RLG00000036851

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009940
Physical Location & Seq
Reverse (-)
85807514 .. 85809886
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036851

Sequence Viewer

Length: 690 bp
ATGTCAAACTGTACGGTCGAGACCTGCACAGTTGAGACCAGTGATGGAGCCAAGCTCAACACAAGGCTTTTCAGACCCAGAGAAGCCCAACAACAACAACAAATGAAGGAGGGCAATGATCTTGTGGTGGTTCTGGTGCATCCCTACTCTGTCCTTGGTGGCTGTCAAGGCCTTTTGAGAGGCTTAGCATCTGGGTTAGCTGAGAAAGGCTTCAAAGCTGTCACTTTTGACATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTGCAGAAATCAAGGATGTGATTGCTGTGTGCAAATGGGTCTTTGAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGGTGCCCCGATTGCAGGCTCAGCGGTTGATCAGATTGAACAAGTTGTAGGATATGTGAGTCTGGGGTATCCTTTTGGAATGACTGCCTCGATCCTTTTTGGGAGACACCACAAAGCCATCCTACAATCCCCGAAACCAAAACTTTTTGTAATGGGGACTCGAGATGGGTTTACAAGTGTGAAGCAACTGAAGAACAAGCTAAGTTCTGCAGCAGGGCGTGTTGAAACACACCTTATTGAAGGAGTTAGCCACTTCCAAATGGAAGGCGCAGCTTATGATACACAGATGGTGAATCTTATCCTTGCATTTATTGTGTCGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

230

Amino Acids

24.55

Weight (kDa)

