Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009940

Physical Location & Seq

Genomic Coordinates Reverse (-)

1313874 .. 1316677

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G018000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCAAACTGTACGGTCGAGACCTGCACAGTTGAGACCAGTGATGGAGTCAAACTCAGCACAAGGCTCTTCAAACCAAGAGAAGAGATCAACAAGGGAAATCCTGTAGTGGTTCTGGTGCACCCATACTCAGTCTTGGGTGGTTGCCAAGGCCTATTGAGAGGTATAGCAGCTGGGTTGGCAGATAGAGGCTACAAAGCTGTGACCTTTGACATGAGAGGGGTTGGGAGGTCAACAGGGAGGGCTTCTCTTACTGGGTTTGCAGAAATCAAGGATGTGATTGCTGTGTGCAAATGGGTCTGTGAGAATCTCTCTGCTGACAGAATTTTGTTGGTGGGTTCTTCTGCAGGTGCCCCAATTGCAGGCTCTGCAGTAGATCAGATTGAACAAGTTGTGGGTTATGTTAGTCTGGGGTATCCTTTCGGCATGATTGCCTCAATACTTTTTGGGAGACACCACAAAGCCGTACTACAATCTCCAAAACCAAAAATTTTCATAATGGGGACTAAGGATGGTTTCACAAGTGTTCAGCAGCTCAAGAACAAGCTACGTTCAGCAGCCGGGCGCGTCGAAACACACCTGATTGAAGGAGTAAGCCACTTCCAAATGGAAGGCCCTGCTTATGACGCACAGATGGAGCTTAGTTGGTTTGCATACTCTGTGCCATCACAGTGTAAAATTAAGCTGCTGTCTCAGTTAATTTGGCATTTAGCCACACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

241

Amino Acids

25.92

Weight (kDa)

