Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004438

Physical Location & Seq

Genomic Coordinates Forward (+)

18828272 .. 18831294

Gene Structure 3023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G202400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGCAGGCAAGACCAAGCTCAGGTGAAGCAAAAGTGGGATCCACATGCACATCTTAGAAAGAACAAAAAAGAAGAGGACCACTTCTCTGAGTTTGAATTAATCCCTGAGGAGGATAATTATCAGAACCCCCCAACTGGAAATGATCAGCAGCAACATGCTGAATGGTTTGAGGAGCAGCTGGAAGCTGATCTCAAATGGTCTTTTGCTTTGAATGGTGTGTTGCATGCAGCAACAAGCGAGTTCCAAGACATAGTTCTTTTGGACACAAAGCGATTTGGAAAGGCTCTGGTGATCGATGGGAAGTTGCAGAGTGCTGAAAGAGATGAGTTTATTTACCATGAATGCTTGGTTCATCCTGCTCTTTTACTACATGACAACCCAAAAACAATATTTATAATGGGAGGTGGCGAAGGGTCAACAGCAAGAGAGTCACTAAAGCACAAAGATGTAGAGAAAGTTATCATGTGTGACATTGACAGGATGGTTGTCGATTTTTGCCGAGAACATCTGACAGAAAATCAGGAGGCGTTTCGTGACGATAAGCTCCACATTGTTTTCAATGATGCAAAGGCTGAGCTAGAGAAAACTGAAGAAAAGTTTGATGTGATTGTGGGAGACCTACCAGATCCAATAGAGGGAGGGCCTTGCAATGACCTTTACACCAAACCCTTCTATGAGCAAGTCATAAAACCCCACCTCAAAGACAATGGCATCTTTGTCACTCAAGCTGGTCTGGCAGGAATTCTTTCCCATAAGGATATCTTCACTTCAATATACAACACTATAAAACATGTGTTCAAATATGTGATTGCATACACAGCTCATGTGCCATCTTATGCAGATTCATGTGGATGGGTTTTGGCTTCAGATGAACCACTCAAATTGGACGTTGAACAACTCAACAGCAGAATCCAGGAAAGAATTAGAGGAGATCTCCTCTATTTAGATGGTGCTTCCATTGTTTCATCCACTGTAGTAAACAAGATGATCTGCACATCGCTTCTGAAAGAAACTCAAGTCTTGACTGGAGAAAACGTAAGGTTCGTCTATGGGCATGGGCTTACAAAGAATGCAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spermine_synt_N Spermine_synth

Protein Analysis

362

Amino Acids

41.14

Weight (kDa)