9.08

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S15 PF02129 15 - 124 1.7e-08 X-Pro dipeptidyl-peptidase (S15 family)
Hydrolase_4 PF12146 57 - 144 2.5e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 58 - 134 2.1e-07 alpha/beta hydrolase fold
Abhydrolase_11 PF20408 60 - 206 1e-09 Alpha/beta hydrolase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 2 cut(s) 32, 356
AccB1I GGYRCC 1 cut(s) 368
AciI CCGC 1 cut(s) 389
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 2 cut(s) 325, 342
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 4 cut(s) 214, 404, 590, 605
AluBI AGCT 5 cut(s) 55, 200, 218, 565, 638
AluI AGCT 5 cut(s) 55, 200, 218, 565, 638
Alw26I GTCTC 3 cut(s) 14, 29, 463
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 525
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 575, 635
ApoI RAATTY 2 cut(s) 325, 342
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 368
BbvI GCAGC 2 cut(s) 587, 647
BccI CCATC 4 cut(s) 38, 491, 524, 646
BciVI GTATCC 1 cut(s) 444
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 3 cut(s) 14, 29, 463
BfmI CTRYAG 2 cut(s) 363, 573
BfuAI ACCTGC 2 cut(s) 32, 356
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 2 cut(s) 576, 636
BlpI GCTNAGC 2 cut(s) 184, 385
BlsI GCNGC 2 cut(s) 577, 637
BmeT110I CYCGRG 1 cut(s) 525
BmiI GGNNCC 2 cut(s) 49, 370
BmrI ACTGGG 2 cut(s) 264, 282
BmsI GCATC 2 cut(s) 148, 197
BmuI ACTGGG 2 cut(s) 264, 282
BplI GAGNNNNNCTC 2 cut(s) 39, 71
Bpu1102I GCTNAGC 2 cut(s) 184, 385
BsaI GGTCTC 2 cut(s) 14, 29
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 39, 259, 277
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 3 cut(s) 139, 298, 483
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 192, 399
BseNI ACTGG 3 cut(s) 39, 259, 277
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 2 cut(s) 587, 647
BsgI GTGCAG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 525
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 3 cut(s) 14, 29, 463
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 2 cut(s) 14, 29
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 3 cut(s) 118, 394, 456
Bsp1720I GCTNAGC 2 cut(s) 184, 385
BspACI CCGC 1 cut(s) 389
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 193, 398
BspLI GGNNCC 2 cut(s) 49, 370
BspMAI CTGCAG 2 cut(s) 367, 577
BspMI ACCTGC 2 cut(s) 32, 356
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 2 cut(s) 14, 29
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 3 cut(s) 39, 259, 277
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 118, 394, 456
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 11, 16, 31
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 4 cut(s) 184, 201, 385, 566
BstF5I GGATG 3 cut(s) 139, 298, 483
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 3 cut(s) 121, 397, 459
BstMAI GTCTC 3 cut(s) 14, 29, 463
BstMBI GATC 3 cut(s) 118, 394, 456
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 168, 377, 386
BstSFI CTRYAG 2 cut(s) 363, 573
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 587, 647
BsuI GTATCC 1 cut(s) 444
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 3 cut(s) 139, 298, 483
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 2 cut(s) 32, 356
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 232
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 4 cut(s) 184, 201, 385, 566
DpnI GATC 3 cut(s) 120, 396, 458
DpnII GATC 3 cut(s) 118, 394, 456
Eco130I CCWWGG 1 cut(s) 154
Eco147I AGGCCT 1 cut(s) 171
Eco31I GGTCTC 2 cut(s) 14, 29
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 233, 420, 642
FaqI GGGAC 1 cut(s) 535
FatI CATG 1 cut(s) 231
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 2 cut(s) 576, 636
FokI GGATG 3 cut(s) 126, 305, 470
Fsp4HI GCNGC 2 cut(s) 576, 636
GlaI GCGC 1 cut(s) 634
GluI GCNGC 2 cut(s) 576, 636
HaeIII GGCC 1 cut(s) 171
HhaI GCGC 1 cut(s) 635
Hin1II CATG 1 cut(s) 235
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 3 cut(s) 424, 523, 658
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 2 cut(s) 252, 537
Hpy188I TCNGA 2 cut(s) 74, 399
Hpy188III TCNNGA 2 cut(s) 19, 527
Hpy8I GTNNAC 2 cut(s) 252, 537
HpyAV CCTTC 4 cut(s) 100, 253, 599, 623
HpyCH4III ACNGT 3 cut(s) 11, 16, 31
HpyCH4V TGCA 8 cut(s) 27, 139, 281, 309, 365, 380, 575, 671
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 377, 386
HpyF3I CTNAG 4 cut(s) 184, 201, 385, 566
Hsp92II CATG 1 cut(s) 235
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 3 cut(s) 118, 394, 456
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 587, 647
LweI GCATC 2 cut(s) 148, 197
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 120, 396, 458
MboI GATC 3 cut(s) 118, 394, 456
MboII GAAGA 2 cut(s) 351, 568
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 325, 342
MlyI GAGTC 2 cut(s) 433, 517
MnlI CCTC 5 cut(s) 103, 173, 230, 240, 463
MroXI GAANNNNTTC 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 389
MwoI GCNNNNNNNGC 3 cut(s) 168, 377, 386
NdeII GATC 3 cut(s) 118, 394, 456
NlaIII CATG 1 cut(s) 235
NlaIV GGNNCC 2 cut(s) 49, 370
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 356
PceI AGGCCT 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 2 cut(s) 577, 637
PleI GAGTC 2 cut(s) 432, 517
PpsI GAGTC 2 cut(s) 432, 517
PspN4I GGNNCC 2 cut(s) 49, 370
PstI CTGCAG 2 cut(s) 367, 577
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SatI GCNGC 2 cut(s) 576, 636
Sau3AI GATC 3 cut(s) 118, 394, 456
SchI GAGTC 2 cut(s) 433, 517
SduI GDGCHC 1 cut(s) 373
SetI ASST 9 cut(s) 26, 57, 202, 220, 251, 370, 567, 600, 640
SfaNI GCATC 2 cut(s) 148, 197
SfcI CTRYAG 2 cut(s) 363, 573
Sfr274I CTCGAG 1 cut(s) 525
SlaI CTCGAG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 2 cut(s) 325, 342
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 1 cut(s) 389
StuI AGGCCT 1 cut(s) 171
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 3 cut(s) 11, 16, 31
TaqI TCGA 3 cut(s) 18, 455, 526
TasI AATT 2 cut(s) 325, 342
TfiI GAWTC 1 cut(s) 658
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 575, 635
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 46
XapI RAATTY 2 cut(s) 325, 342
XhoI CTCGAG 1 cut(s) 525
XmnI GAANNNNTTC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.