RchiOBHm_Chr5g0080421

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009940
Physical Location & Seq
Reverse (-)
86416327 .. 86418110
1784 bp
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UTR
Exon/CDS
Intron
PRQ35473

Sequence Viewer

Length: 303 bp
ATGAAGGAGGGCAATGATCTTGTGGTGGTTCTGGTCCATCCCTACTCTGTCCTGGGTGGCTGTCAAGGCCTTTGGAGAGGCATAGCAGCAGGGTTAGCTGAGAAAGGTTTCAAAGCTGTCACTTTTGACATGAGAGGAGTTGGAAGGTCAACTGGAAAGGCTTCTCTTACTGGGTTTTCAGAAATCAAGGATGTGATTTCTGTGTGCAAATGGGTCTCTGAGAATTTGTCTGCTAATAGAAGTTTGCTTGTGGGTTCTTCTGCAGCTCAACTGTCCTTTAATCATCTAAAGTTGGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

100

Amino Acids

10.59

Weight (kDa)

9.39

Isoelectric Point (pI)

16.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S15 PF02129 13 - 78 6.4e-07 X-Pro dipeptidyl-peptidase (S15 family)
Abhydrolase_1 PF00561 19 - 66 2.5e-06 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 223
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 98, 116, 266
AluI AGCT 3 cut(s) 98, 116, 266
Alw26I GTCTC 1 cut(s) 220
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 86, 263
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 2 cut(s) 107, 160
AspS9I GGNCC 1 cut(s) 34
AvaII GGWCC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 98, 275
BccI CCATC 1 cut(s) 45
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 220
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 2 cut(s) 87, 264
BlsI GCNGC 2 cut(s) 88, 265
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 157, 175
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 2 cut(s) 37, 196
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 2 cut(s) 90, 210
BseNI ACTGG 2 cut(s) 157, 175
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 98, 275
BshFI GGCC 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 220
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 2 cut(s) 91, 211
BspMAI CTGCAG 1 cut(s) 265
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 157, 175
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 273
BstDEI CTNAG 2 cut(s) 99, 219
BstF5I GGATG 2 cut(s) 37, 196
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 220
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 66, 95
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 2 cut(s) 98, 275
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 2 cut(s) 37, 196
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 1 cut(s) 130
CviJI RGCY 6 cut(s) 60, 69, 98, 116, 161, 266
CviKI_1 RGCY 6 cut(s) 60, 69, 98, 116, 161, 266
DdeI CTNAG 2 cut(s) 99, 219
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco147I AGGCCT 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 51
FaeI CATG 1 cut(s) 133
FaiI YATR 2 cut(s) 83, 131
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 87, 264
FokI GGATG 2 cut(s) 24, 203
Fsp4HI GCNGC 2 cut(s) 87, 264
GluI GCNGC 2 cut(s) 87, 264
HaeIII GGCC 1 cut(s) 69
Hin1II CATG 1 cut(s) 133
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 181, 220
Hpy8I GTNNAC 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 207, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 95
HpyF3I CTNAG 2 cut(s) 99, 219
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 6 cut(s) 17, 38, 65, 75, 138, 156
Lsp1109I GCAGC 2 cut(s) 98, 275
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 249
MluCI AATT 1 cut(s) 223
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 2 cut(s) 71, 128
MroXI GAANNNNTTC 2 cut(s) 107, 160
MseI TTAA 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 66, 95
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 133
NmuCI GTSAC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 107, 160
PkrI GCNGC 2 cut(s) 88, 265
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspPI GGNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 265
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 2 cut(s) 87, 264
Sau3AI GATC 1 cut(s) 16
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 53
SetI ASST 5 cut(s) 100, 109, 118, 149, 268
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 34
Sse9I AATT 1 cut(s) 223
SseBI AGGCCT 1 cut(s) 69
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 273
TasI AATT 1 cut(s) 223
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 2 cut(s) 86, 263
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 2 cut(s) 107, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.