Rroxscaffold_1G00003010

X-Pro dipeptidyl-peptidase (S15 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009940
Physical Location & Seq
Forward (+)
3507368 .. 3509791
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003010.1

Sequence Viewer

Length: 690 bp
ATGTCAAACTGTACGGTCGAGACCTGCACAGTTGAGACCAGTGATGGAGCCAAGCTCAACACAAGGCTCTTCAGACCCAGAGAAGCCCAACAACAACATCAAATGAAGGAGGGCAATGATCTTGTGGTGGTTCTGGTGCATCCCTACTCTGTCCTTGGTGGCTGTCAGGGACTTTTGAGAGGCATGGCAGCTGGGTTAGCTGAGAAAGGCTTCAAAGCTGTCACTTTTGACATGAGAGGAGTTGGGAGGTCTACTGGGAAGGCTTCTCTTACTGGGTTTGCAGAAATCAAGGATGTGATTGCTGTCTGCAAATGGGTCTCTGAGAATTTGTCTGCTAATAGAATTTTGCTTGTGGGTTCTTCTGCAGGTGCCCCGATTGCAGGCTCAGCGGTTGATCAGATTGAAGAAGTTGTAGGATATGTGAGTCTGGGGTATCCTTTTGGCATGACTGCCTCGATCCTTTTTGGGAGACACCACAAAGCCATCCTACAATCCCCGAAACCAAAACTTTTTGTAATGGGGACTCGAGATGGGTTTACAAGTGTGAAGCAACTGAAGAACAAGCTAAGTTCTGCAGCAGGGCGTGTTGAAACACACCTTATTGAAGGAGTTAGCCACTTCCAAATGGAAGGCGCAGCTTATGATACACAGATGGTGAATCTTATCCTTGAATTTATTGTGTCGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Hydrolase_4 Peptidase_S15

Protein Analysis

229

Amino Acids

24.56

Weight (kDa)

