AT5G24460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014384
Physical Location & Seq
Forward (+)
8354637 .. 8355925
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24460.1

Sequence Viewer

Length: 903 bp
ATGTTCGTTGGCCCATCTCCGCCGCACACACCACTCGTTAACCGCCGTAACATCAACAACCACCGGCCTCGTAACGCAACCGTCACCTCCGCTTTACCTGATATTTTCCTCGCGGCGGTCTCTCTCCTTTTCCTCTGGTCATCTCCTAAACCTCTAGTCTCTCTTCCTCCGAACAGATTCTCTTTCCCTCTAAATCCTCGCCGTCGATCCATCACCGCCATGTCTCGCCGATCTCCTCCTCCTCCTCCTCCTACTCAACGCTTCGCTAATCCTCAATCTCTCTCCGATTGGCTCGAATCGCGATTACCTTCCGATTCATTCGCCGCTTGGGGAGTCAAACCGGGAACCAAAAACGTTCATAACCTCTGGCTAGAACTCTCCGACGGCGAAACTTCTCTCGCCGATTCAACTCCTCCAGTACGCACCGTCAACGTCGTCACCGTTCGAGTAATCGGAAAAAACGGACGAATCCTAGTGGAAGCTCATCAGGAATTATCCGATGGGAGTATTCGTGAAAGATTTCGTCCTTTATCAGAGAAAATGAAGCCTGAAGAATCTCCCGACGAAGCAGTTTTTCGCGCCATAAAAGAAGAGCTCGGATCTATCTTCAATGGCGATGGTGATAACATTGGACAGAGAATTAAGATTCTTCCCGGAACTTATAACAGAAGAGTTGAAGAAAGGAACTCGCTATCGTATCCAGGATTACCGGCGCGTTACGCTCTTCACTCTGTGAATGCAACGGTGGAGGGATTACCGGAGCAAGATTTCTGTACGGAGGAAAAAGAGTACGAGGGAGGAGACTCGACGAAAGATTCGGTTGAAACACTCGCCGCTGGGAATGCTGTAACTGTGAAACGACATTACTGGAAATGGGTTAGTCCTGATTCGATTCGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

300

Amino Acids

33.45

Weight (kDa)

9.21

Isoelectric Point (pI)

