Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000826.1

Orthogroup ID

OG0009940

Physical Location & Seq

Genomic Coordinates Forward (+)

28244 .. 30621

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000826.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgtcaaactgtactgtcgagacctgcacagttgagaccagtgatggagccaagctcaacacaaggctcttcagacccagagaagcccaacaacaacatcaaatgaaggagggcaatgatcttgtggtggttctggttcatccctactctgtcctgggtggctgtcagggccttttgagaggcatagcagctgggttagctgagaaaggcttcaaagctgtcacttttgacatgagaggagttgggaggtcaactgggaaggcttctcttactgggtttgcagaaatcaaggatgtgattgctgtctgtaaatgggtctctgagaatttgtctgctgatagaattttgcttgtgggttcttctgcaggtgccccgattgcaggctcagcggttgatcagattgaacaagttgtaggatatgtgagtctggggtatccttttggcatgactgcctcgatcctttttgggagacaccacaaagccatcctacaatccccgaaaccaaaactttttgtaatggggactcgagatgggtttacaagtgtgaagcaactgaagaacaagctaagttctgcagcagggcgtgttgaaacacaccttattgaaggagttagccacttccaaatggaaggcgcagcttatgatacacagatggtgaatcttatccttgaatttattgtgtcgttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

229

Amino Acids

24.54

Weight (kDa)

