MD11G1019500.v1.1

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009940
Physical Location & Seq
Forward (+)
1674911 .. 1676728
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1019500.v1.1.491

Sequence Viewer

Length: 750 bp
ATGCCAAACTGTACGGTGGAGTCGTGCACAGTTGAGACCAGCGATGGAGTCAAGCTCAGCACTCGGCTCTTCAAACCCAGAGAAGAAGAAGACATCAAGGAGGGCAGCCCTGTGGTGGTTCTGGTGCACCCATACTCCGTCCTTGGCGGCTGCCAAGGCCTGTTGAGAGGAATAGCAGCTGGGTTGGCAGACAGAGGTTATAAAGCTTTGACCTTTGACATGAGAGGGGTTGGGAGGTCAACGGGGAGGGCTTCTCTCACTGGGTTTGCAGAAATTAAGGATGTGATTTCTGTGTGCAAATGGGTTTGTGAGAATCTATCAGCTGCAGGATTTTGTTGGTGGGTTCTTCCGCAGGTTGATGATTTTGTGGATCTGTGGATTGTATTTCTCATATGGTGTGATGAACATGAAGTTGGGATTTCATTTGGTGCCCCAATTGCAGGCTCCGCAGTAGATCAGATAGAACAAGTCGTGGGCTATGTTAGTCTGGGGTATCCTTTCGGCATGCTTGCCTCAATCCTTTTCGGGAGACACCACAAAGCCGTACTACAATCCTCAAAACCCAAACTCTTCGTAATGGGGACTCAGGATGGGTACACGAGCGTGAAGCAGTTAAAGAACAAGCTAAGTTCTGCAGCCGGTCGTGTTGAAACGCACCTGATTGAAGGAGCAAGCCACTTCCAAATGGAAGGCCCTGCTTATGATGCACAGATGGTGAATCATATCCTTGAATTTATTGCTTCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

250

Amino Acids

27.09

Weight (kDa)

