AT5G19630

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009940
Physical Location & Seq
Reverse (-)
6627940 .. 6630024
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G19630.1

Sequence Viewer

Length: 687 bp
ATGTCGTCAAACTTTATAGTGGAATCGTGTAGCGTTGATTCAGAAGAAGGGGTGAAGCTTCACACGAGAATCTTCAAACCCAGAAACGAAGGAGAAGAAGTCAGCGACGATGAGAATCTGGTGATAGTATTGGTCCACCCGTTCTCGCTCTTGGGTGGTTGTCAAGCTCTGCTCAAAGGCATAGCTTCTGAATTGGCCTCTAAGGGTTTCAAGTCTGTCACTTTCGATACGAGAGGTGCCGGAAAATCCACCGGAAGAGCTACTCTTACCGGCTTTGCTGAGGTCAAGGATGTGGTCGCTGTTTGTCGGTGGCTTTGTCAGAATGTTGATGCTCATAGGATCCTGCTCGTGGGTTCTTCTGCTGGTGCACCAATCGCAGGATCAGCGGTGGAGCAAGTAGAGCAAGTGGTGGGATATGTGAGTTTGGGATACCCATTTGGCCTAATGGCCTCGATTCTCTTTGGGCGACACCACAAGGCCATTCTCTCATCCCCTAAACCCAAACTCTTCGTAATGGGAACACAAGACGGGTTCACTAGCGTTAGCCAGCTAAAGAAGAAGCTGAAATCTGCAGTCGGACGCACTGAAACACACCTCATTGAAGGCGTTAGTCATTTCCAGATGGAAGGACCTGAATATGATTCTCAGGTGACCGATATTATATGTAAATTTATTTCATCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

228

Amino Acids

24.49

Weight (kDa)