5.09

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19530 AT5G19530
fragaria_vesca	FvH4_1g08290 FvH4_1g08290 FvH4_1g08290 FvH4_2g31200 FvH4_2g31200
malus_domestica	MD08G1070200.v1.1 MD15G1052000.v1.1
prunus_persica	Prupe.1G405900_v2.0.a1 Prupe.1G405900_v2.0.a1 Prupe.7G202400_v2.0.a1 Prupe.7G202400_v2.0.a1
pyrus_communis	pycom08g05810 pycom15g04970
rosa_chinensis	RchiOBHm_Chr2g0094361 RchiOBHm_Chr6g0311611
rosa_laevigata	RLG00000010387
rosa_multiflora	Rmu_sc0002888.1_g000005 Rmu_sc0015881.1_g000007
rosa_roxburghii	Rroxscaffold_2G00147190 Rroxscaffold_7G00157440
rosa_rugosa	Rorug02G0043600 Rorug06G0390100
rosa_samantha	Rh2AG091400 Rh2BG091400 Rh2DG090200 Rh6AG505300 Rh6BG516000 Rh6CG522000 Rh6DG507700
rosa_wichuraiana	Rw6G043980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AclWI	GGATC	3 cut(s)	35, 48, 623
AcsI	RAATTY	1 cut(s)	744
AcuI	CTGAAG	2 cut(s)	612, 852
AfiI	CCNNNNNNNGG	4 cut(s)	22, 112, 137, 638
AflIII	ACRYGT	1 cut(s)	793
AgsI	TTSAA	6 cut(s)	98, 214, 562, 774, 802, 896
AjnI	CCWGG	1 cut(s)	915
AjuI	GAANNNNNNNTTGG	2 cut(s)	240, 272
AluBI	AGCT	7 cut(s)	20, 181, 188, 547, 580, 731, 824
AluI	AGCT	7 cut(s)	20, 181, 188, 547, 580, 731, 824
Alw26I	GTCTC	1 cut(s)	612
AlwI	GGATC	3 cut(s)	35, 48, 623
AoxI	GGCC	1 cut(s)	644
ApeKI	GCWGC	3 cut(s)	151, 178, 230
ApoI	RAATTY	1 cut(s)	744
AseI	ATTAAT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	748
AspS9I	GGNCC	2 cut(s)	79, 644
AsuHPI	GGTGA	2 cut(s)	37, 304
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	163, 190, 242
BccI	CCATC	5 cut(s)	293, 478, 841, 849, 944
BciT130I	CCWGG	1 cut(s)	917
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	975
BglII	AGATCT	1 cut(s)	934
BisI	GCNGC	3 cut(s)	152, 179, 231
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	3 cut(s)	153, 180, 232
Bme1390I	CCNGG	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	79, 644
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	2 cut(s)	556, 723
BplI	GAGNNNNNCTC	4 cut(s)	921, 953, 924, 956
BpmI	CTGGAG	1 cut(s)	1050
Bpu10I	CCTNAGC	1 cut(s)	21
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	2 cut(s)	711, 1002
Bsa29I	ATCGAT	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	612
BsaXI	ACNNNNNCTCC	2 cut(s)	1023, 1053
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 112, 137, 638
Bse1I	ACTGG	2 cut(s)	142, 1033
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	658
Bse8I	GATNNNNATC	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	917
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	4 cut(s)	355, 489, 860, 968
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	4 cut(s)	22, 112, 137, 638
BseMI	GCAATG	1 cut(s)	658
BseMII	CTCAG	4 cut(s)	35, 81, 99, 567
BseNI	ACTGG	2 cut(s)	142, 1033
BseRI	GAGGAG	4 cut(s)	125, 188, 929, 945
BseXI	GCAGC	3 cut(s)	163, 190, 242
BsgI	GTGCAG	1 cut(s)	979
BshFI	GGCC	1 cut(s)	646
BshVI	ATCGAT	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	22, 112, 137, 638
BsmAI	GTCTC	1 cut(s)	612
BsmI	GAATGC	2 cut(s)	350, 1078
BsnI	GGCC	1 cut(s)	646
Bso31I	GGTCTC	1 cut(s)	612
Bsp143I	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
Bsp1720I	GCTNAGC	1 cut(s)	576
BspANI	GGCC	1 cut(s)	646
BspCNI	CTCAG	4 cut(s)	34, 82, 100, 568
BspDI	ATCGAT	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	3 cut(s)	35, 48, 623
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	1 cut(s)	658
BsrI	ACTGG	2 cut(s)	142, 1033
BssMI	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
Bst2UI	CCWGG	1 cut(s)	917
Bst4CI	ACNGT	1 cut(s)	976
Bst6I	CTCTTC	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	8, 228
BstDEI	CTNAG	5 cut(s)	21, 56, 90, 108, 576
BstF5I	GGATG	4 cut(s)	355, 489, 860, 968
BstKTI	GATC	7 cut(s)	43, 148, 193, 297, 631, 937, 993
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 821
BstNI	CCWGG	1 cut(s)	917
BstNSI	RCATGY	4 cut(s)	50, 161, 230, 797
BstSCI	CCNGG	1 cut(s)	915
BstSFI	CTRYAG	1 cut(s)	975
BstV1I	GCAGC	3 cut(s)	163, 190, 242
BstX2I	RGATCY	3 cut(s)	40, 628, 934
BstYI	RGATCY	3 cut(s)	40, 628, 934
Bsu15I	ATCGAT	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	646
BsuTUI	ATCGAT	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	984
