Rw0G023250

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01079
OG0009940
Physical Location & Seq
Forward (+)
118315 .. 120685
2371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023250.1

Sequence Viewer

Length: 702 bp
ATGTCAAACTTTACGGTCGAGACCTGCACAGCTGAGACCAGTGATGGAGCCAAGCTCAACACAAGGCTCTTCAGACCCAGAGAAGCCCAACAACAACATCAAATGACGGAGGGCAACGATCTTGTGGTGGTTCTGGTGCATCCCTACTCTGTCCTTGGTGGCTGTCAGGGACTTTTGAGAGGCATAGCAGCTGGGTTAGCTGAGAAAGGCTTCAAAGCTGTCACTTTTGACATGAGAGGAGTTGGGAGGTCAACTGGGAAGGCTTCTCTTACTGGGTTTGCAGAAATCAAGGATGTGATTGCTGTGTGCAAATGGGTCTCAGAGAATTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGGTATGGGATTCTTGTGCCCCGATTACAGGCTCAGCGGTTGATCAGATTGAACAAGTTGTAGGATATGTGAGTCTGGGGTATCCTTTTGGCATGACTGCCTCGATCCTTTTTGGGAGACACCACAAAGCCATCCTACAATCCCCGAAACCAAAACTTTTTGTAATGGGGACTCGAGATGGGTTTACAAGTGTGAAGCAACTGAAGAACAAGCTAAGTTCTGCAGCAGGGCGTGTTGAAACACACCTTATTGAAGGAGTTAGCCACTTCCAAATGGAAGGCGCAGCTTATGATACACAGATGGTGAATCTTATCCTCGAATTTATTGTGTCGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

233

Amino Acids

25.39

Weight (kDa)

