Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009940

Physical Location & Seq

Genomic Coordinates Reverse (-)

89648146 .. 89731025

Gene Structure 82880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG522600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGGAGGGCAATGATCTTGTGGTGGTTCTGGTGCATCCCTACTCTGTCCTGGGTGGCTGTCAGGGCCTTTTGAGAGGCATAGCAGCTGGGTTAGCTGAGAAAGGCTTCAAAGCTGTCACTTTTGACATGAAAGGAGTGGGGAGGTCAACTGGGAAGGCTTCTCTTACTCGGTTTGCAGAAATCAAGGATGTGATTGCTGTCTGCAAATGGGTCTATGAGAATTTTTCTGCTGATAGAATTTTGCTTGTGGGTTCTTCTGCAGGTGCCCCAATTGCAGGCTCAGCGGTTGATCAGATTGAACAAGTTGTAGGATATGTGAGTCTGGGGTATCCTTTTGGCATGACTGCCTCGATCCTTTTTGGGAGACACCACAAAGCCATCCTACAATCCCCGAAACCAAAACTTTTTGTAATGGGGACTCGAGATGGGTTTACAAGTGTGAAGCAACTGAAGAACAAGCTAAGTTCTGCGGCAGGGCGTGTTGAAACACACCTTATTGAAGGAGTTAGCCACTTCCAAATGGAAGGGGCAGCTTATGATACACAGATGGTGAATCTTATCCTTGAATTTATTGTATCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

195

Amino Acids

20.86

Weight (kDa)

9.08

Isoelectric Point (pI)

25.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	23 - 110	7.9e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	25 - 100	8.3e-07	alpha/beta hydrolase fold
Abhydrolase_11	PF20408	26 - 172	2e-10	Alpha/beta hydrolase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19630
fragaria_vesca	FvH4_3g44090
malus_domestica	MD03G1018500.v1.1 MD11G1019500.v1.1
prunus_persica	Prupe.6G018000_v2.0.a1 Prupe.6G018000_v2.0.a1
pyrus_communis	pycom11g01440
rosa_chinensis	RchiOBHm_Chr5g0080391 RchiOBHm_Chr5g0080421
rosa_laevigata	RLG00000036851 RLG00000036853
rosa_multiflora	Rmu_sc0000826.1_g000012 Rmu_sc0006792.1_g000023 Rmu_sc0043003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003010
rosa_rugosa	Rorug05G0468300
rosa_samantha	Rh5AG522600 Rh5BG544100 Rh5CG567700 Rh5DG554400
rosa_wichuraiana	Rw0G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	266
AciI	CCGC	2 cut(s)	287, 473
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	3 cut(s)	223, 240, 569
AcuI	CTGAAG	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	5 cut(s)	112, 302, 488, 503, 569
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	5 cut(s)	89, 98, 116, 463, 536
AluI	AGCT	5 cut(s)	89, 98, 116, 463, 536
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	349
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	2 cut(s)	86, 533
ApoI	RAATTY	3 cut(s)	223, 240, 569
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	98, 545
BccI	CCATC	3 cut(s)	389, 422, 544
BciT130I	CCWGG	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	361
BfmI	CTRYAG	1 cut(s)	261
BfuAI	ACCTGC	1 cut(s)	254
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	3 cut(s)	87, 474, 534
BlpI	GCTNAGC	1 cut(s)	283
BlsI	GCNGC	3 cut(s)	88, 475, 535
Bme1390I	CCNGG	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	162
Bpu1102I	GCTNAGC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	157
Bse3DI	GCAATG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	37, 196, 381
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseMI	GCAATG	1 cut(s)	19
BseMII	CTCAG	2 cut(s)	90, 297
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	98, 545
BseYI	CCCAGC	1 cut(s)	89
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	423
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	423
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	16, 292, 354
Bsp1720I	GCTNAGC	1 cut(s)	283
BspACI	CCGC	2 cut(s)	287, 473
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	91, 296
BspLI	GGNNCC	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	265
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	3 cut(s)	16, 292, 354
Bst2UI	CCWGG	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	99, 283, 464
BstF5I	GGATG	3 cut(s)	37, 196, 381
BstKTI	GATC	3 cut(s)	19, 295, 357
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	16, 292, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 95, 275, 284
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	98, 545
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	37, 196, 381
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	67
CviAII	CATG	2 cut(s)	130, 343
DdeI	CTNAG	3 cut(s)	99, 283, 464
DpnI	GATC	3 cut(s)	18, 294, 356
DpnII	GATC	3 cut(s)	16, 292, 354
Eco57I	CTGAAG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	133, 346
FaiI	YATR	6 cut(s)	83, 131, 219, 318, 344, 540
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	129, 342
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	3 cut(s)	87, 474, 534
FokI	GGATG	3 cut(s)	24, 203, 368
Fsp4HI	GCNGC	3 cut(s)	87, 474, 534
GluI	GCNGC	3 cut(s)	87, 474, 534
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	133, 346
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	3 cut(s)	322, 421, 556
HphI	GGTGA	1 cut(s)	565
Hpy166II	GTNNAC	2 cut(s)	150, 435
Hpy188I	TCNGA	1 cut(s)	297
Hpy188III	TCNNGA	1 cut(s)	425
Hpy8I	GTNNAC	2 cut(s)	150, 435
HpyAV	CCTTC	3 cut(s)	151, 497, 521
HpyCH4V	TGCA	5 cut(s)	37, 179, 207, 263, 278
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 95, 275, 284
HpyF3I	CTNAG	3 cut(s)	99, 283, 464
Hsp92II	CATG	2 cut(s)	133, 346
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	16, 292, 354
Lsp1109I	GCAGC	2 cut(s)	98, 545
LweI	GCATC	1 cut(s)	46
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	18, 294, 356
MboI	GATC	3 cut(s)	16, 292, 354
MboII	GAAGA	2 cut(s)	249, 466
MfeI	CAATTG	1 cut(s)	273
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	4 cut(s)	223, 240, 273, 569
MlyI	GAGTC	2 cut(s)	331, 415
MnlI	CCTC	3 cut(s)	71, 138, 361
MroXI	GAANNNNTTC	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	89, 287
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	4 cut(s)	66, 95, 275, 284
NdeII	GATC	3 cut(s)	16, 292, 354
NlaIII	CATG	2 cut(s)	133, 346
NlaIV	GGNNCC	1 cut(s)	268
NmuCI	GTSAC	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	3 cut(s)	88, 475, 535
PleI	GAGTC	2 cut(s)	330, 415
PpsI	GAGTC	2 cut(s)	330, 415
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	89
SatI	GCNGC	3 cut(s)	87, 474, 534
Sau3AI	GATC	3 cut(s)	16, 292, 354
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	331, 415
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	8 cut(s)	91, 100, 118, 149, 268, 465, 498, 538
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	261
Sfr274I	CTCGAG	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	223, 240, 273, 569
SsiI	CCGC	2 cut(s)	287, 473
StyD4I	CCNGG	1 cut(s)	51
TaqI	TCGA	2 cut(s)	353, 424
TasI	AATT	4 cut(s)	223, 240, 273, 569
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	86, 533
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	17, 146
XapI	RAATTY	3 cut(s)	223, 240, 569
XhoI	CTCGAG	1 cut(s)	423
XmnI	GAANNNNTTC	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.