BtsCI	GGATG	4 cut(s)	355, 489, 860, 968
BtsIMutI	CAGTG	1 cut(s)	972
Cac8I	GCNNGC	2 cut(s)	8, 228
Cfr13I	GGNCC	2 cut(s)	79, 644
ClaI	ATCGAT	1 cut(s)	297
CspCI	CAANNNNNGTGG	2 cut(s)	867, 902
DdeI	CTNAG	5 cut(s)	21, 56, 90, 108, 576
DpnI	GATC	7 cut(s)	42, 147, 192, 296, 630, 936, 992
DpnII	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	763
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	612, 852
Eco81I	CCTNAGG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRI	GAATTC	1 cut(s)	744
EcoRII	CCWGG	1 cut(s)	915
EcoRV	GATATC	1 cut(s)	763
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	152, 179, 231
FokI	GGATG	4 cut(s)	342, 496, 867, 955
Fsp4HI	GCNGC	3 cut(s)	152, 179, 231
FspBI	CTAG	1 cut(s)	581
GluI	GCNGC	3 cut(s)	152, 179, 231
GsuI	CTGGAG	1 cut(s)	1050
HaeIII	GGCC	1 cut(s)	646
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	3 cut(s)	431, 845, 912
HphI	GGTGA	2 cut(s)	37, 304
Hpy166II	GTNNAC	2 cut(s)	420, 982
Hpy188I	TCNGA	5 cut(s)	91, 126, 513, 871, 1008
Hpy188III	TCNNGA	3 cut(s)	524, 536, 1024
Hpy8I	GTNNAC	2 cut(s)	420, 982
HpyAV	CCTTC	2 cut(s)	407, 682
HpyCH4III	ACNGT	1 cut(s)	976
HpyCH4IV	ACGT	2 cut(s)	891, 1038
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 821
HpyF3I	CTNAG	5 cut(s)	21, 56, 90, 108, 576
HpySE526I	ACGT	2 cut(s)	891, 1038
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
LmnI	GCTCC	2 cut(s)	175, 552
Lsp1109I	GCAGC	3 cut(s)	163, 190, 242
LweI	GCATC	2 cut(s)	556, 723
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	2 cut(s)	891, 1038
MaeIII	GTNAC	4 cut(s)	432, 470, 536, 721
MalI	GATC	7 cut(s)	42, 147, 192, 296, 630, 936, 992
MboI	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
MboII	GAAGA	3 cut(s)	86, 605, 757
MflI	RGATCY	3 cut(s)	40, 628, 934
MluCI	AATT	5 cut(s)	98, 118, 744, 884, 924
MlyI	GAGTC	1 cut(s)	440
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	1 cut(s)	101
MslI	CAYNNNNRTG	2 cut(s)	447, 853
MspA1I	CMGCKG	1 cut(s)	181
MspR9I	CCNGG	1 cut(s)	917
Mva1269I	GAATGC	2 cut(s)	350, 1078
MvaI	CCWGG	1 cut(s)	917
MwoI	GCNNNNNNNGC	2 cut(s)	737, 821
NdeII	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
NlaIV	GGNNCC	1 cut(s)	42
NmeAIII	GCCGAG	1 cut(s)	527
NmuCI	GTSAC	4 cut(s)	432, 470, 536, 721
NspI	RCATGY	4 cut(s)	50, 161, 230, 797
PaeI	GCATGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	793
PcsI	WCGNNNNNNNCGW	1 cut(s)	1044
PctI	GAATGC	2 cut(s)	350, 1078
PdmI	GAANNNNTTC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	845, 912
PfoI	TCCNGGA	1 cut(s)	915
PkrI	GCNGC	3 cut(s)	153, 180, 232
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PscI	ACATGT	1 cut(s)	793
PshBI	ATTAAT	1 cut(s)	101
PsiI	TTATAA	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	915
PspGI	CCWGG	1 cut(s)	915
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	2 cut(s)	79, 644
PsuI	RGATCY	3 cut(s)	40, 628, 934
PvuII	CAGCTG	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	447, 853
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	3 cut(s)	152, 179, 231
Sau3AI	GATC	7 cut(s)	40, 145, 190, 294, 628, 934, 990
Sau96I	GGNCC	2 cut(s)	79, 644
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	917
SfaNI	GCATC	2 cut(s)	556, 723
SfcI	CTRYAG	1 cut(s)	975
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	447, 853
SmlI	CTYRAG	2 cut(s)	726, 1017
SmoI	CTYRAG	2 cut(s)	726, 1017
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	5 cut(s)	98, 118, 744, 884, 924
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	1 cut(s)	581
StyD4I	CCNGG	1 cut(s)	915
TaaI	ACNGT	1 cut(s)	976
TaiI	ACGT	2 cut(s)	894, 1041
TaqI	TCGA	2 cut(s)	297, 492
TasI	AATT	5 cut(s)	98, 118, 744, 884, 924
TfiI	GAWTC	2 cut(s)	845, 912
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	979
TseFI	GTSAC	4 cut(s)	432, 470, 536, 721
TseI	GCWGC	3 cut(s)	151, 178, 230
Tsp45I	GTSAC	4 cut(s)	432, 470, 536, 721
TspDTI	ATGAA	5 cut(s)	344, 357, 837, 888, 957
TspRI	CASTG	1 cut(s)	979
VpaK11BI	GGWCC	1 cut(s)	79
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	744
XceI	RCATGY	4 cut(s)	50, 161, 230, 797
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.