5.64

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S15 PF02129 15 - 105 8.9e-11 X-Pro dipeptidyl-peptidase (S15 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 428
AciI CCGC 3 cut(s) 147, 350, 447
AclWI GGATC 1 cut(s) 378
AcsI RAATTY 1 cut(s) 731
AfaI GTAC 3 cut(s) 13, 546, 596
AfiI CCNNNNNNNGG 2 cut(s) 115, 440
AgsI TTSAA 4 cut(s) 73, 650, 665, 731
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 5 cut(s) 55, 179, 206, 323, 625
AluI AGCT 5 cut(s) 55, 179, 206, 323, 625
Alw21I GWGCWC 2 cut(s) 29, 129
Alw26I GTCTC 2 cut(s) 29, 523
Alw44I GTGCAC 2 cut(s) 25, 125
AlwI GGATC 1 cut(s) 378
AoxI GGCC 2 cut(s) 157, 691
ApaLI GTGCAC 2 cut(s) 25, 125
ApeKI GCWGC 5 cut(s) 105, 150, 176, 323, 635
ApoI RAATTY 1 cut(s) 731
AspS9I GGNCC 1 cut(s) 692
AsuHPI GGTGA 1 cut(s) 727
BaeGI GKGCMC 3 cut(s) 29, 129, 433
BanI GGYRCC 1 cut(s) 428
BauI CACGAG 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 29, 129
BbvI GCAGC 5 cut(s) 117, 137, 188, 310, 647
BccI CCATC 3 cut(s) 38, 584, 706
BceAI ACGGC 1 cut(s) 527
BciVI GTATCC 1 cut(s) 504
BcoDI GTCTC 2 cut(s) 29, 523
BfmI CTRYAG 2 cut(s) 324, 633
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 504
BisI GCNGC 6 cut(s) 106, 148, 151, 177, 324, 636
BlpI GCTNAGC 1 cut(s) 56
BlsI GCNGC 6 cut(s) 107, 149, 152, 178, 325, 637
BmgT120I GGNCC 1 cut(s) 692
BmiI GGNNCC 2 cut(s) 430, 445
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 96
BplI GAGNNNNNCTC 4 cut(s) 39, 71, 238, 270
Bpu1102I GCTNAGC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 142, 154
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 440
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 142, 154
BseGI GGATG 2 cut(s) 286, 595
BseLI CCNNNNNNNGG 2 cut(s) 115, 440
BseMII CTCAG 2 cut(s) 70, 599
BseNI ACTGG 1 cut(s) 265
BseSI GKGCMC 3 cut(s) 29, 129, 433
BseXI GCAGC 5 cut(s) 117, 137, 188, 310, 647
BseYI CCCAGC 1 cut(s) 179
Bsh1285I CGRYCG 1 cut(s) 643
BshFI GGCC 2 cut(s) 159, 693
BshNI GGYRCC 1 cut(s) 428
BsiEI CGRYCG 1 cut(s) 643
BsiHKAI GWGCWC 2 cut(s) 29, 129
BsiSI CCGG 1 cut(s) 639
BslFI GGGAC 1 cut(s) 595
BslI CCNNNNNNNGG 2 cut(s) 115, 440
BsmAI GTCTC 2 cut(s) 29, 523
BsmFI GGGAC 1 cut(s) 595
BsnI GGCC 2 cut(s) 159, 693
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 3 cut(s) 29, 129, 433
Bsp143I GATC 2 cut(s) 370, 454
Bsp1720I GCTNAGC 1 cut(s) 56
BspACI CCGC 3 cut(s) 147, 350, 447
BspANI GGCC 2 cut(s) 159, 693
BspCNI CTCAG 2 cut(s) 69, 598
BspLI GGNNCC 2 cut(s) 430, 445
BspMAI CTGCAG 2 cut(s) 328, 637
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 378
BspQI GCTCTTC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 428
BspTNI GGTCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 638
BssECI CCNNGG 2 cut(s) 142, 154
BssMI GATC 2 cut(s) 370, 454
BssSI CACGAG 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 142, 154
Bst2BI CACGAG 1 cut(s) 598
Bst4CI ACNGT 3 cut(s) 11, 16, 31
Bst6I CTCTTC 2 cut(s) 74, 575
BstC8I GCNNGC 4 cut(s) 442, 506, 510, 673
BstDEI CTNAG 3 cut(s) 56, 585, 626
BstF5I GGATG 2 cut(s) 286, 595
BstKTI GATC 2 cut(s) 373, 457
BstMAI GTCTC 2 cut(s) 29, 523
BstMBI GATC 2 cut(s) 370, 454
BstMCI CGRYCG 1 cut(s) 643
BstMWI GCNNNNNNNGC 5 cut(s) 156, 185, 437, 446, 704
BstNSI RCATGY 1 cut(s) 508
BstSFI CTRYAG 2 cut(s) 324, 633
BstSLI GKGCMC 3 cut(s) 29, 129, 433
BstV1I GCAGC 5 cut(s) 117, 137, 188, 310, 647
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuI GTATCC 1 cut(s) 504
BsuRI GGCC 2 cut(s) 159, 693
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 286, 595
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 4 cut(s) 442, 506, 510, 673
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 1 cut(s) 692
Csp6I GTAC 3 cut(s) 12, 545, 595
CviAII CATG 3 cut(s) 220, 407, 505