6.65

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S15 PF02129 16 - 123 1.1e-09 X-Pro dipeptidyl-peptidase (S15 family)
Hydrolase_4 PF12146 59 - 171 2.3e-08 Serine aminopeptidase, S33
Abhydrolase_11 PF20408 59 - 205 6.7e-08 Alpha/beta hydrolase domain
Abhydrolase_1 PF00561 60 - 137 4.8e-08 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 1 cut(s) 386
AclWI GGATC 3 cut(s) 334, 347, 388
AcsI RAATTY 1 cut(s) 668
AfiI CCNNNNNNNGG 2 cut(s) 349, 377
AgsI TTSAA 3 cut(s) 76, 211, 602
AluBI AGCT 6 cut(s) 58, 167, 185, 260, 550, 562
AluI AGCT 6 cut(s) 58, 167, 185, 260, 550, 562
Alw21I GWGCWC 1 cut(s) 370
Alw44I GTGCAC 1 cut(s) 366
AlwI GGATC 3 cut(s) 334, 347, 388
AoxI GGCC 4 cut(s) 195, 439, 447, 477
ApaLI GTGCAC 1 cut(s) 366
ApoI RAATTY 1 cut(s) 668
AspS9I GGNCC 2 cut(s) 133, 629
AsuHPI GGTGA 3 cut(s) 64, 133, 661
AvaII GGWCC 2 cut(s) 133, 629
BaeGI GKGCMC 1 cut(s) 370
BamHI GGATCC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 236
BauI CACGAG 2 cut(s) 64, 347
Bbv12I GWGCWC 1 cut(s) 370
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 1 cut(s) 616
BciVI GTATCC 1 cut(s) 422
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 570
BfuI GTATCC 1 cut(s) 422
Bme18I GGWCC 2 cut(s) 133, 629
BmgT120I GGNCC 2 cut(s) 133, 629
BmiI GGNNCC 2 cut(s) 238, 341
BmsI GCATC 1 cut(s) 319
Bpu10I CCTNAGC 1 cut(s) 279
BsaBI GATNNNNATC 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 377
Bse118I RCCGGY 1 cut(s) 269
Bse8I GATNNNNATC 1 cut(s) 114
BseGI GGATG 3 cut(s) 295, 488, 677
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 349, 377
BseMII CTCAG 2 cut(s) 270, 659
BseSI GKGCMC 1 cut(s) 370
BshFI GGCC 4 cut(s) 197, 441, 449, 479
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 370
BsiSI CCGG 3 cut(s) 240, 252, 270
BslI CCNNNNNNNGG 2 cut(s) 349, 377
BsnI GGCC 4 cut(s) 197, 441, 449, 479
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 2 cut(s) 339, 380
BspACI CCGC 1 cut(s) 386
BspANI GGCC 4 cut(s) 197, 441, 449, 479
BspCNI CTCAG 2 cut(s) 271, 658
BspLI GGNNCC 2 cut(s) 238, 341
BspMAI CTGCAG 1 cut(s) 574
BspPI GGATC 3 cut(s) 334, 347, 388
BspQI GCTCTTC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssMI GATC 2 cut(s) 339, 380
BssSI CACGAG 2 cut(s) 64, 347
Bst2BI CACGAG 2 cut(s) 64, 347
Bst6I CTCTTC 2 cut(s) 250, 512
BstC8I GCNNGC 1 cut(s) 548
BstDEI CTNAG 3 cut(s) 201, 279, 645
BstEII GGTNACC 1 cut(s) 649
BstF5I GGATG 3 cut(s) 295, 488, 677
BstKTI GATC 2 cut(s) 342, 383
BstMBI GATC 2 cut(s) 339, 380
BstMWI GCNNNNNNNGC 3 cut(s) 374, 383, 400
BstPI GGTNACC 1 cut(s) 649
BstSFI CTRYAG 1 cut(s) 570
BstSLI GKGCMC 1 cut(s) 370
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 4 cut(s) 197, 441, 449, 479
BtsCI GGATG 3 cut(s) 295, 488, 677
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 548
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 133, 629
CseI GACGC 1 cut(s) 588
DdeI CTNAG 3 cut(s) 201, 279, 645
DpnI GATC 2 cut(s) 341, 382
DpnII GATC 2 cut(s) 339, 380
Eam1104I CTCTTC 2 cut(s) 250, 512
EarI CTCTTC 2 cut(s) 250, 512
Eco47I GGWCC 2 cut(s) 133, 629
Eco91I GGTNACC 1 cut(s) 649
EcoO109I RGGNCCY 1 cut(s) 629
EcoO65I GGTNACC 1 cut(s) 649
FaiI YATR 7 cut(s) 17, 182, 336, 417, 639, 662, 664
FokI GGATG 3 cut(s) 302, 475, 664
FspBI CTAG 1 cut(s) 537
HaeIII GGCC 4 cut(s) 197, 441, 449, 479
HapII CCGG 3 cut(s) 240, 252, 270
HgaI GACGC 1 cut(s) 588
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 6 cut(s) 23, 38, 69, 115, 454, 641
HpaII CCGG 3 cut(s) 240, 252, 270
HphI GGTGA 3 cut(s) 64, 133, 661
Hpy166II GTNNAC 3 cut(s) 136, 368, 534
Hpy188I TCNGA 4 cut(s) 43, 190, 321, 578
Hpy188III TCNNGA 1 cut(s) 619
Hpy8I GTNNAC 3 cut(s) 136, 368, 534
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 41, 83, 596, 620
HpyCH4V TGCA 2 cut(s) 368, 572
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 383, 400
HpyF3I CTNAG 3 cut(s) 201, 279, 645
Kzo9I GATC 2 cut(s) 339, 380
LguI GCTCTTC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 391
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 217, 649
MalI GATC 2 cut(s) 341, 382
MboI GATC 2 cut(s) 339, 380
MboII GAAGA 7 cut(s) 56, 64, 107, 267, 348, 499, 568
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 2 cut(s) 191, 668
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 5 cut(s) 208, 227, 274, 460, 605
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 3 cut(s) 240, 252, 270
MwoI GCNNNNNNNGC 3 cut(s) 374, 383, 400
NdeII GATC 2 cut(s) 339, 380
NlaIV GGNNCC 2 cut(s) 238, 341
NmuCI GTSAC 2 cut(s) 217, 649
PciSI GCTCTTC 1 cut(s) 250
PfeI GAWTC 6 cut(s) 23, 38, 69, 115, 454, 641
PpuMI RGGWCCY 1 cut(s) 629
Psp5II RGGWCCY 1 cut(s) 629
PspEI GGTNACC 1 cut(s) 649
PspN4I GGNNCC 2 cut(s) 238, 341
PspPI GGNCC 2 cut(s) 133, 629
PspPPI RGGWCCY 1 cut(s) 629
PstI CTGCAG 1 cut(s) 574
PsuI RGATCY 1 cut(s) 339
SapI GCTCTTC 1 cut(s) 250
Sau3AI GATC 2 cut(s) 339, 380
Sau96I GGNCC 2 cut(s) 133, 629
SduI GDGCHC 1 cut(s) 370
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 570
SinI GGWCC 2 cut(s) 133, 629
Sse9I AATT 2 cut(s) 191, 668
SsiI CCGC 1 cut(s) 386
SspMI CTAG 1 cut(s) 537
TaqI TCGA 2 cut(s) 225, 452
TaqII GACCGA 1 cut(s) 668
TasI AATT 2 cut(s) 191, 668
TfiI GAWTC 6 cut(s) 23, 38, 69, 115, 454, 641
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 217, 649
Tsp45I GTSAC 2 cut(s) 217, 649
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 1 cut(s) 589
VneI GTGCAC 1 cut(s) 366
VpaK11BI GGWCC 2 cut(s) 133, 629
XapI RAATTY 1 cut(s) 668
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.