut(s)	90, 102, 180, 317, 516, 669
Tru9I	TTAA	6 cut(s)	90, 102, 180, 317, 516, 669
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	437, 688
TseI	GCWGC	3 cut(s)	129, 389, 788
Tsp45I	GTSAC	2 cut(s)	437, 688
TspDTI	ATGAA	2 cut(s)	324, 352
TspRI	CASTG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	3 cut(s)	50, 566, 651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	889
ZrmI	AGTACT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.