9.03

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19630
fragaria_vesca	FvH4_3g44090
malus_domestica	MD03G1018500.v1.1 MD11G1019500.v1.1
prunus_persica	Prupe.6G018000_v2.0.a1 Prupe.6G018000_v2.0.a1
pyrus_communis	pycom11g01440
rosa_chinensis	RchiOBHm_Chr5g0080391 RchiOBHm_Chr5g0080421
rosa_laevigata	RLG00000036851 RLG00000036853
rosa_multiflora	Rmu_sc0000826.1_g000012 Rmu_sc0006792.1_g000023 Rmu_sc0043003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003010
rosa_rugosa	Rorug05G0468300
rosa_samantha	Rh5AG522600 Rh5BG544100 Rh5CG567700 Rh5DG554400
rosa_wichuraiana	Rw0G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	338
Acc36I	ACCTGC	2 cut(s)	32, 338
AccB1I	GGYRCC	1 cut(s)	350
AccII	CGCG	1 cut(s)	567
AcsI	RAATTY	2 cut(s)	324, 489
AfaI	GTAC	2 cut(s)	13, 468
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	73, 386, 587
AluBI	AGCT	6 cut(s)	173, 200, 535, 547, 640, 685
AluI	AGCT	6 cut(s)	173, 200, 535, 547, 640, 685
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	4 cut(s)	14, 29, 445, 696
Alw44I	GTGCAC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	151, 613
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	4 cut(s)	170, 532, 557, 685
ApoI	RAATTY	2 cut(s)	324, 489
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	614
AsuC2I	CCSGG	1 cut(s)	562
BaeGI	GKGCMC	2 cut(s)	123, 355
BanI	GGYRCC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	4 cut(s)	182, 544, 569, 672
BccI	CCATC	4 cut(s)	38, 506, 628, 673
BceAI	ACGGC	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	426
BcnI	CCSGG	1 cut(s)	562
BcoDI	GTCTC	4 cut(s)	14, 29, 445, 696
BfmI	CTRYAG	3 cut(s)	105, 345, 369
BfuAI	ACCTGC	2 cut(s)	32, 338
BfuI	GTATCC	1 cut(s)	426
BisI	GCNGC	4 cut(s)	171, 533, 558, 686
BlsI	GCNGC	4 cut(s)	172, 534, 559, 687
Bme1390I	CCNGG	1 cut(s)	562
BmgT120I	GGNCC	1 cut(s)	614
BmiI	GGNNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	562
BmrI	ACTGGG	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	264
BplI	GAGNNNNNCTC	6 cut(s)	39, 71, 232, 264, 296, 328
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	562
BsaI	GGTCTC	2 cut(s)	14, 29
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	39, 259
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	280, 517
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	3 cut(s)	70, 144, 707
BseNI	ACTGG	2 cut(s)	39, 259
BseSI	GKGCMC	2 cut(s)	123, 355
BseXI	GCAGC	4 cut(s)	182, 544, 569, 672
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	567
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	153, 615
BshNI	GGYRCC	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	561
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	4 cut(s)	14, 29, 445, 696
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	153, 615
Bso31I	GGTCTC	2 cut(s)	14, 29
Bsp1286I	GDGCHC	2 cut(s)	123, 355
Bsp143I	GATC	2 cut(s)	87, 376
BspANI	GGCC	2 cut(s)	153, 615
BspCNI	CTCAG	3 cut(s)	69, 143, 706
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	352
BspMAI	CTGCAG	2 cut(s)	349, 373
BspMI	ACCTGC	2 cut(s)	32, 338
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	350
BspTNI	GGTCTC	2 cut(s)	14, 29
BsrI	ACTGG	2 cut(s)	39, 259
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	87, 376
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	4 cut(s)	11, 16, 31, 672
Bst6I	CTCTTC	2 cut(s)	74, 78
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	5 cut(s)	56, 130, 507, 641, 693
BstF5I	GGATG	2 cut(s)	280, 517
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	90, 379
BstMAI	GTCTC	4 cut(s)	14, 29, 445, 696
BstMBI	GATC	2 cut(s)	87, 376
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 359, 368, 626
BstSCI	CCNGG	1 cut(s)	560
BstSFI	CTRYAG	3 cut(s)	105, 345, 369
BstSLI	GKGCMC	2 cut(s)	123, 355
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	4 cut(s)	182, 544, 569, 672
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	153, 615
BtsCI	GGATG	2 cut(s)	280, 517
BtsIMutI	CAGTG	2 cut(s)	46, 677
BveI	ACCTGC	2 cut(s)	32, 338
Cac8I	GCNNGC	1 cut(s)	364
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	614
CseI	GACGC	2 cut(s)	556, 635
Csp6I	GTAC	2 cut(s)	12, 467
CviAII	CATG	2 cut(s)	214, 427
CviQI	GTAC	2 cut(s)	12, 467
DdeI	CTNAG	5 cut(s)	56, 130, 507, 641, 693
DpnI	GATC	2 cut(s)	89, 378
DpnII	GATC	2 cut(s)	87, 376
Eam1104I	CTCTTC	2 cut(s)	74, 78
EarI	CTCTTC	2 cut(s)	74, 78
Eco130I	CCWWGG	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	153
Eco31I	GGTCTC	2 cut(s)	14, 29
EcoO109I	RGGNCCY	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	217, 430
FaiI	YATR	8 cut(s)	127, 167, 215, 402, 428, 497, 624, 655
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	2 cut(s)	213, 426
Fnu4HI	GCNGC	4 cut(s)	171, 533, 558, 686
FokI	GGATG	2 cut(s)	287, 524
Fsp4HI	GCNGC	4 cut(s)	171, 533, 558, 686
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	171, 533, 558, 686
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	153, 615
HapII	CCGG	1 cut(s)	561
HgaI	GACGC	2 cut(s)	556, 635
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	217, 430
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	48, 307
HpaII	CCGG	1 cut(s)	561
Hpy166II	GTNNAC	2 cut(s)	121, 234
Hpy188I	TCNGA	1 cut(s)	381
Hpy188III	TCNNGA	2 cut(s)	19, 538
Hpy8I	GTNNAC	2 cut(s)	121, 234
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	2 cut(s)	581, 605
HpyCH4III	ACNGT	4 cut(s)	11, 16, 31, 672
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	8 cut(s)	27, 121, 263, 291, 347, 362, 371, 653
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 359, 368, 626
HpyF3I	CTNAG	5 cut(s)	56, 130, 507, 641, 693
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	2 cut(s)	217, 430
HspAI	GCGC	1 cut(s)	565
Kzo9I	GATC	2 cut(s)	87, 376
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	4 cut(s)	182, 544, 569, 672
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	89, 378
MboI	GATC	2 cut(s)	87, 376
MboII	GAAGA	3 cut(s)	61, 95, 333
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	123, 355
MluCI	AATT	5 cut(s)	324, 357, 489, 678, 699
MlyI	GAGTC	1 cut(s)	57
MnlI	CCTC	6 cut(s)	155, 182, 212, 222, 234, 445
MseI	TTAA	2 cut(s)	681, 698
MslI	CAYNNNNRTG	1 cut(s)	670
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	561
MspR9I	CCNGG	1 cut(s)	562
MunI	CAATTG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	4 cut(s)	179, 359, 368, 626
NciI	CCSGG	1 cut(s)	562
NdeII	GATC	2 cut(s)	87, 376
NlaIII	CATG	2 cut(s)	217, 430
NlaIV	GGNNCC	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	202
PaqCI	CACCTGC	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	4 cut(s)	172, 534, 559, 687
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	614
PstI	CTGCAG	2 cut(s)	349, 373
PstNI	CAGNNNCTG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	13, 468
RsaNI	GTAC	2 cut(s)	12, 467
RseI	CAYNNNNRTG	1 cut(s)	670
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	681, 698
SatI	GCNGC	4 cut(s)	171, 533, 558, 686
Sau3AI	GATC	2 cut(s)	87, 376
Sau96I	GGNCC	1 cut(s)	614
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	562
SduI	GDGCHC	2 cut(s)	123, 355
SfcI	CTRYAG	3 cut(s)	105, 345, 369
SmiMI	CAYNNNNRTG	1 cut(s)	670
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	5 cut(s)	324, 357, 489, 678, 699
SseBI	AGGCCT	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	560
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	11, 16, 31, 672
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	18, 570
TasI	AATT	5 cut(s)	324, 357, 489, 678, 699
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	2 cut(s)	681, 698
Tru9I	TTAA	2 cut(s)	681, 698
TscAI	CASTG	2 cut(s)	46, 677
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	170, 532, 557, 685
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	484
TspRI	CASTG	2 cut(s)	46, 677
VneI	GTGCAC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	324, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.