8.67

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S15 PF02129 15 - 124 5.9e-09 X-Pro dipeptidyl-peptidase (S15 family)
Hydrolase_4 PF12146 57 - 144 1.4e-07 Serine aminopeptidase, S33
Abhydrolase_1 PF00561 58 - 135 2.5e-07 alpha/beta hydrolase fold
Abhydrolase_11 PF20408 59 - 206 7e-10 Alpha/beta hydrolase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 2 cut(s) 32, 356
AccB1I GGYRCC 1 cut(s) 368
AccI GTMKAC 1 cut(s) 251
AciI CCGC 1 cut(s) 389
AclWI GGATC 1 cut(s) 451
AcsI RAATTY 3 cut(s) 325, 342, 671
AcuI CTGAAG 2 cut(s) 55, 575
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 5 cut(s) 214, 404, 590, 605, 671
AluBI AGCT 6 cut(s) 55, 191, 200, 218, 565, 638
AluI AGCT 6 cut(s) 55, 191, 200, 218, 565, 638
Alw26I GTCTC 4 cut(s) 14, 29, 322, 463
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 525
ApeKI GCWGC 3 cut(s) 188, 575, 635
ApoI RAATTY 3 cut(s) 325, 342, 671
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 635
AsuHPI GGTGA 1 cut(s) 667
AvaI CYCGRG 1 cut(s) 525
BaeGI GKGCMC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 368
BbvI GCAGC 3 cut(s) 200, 587, 647
BccI CCATC 4 cut(s) 38, 491, 524, 646
BciVI GTATCC 1 cut(s) 444
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 4 cut(s) 14, 29, 322, 463
BfmI CTRYAG 2 cut(s) 363, 573
BfuAI ACCTGC 2 cut(s) 32, 356
BfuI GTATCC 1 cut(s) 444
BisI GCNGC 3 cut(s) 189, 576, 636
BlpI GCTNAGC 1 cut(s) 385
BlsI GCNGC 3 cut(s) 190, 577, 637
BmeT110I CYCGRG 1 cut(s) 525
BmiI GGNNCC 2 cut(s) 49, 370
BmrI ACTGGG 2 cut(s) 264, 282
BmsI GCATC 1 cut(s) 148
BmuI ACTGGG 2 cut(s) 264, 282
BplI GAGNNNNNCTC 2 cut(s) 39, 71
Bpu1102I GCTNAGC 1 cut(s) 385
BsaI GGTCTC 3 cut(s) 14, 29, 322
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 39, 259, 277
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 3 cut(s) 139, 298, 483
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 3 cut(s) 192, 312, 399
BseNI ACTGG 3 cut(s) 39, 259, 277
BseRI GAGGAG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 3 cut(s) 200, 587, 647
BseYI CCCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 18
BshNI GGYRCC 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 525
BslFI GGGAC 2 cut(s) 183, 535
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 4 cut(s) 14, 29, 322, 463
BsmFI GGGAC 2 cut(s) 183, 535
Bso31I GGTCTC 3 cut(s) 14, 29, 322
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 3 cut(s) 118, 394, 456
Bsp1720I GCTNAGC 1 cut(s) 385
BspACI CCGC 1 cut(s) 389
BspCNI CTCAG 3 cut(s) 193, 313, 398
BspLI GGNNCC 2 cut(s) 49, 370
BspMAI CTGCAG 2 cut(s) 367, 577
BspMI ACCTGC 2 cut(s) 32, 356
BspPI GGATC 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 368
BspTNI GGTCTC 3 cut(s) 14, 29, 322
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 3 cut(s) 39, 259, 277
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 3 cut(s) 118, 394, 456
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 11, 16, 31
Bst6I CTCTTC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 4 cut(s) 201, 321, 385, 566
BstF5I GGATG 3 cut(s) 139, 298, 483
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 3 cut(s) 121, 397, 459
BstMAI GTCTC 4 cut(s) 14, 29, 322, 463
BstMBI GATC 3 cut(s) 118, 394, 456
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 3 cut(s) 197, 377, 386
BstSFI CTRYAG 2 cut(s) 363, 573
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 3 cut(s) 200, 587, 647
BsuI GTATCC 1 cut(s) 444
BtsCI GGATG 3 cut(s) 139, 298, 483
BtsIMutI CAGTG 1 cut(s) 46
BveI ACCTGC 2 cut(s) 32, 356
Cac8I GCNNGC 1 cut(s) 382
CfoI GCGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 12
CviAII CATG 3 cut(s) 184, 232, 445
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 4 cut(s) 201, 321, 385, 566
DpnI GATC 3 cut(s) 120, 396, 458
DpnII GATC 3 cut(s) 118, 394, 456
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 154
Eco31I GGTCTC 3 cut(s) 14, 29, 322
Eco57I CTGAAG 2 cut(s) 55, 575
Eco88I CYCGRG 1 cut(s) 525
EcoT14I CCWWGG 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 3 cut(s) 187, 235, 448
FaiI YATR 5 cut(s) 185, 233, 420, 446, 642
FaqI GGGAC 2 cut(s) 183, 535
FatI CATG 3 cut(s) 183, 231, 444
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 189, 576, 636
FokI GGATG 3 cut(s) 126, 305, 470
Fsp4HI GCNGC 3 cut(s) 189, 576, 636
GlaI GCGC 1 cut(s) 634
GluI GCNGC 3 cut(s) 189, 576, 636
GsaI CCCAGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 635
Hin1II CATG 3 cut(s) 187, 235, 448
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 3 cut(s) 424, 523, 658
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 2 cut(s) 252, 537
Hpy188I TCNGA 3 cut(s) 74, 322, 399
Hpy188III TCNNGA 2 cut(s) 19, 527
Hpy8I GTNNAC 2 cut(s) 252, 537
HpyAV CCTTC 4 cut(s) 100, 253, 599, 623
HpyCH4III ACNGT 3 cut(s) 11, 16, 31
HpyCH4V TGCA 7 cut(s) 27, 139, 281, 309, 365, 380, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 377, 386
HpyF3I CTNAG 4 cut(s) 201, 321, 385, 566
Hsp92II CATG 3 cut(s) 187, 235, 448
HspAI GCGC 1 cut(s) 633
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 3 cut(s) 118, 394, 456
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 3 cut(s) 200, 587, 647
LweI GCATC 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 220
MalI GATC 3 cut(s) 120, 396, 458
MboI GATC 3 cut(s) 118, 394, 456
MboII GAAGA 4 cut(s) 61, 351, 416, 568
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 325, 342, 671
MlyI GAGTC 2 cut(s) 433, 517
MnlI CCTC 5 cut(s) 103, 173, 230, 240, 463
MroXI GAANNNNTTC 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 191, 389
MwoI GCNNNNNNNGC 3 cut(s) 197, 377, 386
NdeII GATC 3 cut(s) 118, 394, 456
NlaIII CATG 3 cut(s) 187, 235, 448
NlaIV GGNNCC 2 cut(s) 49, 370
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 525
PaqCI CACCTGC 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 658
PkrI GCNGC 3 cut(s) 190, 577, 637
PleI GAGTC 2 cut(s) 432, 517
PpsI GAGTC 2 cut(s) 432, 517
PspFI CCCAGC 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 49, 370
PstI CTGCAG 2 cut(s) 367, 577
PvuII CAGCTG 1 cut(s) 191
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 74
SatI GCNGC 3 cut(s) 189, 576, 636
Sau3AI GATC 3 cut(s) 118, 394, 456
SchI GAGTC 2 cut(s) 433, 517
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 2 cut(s) 363, 573
Sfr274I CTCGAG 1 cut(s) 525
SlaI CTCGAG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 525
SmoI CTYRAG 1 cut(s) 525
Sse9I AATT 3 cut(s) 325, 342, 671
SsiI CCGC 1 cut(s) 389
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 3 cut(s) 11, 16, 31
TaqI TCGA 3 cut(s) 18, 455, 526
TasI AATT 3 cut(s) 325, 342, 671
TfiI GAWTC 1 cut(s) 658
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 3 cut(s) 188, 575, 635
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 1 cut(s) 46
XapI RAATTY 3 cut(s) 325, 342, 671
XhoI CTCGAG 1 cut(s) 525
XmiI GTMKAC 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.