8.67

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19630
fragaria_vesca	FvH4_3g44090
malus_domestica	MD03G1018500.v1.1 MD11G1019500.v1.1
prunus_persica	Prupe.6G018000_v2.0.a1 Prupe.6G018000_v2.0.a1
pyrus_communis	pycom11g01440
rosa_chinensis	RchiOBHm_Chr5g0080391 RchiOBHm_Chr5g0080421
rosa_laevigata	RLG00000036851 RLG00000036853
rosa_multiflora	Rmu_sc0000826.1_g000012 Rmu_sc0006792.1_g000023 Rmu_sc0043003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003010
rosa_rugosa	Rorug05G0468300
rosa_samantha	Rh5AG522600 Rh5BG544100 Rh5CG567700 Rh5DG554400
rosa_wichuraiana	Rw0G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	2 cut(s)	32, 356
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	451
AcsI	RAATTY	3 cut(s)	325, 342, 671
AcuI	CTGAAG	2 cut(s)	55, 575
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	5 cut(s)	214, 404, 590, 605, 671
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	6 cut(s)	55, 191, 200, 218, 565, 638
AluI	AGCT	6 cut(s)	55, 191, 200, 218, 565, 638
Alw26I	GTCTC	4 cut(s)	14, 29, 322, 463
AlwI	GGATC	1 cut(s)	451
Ama87I	CYCGRG	1 cut(s)	525
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	3 cut(s)	188, 575, 635
ApoI	RAATTY	3 cut(s)	325, 342, 671
Asp700I	GAANNNNTTC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	667
AvaI	CYCGRG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	200, 587, 647
BccI	CCATC	4 cut(s)	38, 491, 524, 646
BciT130I	CCWGG	1 cut(s)	155
BciVI	GTATCC	1 cut(s)	444
BclI	TGATCA	1 cut(s)	394
BcoDI	GTCTC	4 cut(s)	14, 29, 322, 463
BfmI	CTRYAG	2 cut(s)	363, 573
BfuAI	ACCTGC	2 cut(s)	32, 356
BfuI	GTATCC	1 cut(s)	444
BisI	GCNGC	3 cut(s)	189, 576, 636
BlpI	GCTNAGC	1 cut(s)	385
BlsI	GCNGC	3 cut(s)	190, 577, 637
Bme1390I	CCNGG	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	525
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	49, 370
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	2 cut(s)	264, 282
BmuI	ACTGGG	2 cut(s)	264, 282
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
Bpu1102I	GCTNAGC	1 cut(s)	385
BsaI	GGTCTC	3 cut(s)	14, 29, 322
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	3 cut(s)	39, 259, 277
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	139, 298, 483
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	3 cut(s)	192, 312, 399
BseNI	ACTGG	3 cut(s)	39, 259, 277
BseRI	GAGGAG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	3 cut(s)	200, 587, 647
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	525
BslFI	GGGAC	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	4 cut(s)	14, 29, 322, 463
BsmFI	GGGAC	1 cut(s)	535
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	3 cut(s)	14, 29, 322
BsoBI	CYCGRG	1 cut(s)	525
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	118, 394, 456
Bsp1720I	GCTNAGC	1 cut(s)	385
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	3 cut(s)	193, 313, 398
BspLI	GGNNCC	2 cut(s)	49, 370
BspMAI	CTGCAG	2 cut(s)	367, 577
BspMI	ACCTGC	2 cut(s)	32, 356
BspPI	GGATC	1 cut(s)	451
BspQI	GCTCTTC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	3 cut(s)	14, 29, 322
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	39, 259, 277
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	118, 394, 456
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	11, 16, 31
Bst6I	CTCTTC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	4 cut(s)	201, 321, 385, 566
BstF5I	GGATG	3 cut(s)	139, 298, 483
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	3 cut(s)	121, 397, 459
BstMAI	GTCTC	4 cut(s)	14, 29, 322, 463
BstMBI	GATC	3 cut(s)	118, 394, 456
BstMWI	GCNNNNNNNGC	4 cut(s)	168, 197, 377, 386
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	2 cut(s)	363, 573
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	3 cut(s)	200, 587, 647
BsuI	GTATCC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	3 cut(s)	139, 298, 483
BtsIMutI	CAGTG	1 cut(s)	46
BveI	ACCTGC	2 cut(s)	32, 356
Cac8I	GCNNGC	1 cut(s)	382
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	2 cut(s)	232, 445
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	4 cut(s)	201, 321, 385, 566
DpnI	GATC	3 cut(s)	120, 396, 458
DpnII	GATC	3 cut(s)	118, 394, 456
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco31I	GGTCTC	3 cut(s)	14, 29, 322
Eco57I	CTGAAG	2 cut(s)	55, 575
Eco88I	CYCGRG	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	2 cut(s)	235, 448
FaiI	YATR	5 cut(s)	185, 233, 420, 446, 642
FaqI	GGGAC	1 cut(s)	535
FatI	CATG	2 cut(s)	231, 444
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	189, 576, 636
FokI	GGATG	3 cut(s)	126, 305, 470
Fsp4HI	GCNGC	3 cut(s)	189, 576, 636
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	3 cut(s)	189, 576, 636
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	235, 448
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	3 cut(s)	424, 523, 658
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	2 cut(s)	252, 537
Hpy188I	TCNGA	3 cut(s)	74, 322, 399
Hpy188III	TCNNGA	2 cut(s)	19, 527
Hpy8I	GTNNAC	2 cut(s)	252, 537
HpyAV	CCTTC	4 cut(s)	100, 253, 599, 623
HpyCH4III	ACNGT	3 cut(s)	11, 16, 31
HpyCH4V	TGCA	5 cut(s)	27, 281, 365, 380, 575
HpyF10VI	GCNNNNNNNGC	4 cut(s)	168, 197, 377, 386
HpyF3I	CTNAG	4 cut(s)	201, 321, 385, 566
Hsp92II	CATG	2 cut(s)	235, 448
HspAI	GCGC	1 cut(s)	633
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	118, 394, 456
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	3 cut(s)	200, 587, 647
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	120, 396, 458
MboI	GATC	3 cut(s)	118, 394, 456
MboII	GAAGA	3 cut(s)	61, 351, 568
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	3 cut(s)	325, 342, 671
MlyI	GAGTC	2 cut(s)	433, 517
MnlI	CCTC	5 cut(s)	103, 173, 230, 240, 463
MroXI	GAANNNNTTC	1 cut(s)	209
MspA1I	CMGCKG	2 cut(s)	191, 389
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	168, 197, 377, 386
NdeII	GATC	3 cut(s)	118, 394, 456
NlaIII	CATG	2 cut(s)	235, 448
NlaIV	GGNNCC	2 cut(s)	49, 370
NmuCI	GTSAC	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	525
PaqCI	CACCTGC	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	658
PkrI	GCNGC	3 cut(s)	190, 577, 637
PleI	GAGTC	2 cut(s)	432, 517
PpsI	GAGTC	2 cut(s)	432, 517
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	49, 370
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	2 cut(s)	367, 577
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	74
SatI	GCNGC	3 cut(s)	189, 576, 636
Sau3AI	GATC	3 cut(s)	118, 394, 456
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	433, 517
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	373
SfcI	CTRYAG	2 cut(s)	363, 573
Sfr274I	CTCGAG	1 cut(s)	525
SlaI	CTCGAG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	3 cut(s)	325, 342, 671
SsiI	CCGC	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	11, 16, 31
TaqI	TCGA	3 cut(s)	18, 455, 526
TasI	AATT	3 cut(s)	325, 342, 671
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	658
TscAI	CASTG	1 cut(s)	46
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	3 cut(s)	188, 575, 635
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	119, 128
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	3 cut(s)	325, 342, 671
XhoI	CTCGAG	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.