Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043003.1

Orthogroup ID

OG0009940

Physical Location & Seq

Genomic Coordinates Reverse (-)

293 .. 721

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgtcaaactgtactgtcgagacctgcacagttgagaccagtgatggagccaagctcaacacaaggctcttcagacccagagaagcccaacaacaacatcaaatgaaggagggcaatgatcttgtggtggttctggttcatccctactctgtcctgggtggctgtcagggccttttgagaggcatagcagctgggttagctgagaaaggcttcaaagctgtcacttttgacatgagaggagttgggaggtcaactgggaaggcttctcttactgggtttgcagaaatcaaggatgtgattgctgtctgtaaatgggtctctgagaatttgtctgctgatagaattttgcttgtgggttcttctgcaggtatgggattcttgtatgtgtttgttttgtatatgtgggcagtgattagatttcgtgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

142

Amino Acids

15.46

Weight (kDa)

9.02

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009940)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19630
fragaria_vesca	FvH4_3g44090
malus_domestica	MD03G1018500.v1.1 MD11G1019500.v1.1
prunus_persica	Prupe.6G018000_v2.0.a1 Prupe.6G018000_v2.0.a1
pyrus_communis	pycom11g01440
rosa_chinensis	RchiOBHm_Chr5g0080391 RchiOBHm_Chr5g0080421
rosa_laevigata	RLG00000036851 RLG00000036853
rosa_multiflora	Rmu_sc0000826.1_g000012 Rmu_sc0006792.1_g000023 Rmu_sc0043003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00003010
rosa_rugosa	Rorug05G0468300
rosa_samantha	Rh5AG522600 Rh5BG544100 Rh5CG567700 Rh5DG554400
rosa_wichuraiana	Rw0G023250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	32, 356
AcsI	RAATTY	2 cut(s)	325, 342
AcuI	CTGAAG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	4 cut(s)	55, 191, 200, 218
AluI	AGCT	4 cut(s)	55, 191, 200, 218
Alw26I	GTCTC	3 cut(s)	14, 29, 322
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	325, 342
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	3 cut(s)	14, 29, 322
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	32, 356
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	155
BmrI	ACTGGG	2 cut(s)	264, 282
BmuI	ACTGGG	2 cut(s)	264, 282
BplI	GAGNNNNNCTC	2 cut(s)	39, 71
BsaI	GGTCTC	3 cut(s)	14, 29, 322
BsaJI	CCNNGG	1 cut(s)	154
Bse1I	ACTGG	3 cut(s)	39, 259, 277
Bse3DI	GCAATG	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	2 cut(s)	139, 298
BseMI	GCAATG	1 cut(s)	121
BseMII	CTCAG	2 cut(s)	192, 312
BseNI	ACTGG	3 cut(s)	39, 259, 277
BseRI	GAGGAG	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	10
BshFI	GGCC	1 cut(s)	171
BsmAI	GTCTC	3 cut(s)	14, 29, 322
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	3 cut(s)	14, 29, 322
Bsp143I	GATC	1 cut(s)	118
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	193, 313
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	2 cut(s)	32, 356
BspQI	GCTCTTC	1 cut(s)	74
BspTNI	GGTCTC	3 cut(s)	14, 29, 322
BsrDI	GCAATG	1 cut(s)	121
BsrI	ACTGG	3 cut(s)	39, 259, 277
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	11, 16, 31
Bst6I	CTCTTC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	201, 321
BstF5I	GGATG	2 cut(s)	139, 298
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	3 cut(s)	14, 29, 322
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 197
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	139, 298
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	46, 414
BveI	ACCTGC	2 cut(s)	32, 356
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	2 cut(s)	201, 321
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco31I	GGTCTC	3 cut(s)	14, 29, 322
Eco57I	CTGAAG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	235
FaiI	YATR	6 cut(s)	185, 233, 371, 384, 399, 401
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	2 cut(s)	126, 305
Fsp4HI	GCNGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	375
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	74, 322
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	100, 253
HpyCH4III	ACNGT	3 cut(s)	11, 16, 31
HpyCH4V	TGCA	3 cut(s)	27, 281, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 197
HpyF3I	CTNAG	2 cut(s)	201, 321
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	2 cut(s)	61, 351
MluCI	AATT	2 cut(s)	325, 342
MnlI	CCTC	4 cut(s)	103, 173, 230, 240
MroXI	GAANNNNTTC	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	191
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	168, 197
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	375
PkrI	GCNGC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	367
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	74
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	7 cut(s)	26, 57, 193, 202, 220, 251, 370
SfcI	CTRYAG	1 cut(s)	363
Sse9I	AATT	2 cut(s)	325, 342
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	11, 16, 31
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	325, 342
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	375
TscAI	CASTG	2 cut(s)	46, 414
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	119, 128
TspRI	CASTG	2 cut(s)	46, 414
XapI	RAATTY	2 cut(s)	325, 342
XmnI	GAANNNNTTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.