CviQI GTAC 3 cut(s) 12, 545, 595
DdeI CTNAG 3 cut(s) 56, 585, 626
DpnI GATC 2 cut(s) 372, 456
DpnII GATC 2 cut(s) 370, 454
Eam1104I CTCTTC 2 cut(s) 74, 575
EarI CTCTTC 2 cut(s) 74, 575
Eco130I CCWWGG 2 cut(s) 142, 154
Eco147I AGGCCT 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 29
EcoO109I RGGNCCY 1 cut(s) 692
EcoT14I CCWWGG 2 cut(s) 142, 154
ErhI CCWWGG 2 cut(s) 142, 154
FaeI CATG 3 cut(s) 223, 410, 508
FaqI GGGAC 1 cut(s) 595
FatI CATG 3 cut(s) 219, 406, 504
FauNDI CATATG 1 cut(s) 392
Fnu4HI GCNGC 6 cut(s) 106, 148, 151, 177, 324, 636
FokI GGATG 2 cut(s) 293, 602
Fsp4HI GCNGC 6 cut(s) 106, 148, 151, 177, 324, 636
GluI GCNGC 6 cut(s) 106, 148, 151, 177, 324, 636
GsaI CCCAGC 1 cut(s) 183
HaeIII GGCC 2 cut(s) 159, 693
HapII CCGG 1 cut(s) 639
Hin1II CATG 3 cut(s) 223, 410, 508
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 5 cut(s) 20, 48, 313, 583, 718
HpaII CCGG 1 cut(s) 639
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 4 cut(s) 27, 127, 240, 597
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 2 cut(s) 526, 587
Hpy8I GTNNAC 4 cut(s) 27, 127, 240, 597
HpyAV CCTTC 2 cut(s) 659, 683
HpyCH4III ACNGT 3 cut(s) 11, 16, 31
HpyCH4V TGCA 8 cut(s) 27, 127, 269, 297, 326, 440, 635, 707
HpyF10VI GCNNNNNNNGC 5 cut(s) 156, 185, 437, 446, 704
HpyF3I CTNAG 3 cut(s) 56, 585, 626
Hsp92II CATG 3 cut(s) 223, 410, 508
Kzo9I GATC 2 cut(s) 370, 454
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 2 cut(s) 449, 668
Lsp1109I GCAGC 5 cut(s) 117, 137, 188, 310, 647
LweI GCATC 1 cut(s) 694
MalI GATC 2 cut(s) 372, 456
MboI GATC 2 cut(s) 370, 454
MboII GAAGA 6 cut(s) 61, 95, 98, 101, 338, 562
MfeI CAATTG 1 cut(s) 435
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 3 cut(s) 29, 129, 433
MluCI AATT 3 cut(s) 273, 435, 731
MlyI GAGTC 3 cut(s) 29, 57, 577
MnlI CCTC 8 cut(s) 94, 161, 188, 218, 228, 240, 523, 565
MseI TTAA 2 cut(s) 276, 614
MslI CAYNNNNRTG 1 cut(s) 602
MspA1I CMGCKG 2 cut(s) 179, 323
MspI CCGG 1 cut(s) 639
MunI CAATTG 1 cut(s) 435
MwoI GCNNNNNNNGC 5 cut(s) 156, 185, 437, 446, 704
NdeI CATATG 1 cut(s) 392
NdeII GATC 2 cut(s) 370, 454
NlaIII CATG 3 cut(s) 223, 410, 508
NlaIV GGNNCC 2 cut(s) 430, 445
NmeAIII GCCGAG 1 cut(s) 43
NspI RCATGY 1 cut(s) 508
OliI CACNNNNGTG 1 cut(s) 602
PaeI GCATGC 1 cut(s) 508
PceI AGGCCT 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 2 cut(s) 313, 718
PkrI GCNGC 6 cut(s) 107, 149, 152, 178, 325, 637
PleI GAGTC 3 cut(s) 28, 56, 577
PpsI GAGTC 3 cut(s) 28, 56, 577
PsiI TTATAA 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 430, 445
PspPI GGNCC 1 cut(s) 692
PstI CTGCAG 2 cut(s) 328, 637
PsuI RGATCY 1 cut(s) 370
PvuII CAGCTG 2 cut(s) 179, 323
RsaI GTAC 3 cut(s) 13, 546, 596
RsaNI GTAC 3 cut(s) 12, 545, 595
RseI CAYNNNNRTG 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 276, 614
SatI GCNGC 6 cut(s) 106, 148, 151, 177, 324, 636
Sau3AI GATC 2 cut(s) 370, 454
Sau96I GGNCC 1 cut(s) 692
SchI GAGTC 3 cut(s) 29, 57, 577
SduI GDGCHC 3 cut(s) 29, 129, 433
SfaNI GCATC 1 cut(s) 694
SfcI CTRYAG 2 cut(s) 324, 633
SmiMI CAYNNNNRTG 1 cut(s) 602
SphI GCATGC 1 cut(s) 508
Sse9I AATT 3 cut(s) 273, 435, 731
SseBI AGGCCT 1 cut(s) 159
SsiI CCGC 3 cut(s) 147, 350, 447
StuI AGGCCT 1 cut(s) 159
StyI CCWWGG 2 cut(s) 142, 154
TaaI ACNGT 3 cut(s) 11, 16, 31
TasI AATT 3 cut(s) 273, 435, 731
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 313, 718
Tru1I TTAA 2 cut(s) 276, 614
Tru9I TTAA 2 cut(s) 276, 614
TscAI CASTG 1 cut(s) 265
TseI GCWGC 5 cut(s) 105, 150, 176, 323, 635
TspDTI ATGAA 4 cut(s) 411, 417, 423, 732
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 265
VneI GTGCAC 2 cut(s) 25, 125
XapI RAATTY 1 cut(s) 731
XceI RCATGY 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.