7.0

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S15 PF02129 15 - 108 4.8e-08 X-Pro dipeptidyl-peptidase (S15 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 32, 355
AciI CCGC 1 cut(s) 401
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 2 cut(s) 341, 683
AcuI CTGAAG 2 cut(s) 55, 587
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 4 cut(s) 214, 416, 602, 617
AluBI AGCT 7 cut(s) 32, 55, 191, 200, 218, 577, 650
AluI AGCT 7 cut(s) 32, 55, 191, 200, 218, 577, 650
Alw26I GTCTC 4 cut(s) 14, 29, 322, 475
AlwI GGATC 1 cut(s) 463
Ama87I CYCGRG 1 cut(s) 537
ApeKI GCWGC 3 cut(s) 188, 587, 647
ApoI RAATTY 2 cut(s) 341, 683
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 647
AsuHPI GGTGA 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 537
BaeGI GKGCMC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 200, 599, 659
BccI CCATC 4 cut(s) 38, 503, 536, 658
BciVI GTATCC 1 cut(s) 456
BclI TGATCA 1 cut(s) 406
BcoDI GTCTC 4 cut(s) 14, 29, 322, 475
BfmI CTRYAG 2 cut(s) 362, 585
BfuAI ACCTGC 2 cut(s) 32, 355
BfuI GTATCC 1 cut(s) 456
BisI GCNGC 3 cut(s) 189, 588, 648
BlpI GCTNAGC 1 cut(s) 397
BlsI GCNGC 3 cut(s) 190, 589, 649
BmeT110I CYCGRG 1 cut(s) 537
BmiI GGNNCC 1 cut(s) 49
BmrI ACTGGG 2 cut(s) 264, 282
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 2 cut(s) 264, 282
BplI GAGNNNNNCTC 2 cut(s) 39, 71
Bpu1102I GCTNAGC 1 cut(s) 397
BsaI GGTCTC 3 cut(s) 14, 29, 322
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 392
Bse1I ACTGG 3 cut(s) 39, 259, 277
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 3 cut(s) 139, 298, 495
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 4 cut(s) 24, 192, 333, 411
BseNI ACTGG 3 cut(s) 39, 259, 277
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 3 cut(s) 200, 599, 659
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 18
BsiEI CGRYCG 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 183, 547
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 4 cut(s) 14, 29, 322, 475
BsmFI GGGAC 2 cut(s) 183, 547
Bso31I GGTCTC 3 cut(s) 14, 29, 322
BsoBI CYCGRG 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 3 cut(s) 118, 406, 468
Bsp1720I GCTNAGC 1 cut(s) 397
BspACI CCGC 1 cut(s) 401
BspCNI CTCAG 4 cut(s) 25, 193, 332, 410
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 2 cut(s) 366, 589
BspMI ACCTGC 2 cut(s) 32, 355
BspPI GGATC 1 cut(s) 463
BspQI GCTCTTC 1 cut(s) 74
BspTNI GGTCTC 3 cut(s) 14, 29, 322
BsrI ACTGG 3 cut(s) 39, 259, 277
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 118, 406, 468
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 74
BstDEI CTNAG 5 cut(s) 33, 201, 319, 397, 578
BstF5I GGATG 3 cut(s) 139, 298, 495
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 3 cut(s) 121, 409, 471
BstMAI GTCTC 4 cut(s) 14, 29, 322, 475
BstMBI GATC 3 cut(s) 118, 406, 468
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstSFI CTRYAG 2 cut(s) 362, 585
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 3 cut(s) 200, 599, 659
BsuI GTATCC 1 cut(s) 456
BtsCI GGATG 3 cut(s) 139, 298, 495
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 2 cut(s) 32, 355
CfoI GCGC 1 cut(s) 647
CviAII CATG 2 cut(s) 232, 457
DdeI CTNAG 5 cut(s) 33, 201, 319, 397, 578
DpnI GATC 3 cut(s) 120, 408, 470
DpnII GATC 3 cut(s) 118, 406, 468
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 154
Eco31I GGTCTC 3 cut(s) 14, 29, 322
Eco57I CTGAAG 2 cut(s) 55, 587
Eco88I CYCGRG 1 cut(s) 537
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 235, 460
FaiI YATR 6 cut(s) 185, 233, 370, 432, 458, 654
FaqI GGGAC 2 cut(s) 183, 547
FatI CATG 2 cut(s) 231, 456
FbaI TGATCA 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 189, 588, 648
FokI GGATG 3 cut(s) 126, 305, 482
Fsp4HI GCNGC 3 cut(s) 189, 588, 648
GlaI GCGC 1 cut(s) 646
GluI GCNGC 3 cut(s) 189, 588, 648
GsaI CCCAGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 647
Hin1II CATG 2 cut(s) 235, 460
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 4 cut(s) 374, 436, 535, 670
HphI GGTGA 1 cut(s) 679
Hpy166II GTNNAC 2 cut(s) 252, 549
Hpy188I TCNGA 3 cut(s) 74, 322, 411
Hpy188III TCNNGA 2 cut(s) 19, 539
Hpy8I GTNNAC 2 cut(s) 252, 549
HpyAV CCTTC 3 cut(s) 253, 611, 635
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 6 cut(s) 27, 139, 281, 309, 364, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 5 cut(s) 33, 201, 319, 397, 578
Hsp92II CATG 2 cut(s) 235, 460
HspAI GCGC 1 cut(s) 645
Ksp22I TGATCA 1 cut(s) 406
Kzo9I GATC 3 cut(s) 118, 406, 468
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 3 cut(s) 200, 599, 659
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 120, 408, 470
MboI GATC 3 cut(s) 118, 406, 468
MboII GAAGA 3 cut(s) 61, 350, 580
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 3 cut(s) 325, 341, 683
MlyI GAGTC 2 cut(s) 445, 529
MnlI CCTC 6 cut(s) 103, 173, 230, 240, 475, 689
MroXI GAANNNNTTC 1 cut(s) 209
MspA1I CMGCKG 3 cut(s) 32, 191, 401
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 3 cut(s) 118, 406, 468
NlaIII CATG 2 cut(s) 235, 460
NlaIV GGNNCC 1 cut(s) 49
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 537
PciSI GCTCTTC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 374, 670
PkrI GCNGC 3 cut(s) 190, 589, 649
PleI GAGTC 2 cut(s) 444, 529
PpsI GAGTC 2 cut(s) 444, 529
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 2 cut(s) 366, 589
PvuII CAGCTG 2 cut(s) 32, 191
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 3 cut(s) 189, 588, 648
Sau3AI GATC 3 cut(s) 118, 406, 468
SchI GAGTC 2 cut(s) 445, 529
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 362, 585
Sfr274I CTCGAG 1 cut(s) 537
SlaI CTCGAG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 537
SmoI CTYRAG 1 cut(s) 537
Sse9I AATT 3 cut(s) 325, 341, 683
SsiI CCGC 1 cut(s) 401
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 4 cut(s) 18, 467, 538, 681
TasI AATT 3 cut(s) 325, 341, 683
TfiI GAWTC 2 cut(s) 374, 670
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 188, 587, 647
Tsp45I GTSAC 1 cut(s) 220
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 46
XapI RAATTY 2 cut(s) 341, 683
XhoI CTCGAG 1 cut(s) 537
XmnI GAANNNNTTC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.