Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009940

Physical Location & Seq

Genomic Coordinates Reverse (-)

64480418 .. 64483093

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0468300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGTTTAGCTTCACATGGGAGAAACCTTGCATTTCAGATTGGTAATCCAAAATCAAGGCTTTTGATTCGGGTCCACTATTACTGCAGTTATAAATCAGAGAGTAAAAAACAAGAGGATGATGAAACAGTGAGGGAAATCTGTACCATTCTGAAGCGAAGCAGAGAGTGGGAGTCCGTGTTGAGCTCATCAGGGTTTCCCAAGAAGCTAAACCCTTGTGTGGTTCGATCCATTCTTCAACAACACCACCAGCTTTTTGGGCATGCCCATGGTGTGTTGGAGAGAATGGTTAGGACCCGGAAGCCGGCTTTAGAAGTTTTGGATTGTGTTGTTAGGTGTTTTAGAGAGTTTGAGGGGTCTGATATGGTGGTTTTTGAGATTTTGATTAATGTGTTTACGATGGGGGGTTGGTTTTATGAGGCTGCTGATGTGTTTTTGGGTGTTAGGAGTGTTGGGATTTTGCCGAGATTGGAATGCTGTAATTCTCTGTTGAATGAGTTGTTGAAGGGTAATAGGATGAGGCTGTTCTGCAGAATTTGTTCAGTTAATCTGAAATGCCATTTTTATTTTCTGTTGTGTTTTCTTTGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

197

Amino Acids

22.79

Weight (kDa)

8.96

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19630
fragaria_vesca	FvH4_3g44090
malus_domestica	MD03G1018500.v1.1 MD11G1019500.v1.1
prunus_persica	Prupe.6G018000_v2.0.a1 Prupe.6G018000_v2.0.a1
pyrus_communis	pycom11g01440
rosa_chinensis	RchiOBHm_Chr5g0080391 RchiOBHm_Chr5g0080421
rosa_laevigata	RLG00000036851 RLG00000036853
rosa_multiflora	Rmu_sc0000826.1_g000012 Rmu_sc0006792.1_g000023 Rmu_sc0043003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003010
rosa_rugosa	Rorug05G0468300
rosa_samantha	Rh5AG522600 Rh5BG544100 Rh5CG567700 Rh5DG554400
rosa_wichuraiana	Rw0G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AclWI	GGATC	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	220, 304
AgsI	TTSAA	3 cut(s)	239, 493, 505
AluBI	AGCT	4 cut(s)	11, 186, 208, 253
AluI	AGCT	4 cut(s)	11, 186, 208, 253
Alw21I	GWGCWC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	534
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	538
AspS9I	GGNCC	2 cut(s)	73, 294
AsuC2I	CCSGG	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	73, 294
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	298
BfmI	CTRYAG	2 cut(s)	85, 529
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	298
Bme18I	GGWCC	2 cut(s)	73, 294
BmgT120I	GGNCC	2 cut(s)	73, 294
BmiI	GGNNCC	2 cut(s)	74, 296
BmrFI	CCNGG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	268
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 304
Bse118I	RCCGGY	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	2 cut(s)	124, 522
BseLI	CCNNNNNNNGG	2 cut(s)	220, 304
BseXI	GCAGC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	298, 305
BslI	CCNNNNNNNGG	2 cut(s)	220, 304
BsmI	GAATGC	1 cut(s)	479
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	227
Bsp19I	CCATGG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	74, 296
BspMAI	CTGCAG	2 cut(s)	89, 533
BspPI	GGATC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	264, 306
BstDSI	CCRYGG	1 cut(s)	268
BstF5I	GGATG	2 cut(s)	124, 522
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	2 cut(s)	85, 529
BstV1I	GCAGC	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	268
BtsCI	GGATG	2 cut(s)	124, 522
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	264, 306
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	73, 294
Csp6I	GTAC	1 cut(s)	144
CviAII	CATG	3 cut(s)	17, 263, 269
CviJI	RGCY	9 cut(s)	11, 61, 186, 208, 253, 304, 308, 422, 523
CviKI_1	RGCY	9 cut(s)	11, 61, 186, 208, 253, 304, 308, 422, 523
CviQI	GTAC	1 cut(s)	144
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	73, 294
Eco53kI	GAGCTC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	186
EcoO109I	RGGNCCY	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	268
FaeI	CATG	3 cut(s)	20, 266, 272
FaiI	YATR	6 cut(s)	18, 93, 264, 270, 365, 417
FatI	CATG	3 cut(s)	16, 262, 268
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	2 cut(s)	131, 529
FriOI	GRGCYC	1 cut(s)	188
Fsp4HI	GCNGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	423
HapII	CCGG	2 cut(s)	298, 305
Hin1II	CATG	3 cut(s)	20, 266, 272
HinfI	GANTC	2 cut(s)	67, 173
HpaII	CCGG	2 cut(s)	298, 305
Hpy166II	GTNNAC	2 cut(s)	76, 396
Hpy188I	TCNGA	5 cut(s)	39, 100, 153, 361, 552
Hpy8I	GTNNAC	2 cut(s)	76, 396
HpyAV	CCTTC	1 cut(s)	499
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	32, 87, 531, 588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
Hsp92II	CATG	3 cut(s)	20, 266, 272
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	227
LpnPI	CCDG	4 cut(s)	177, 263, 311, 318
Lsp1109I	GCAGC	1 cut(s)	409
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	2 cut(s)	481, 534
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	5 cut(s)	109, 126, 346, 412, 513
MroNI	GCCGGC	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	2 cut(s)	387, 546
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	2 cut(s)	298, 305
MspR9I	CCNGG	1 cut(s)	298
Mva1269I	GAATGC	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	259
NaeI	GCCGGC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	298
NcoI	CCATGG	1 cut(s)	268
NdeII	GATC	1 cut(s)	227
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	3 cut(s)	20, 266, 272
NlaIV	GGNNCC	2 cut(s)	74, 296
NmeAIII	GCCGAG	1 cut(s)	489
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PctI	GAATGC	1 cut(s)	479
PdiI	GCCGGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	294
PshBI	ATTAAT	1 cut(s)	387
PsiI	TTATAA	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	74, 296
PspPI	GGNCC	2 cut(s)	73, 294
PspPPI	RGGWCCY	1 cut(s)	294
PstI	CTGCAG	2 cut(s)	89, 533
RsaI	GTAC	1 cut(s)	145
RsaNI	GTAC	1 cut(s)	144
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	387, 546
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	73, 294
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	7 cut(s)	13, 30, 188, 210, 255, 338, 593
SfcI	CTRYAG	2 cut(s)	85, 529
SinI	GGWCC	2 cut(s)	73, 294
SmiMI	CAYNNNNRTG	1 cut(s)	267
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	2 cut(s)	481, 534
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	481, 534
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	387, 546
Tru9I	TTAA	2 cut(s)	387, 546
TscAI	CASTG	1 cut(s)	135
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	135
VpaK11BI	GGWCC	2 cut(s)	73, 294
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.