69.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccII CGCG 4 cut(s) 113, 301, 579, 715
AciI CCGC 9 cut(s) 20, 23, 43, 90, 113, 116, 216, 324, 834
AclI AACGTT 1 cut(s) 354
AclWI GGATC 2 cut(s) 201, 607
AcuI CTGAAG 1 cut(s) 570
AdeI CACNNNGTG 1 cut(s) 733
AfaI GTAC 3 cut(s) 420, 775, 791
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 408, 610, 677, 824
AjnI CCWGG 1 cut(s) 700
AluBI AGCT 2 cut(s) 482, 595
AluI AGCT 2 cut(s) 482, 595
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 4 cut(s) 124, 163, 228, 795
AlwI GGATC 2 cut(s) 201, 607
AoxI GGCC 2 cut(s) 10, 65
ArsI GACNNNNNNTTYG 2 cut(s) 799, 831
Asp700I GAANNNNTTC 2 cut(s) 176, 519
AspLEI GCGC 2 cut(s) 581, 715
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 2 cut(s) 342, 654
AsuHPI GGTGA 4 cut(s) 76, 205, 430, 632
BanII GRGCYC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 597
BccI CCATC 4 cut(s) 22, 218, 494, 611
BceAI ACGGC 3 cut(s) 30, 186, 400
BciT130I CCWGG 1 cut(s) 702
BciVI GTATCC 1 cut(s) 708
BcnI CCSGG 2 cut(s) 342, 654
BcoDI GTCTC 4 cut(s) 124, 163, 228, 795
BfaI CTAG 3 cut(s) 155, 371, 473
BfuI GTATCC 1 cut(s) 708
BisI GCNGC 4 cut(s) 23, 114, 324, 834
BlsI GCNGC 4 cut(s) 24, 115, 325, 835
Bme1390I CCNGG 3 cut(s) 342, 654, 702
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 3 cut(s) 342, 654, 702
BpmI CTGGAG 1 cut(s) 399
BpuMI CCSGG 2 cut(s) 342, 654
BsaI GGTCTC 1 cut(s) 124
BsaWI WCCGGW 1 cut(s) 757
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 115
Bse118I RCCGGY 2 cut(s) 63, 709
Bse1I ACTGG 2 cut(s) 416, 872
BseBI CCWGG 1 cut(s) 702
BseLI CCNNNNNNNGG 1 cut(s) 115
BseNI ACTGG 2 cut(s) 416, 872
BseRI GAGGAG 7 cut(s) 225, 228, 231, 234, 237, 402, 813
BseYI CCCAGC 1 cut(s) 836
Bsh1236I CGCG 4 cut(s) 113, 301, 579, 715
BshFI GGCC 2 cut(s) 12, 67
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 5 cut(s) 64, 341, 654, 710, 758
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 4 cut(s) 124, 163, 228, 795
BsmI GAATGC 2 cut(s) 742, 847
BsnI GGCC 2 cut(s) 12, 67
Bso31I GGTCTC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 597
Bsp143I GATC 4 cut(s) 206, 230, 599, 896
Bsp68I TCGCGA 1 cut(s) 301
BspACI CCGC 9 cut(s) 20, 23, 43, 90, 113, 116, 216, 324, 834
BspANI GGCC 2 cut(s) 12, 67
BspFNI CGCG 4 cut(s) 113, 301, 579, 715
BspLI GGNNCC 1 cut(s) 346
BspPI GGATC 2 cut(s) 201, 607
BspQI GCTCTTC 2 cut(s) 585, 729
BspTNI GGTCTC 1 cut(s) 124
BsrFI RCCGGY 2 cut(s) 63, 709
BsrI ACTGG 2 cut(s) 416, 872
BssAI RCCGGY 2 cut(s) 63, 709
BssMI GATC 4 cut(s) 206, 230, 599, 896
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 5 cut(s) 82, 427, 442, 745, 853
Bst6I CTCTTC 4 cut(s) 168, 585, 664, 729
BstFNI CGCG 4 cut(s) 113, 301, 579, 715
BstHHI GCGC 2 cut(s) 581, 715
BstKTI GATC 4 cut(s) 209, 233, 602, 899
BstMAI GTCTC 4 cut(s) 124, 163, 228, 795
BstMBI GATC 4 cut(s) 206, 230, 599, 896
BstMWI GCNNNNNNNGC 3 cut(s) 298, 719, 842
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 3 cut(s) 340, 652, 700
BstUI CGCG 4 cut(s) 113, 301, 579, 715
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BsuI GTATCC 1 cut(s) 708
BsuRI GGCC 2 cut(s) 12, 67
BtgZI GCGATG 1 cut(s) 630
BtuMI TCGCGA 1 cut(s) 301
CfoI GCGC 2 cut(s) 581, 715
Cfr10I RCCGGY 2 cut(s) 63, 709
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 3 cut(s) 419, 774, 790
CviAII CATG 1 cut(s) 220
CviJI RGCY 7 cut(s) 12, 67, 292, 370, 482, 547, 595
CviKI_1 RGCY 7 cut(s) 12, 67, 292, 370, 482, 547, 595
CviQI GTAC 3 cut(s) 419, 774, 790
DpnI GATC 4 cut(s) 208, 232, 601, 898
DpnII GATC 4 cut(s) 206, 230, 599, 896
DraIII CACNNNGTG 1 cut(s) 733
Eam1104I CTCTTC 4 cut(s) 168, 585, 664, 729
EarI CTCTTC 4 cut(s) 168, 585, 664, 729
EciI GGCGGA 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 597
Eco31I GGTCTC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 595
Eco57I CTGAAG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 597
FaeI CATG 1 cut(s) 223
FaiI YATR 4 cut(s) 221, 360, 584, 663
FatI CATG 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 23, 114, 324, 834
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 4 cut(s) 23, 114, 324, 834
FspBI CTAG 3 cut(s) 155, 371, 473
GlaI GCGC 2 cut(s) 580, 714
GluI GCNGC 4 cut(s) 23, 114, 324, 834
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 1 cut(s) 399
HaeIII GGCC 2 cut(s) 12, 67
HapII CCGG 5 cut(s) 64, 341, 654, 710, 758
HhaI GCGC 2 cut(s) 581, 715
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 2 cut(s) 579, 713
HinP1I GCGC 2 cut(s) 579, 713
HincII GTYRAC 2 cut(s) 40, 430
HindII GTYRAC 2 cut(s) 40, 430
HpaI GTTAAC 1 cut(s) 40
HpaII CCGG 5 cut(s) 64, 341, 654, 710, 758
HphI GGTGA 4 cut(s) 76, 205, 430, 632
Hpy166II GTNNAC 2 cut(s) 40, 430
Hpy188I TCNGA 8 cut(s) 171, 286, 313, 382, 455, 499, 535, 599
Hpy188III TCNNGA 5 cut(s) 300, 488, 512, 560, 884
Hpy8I GTNNAC 2 cut(s) 40, 430
Hpy99I CGWCG 5 cut(s) 207, 386, 437, 566, 811
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 5 cut(s) 82, 427, 442, 745, 853
HpyCH4IV ACGT 2 cut(s) 354, 432
HpyCH4V TGCA 1 cut(s) 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 719, 842
HpySE526I ACGT 2 cut(s) 354, 432
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 2 cut(s) 579, 713
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 4 cut(s) 206, 230, 599, 896
LguI GCTCTTC 2 cut(s) 585, 729
LmnI GCTCC 1 cut(s) 760
MaeI CTAG 3 cut(s) 155, 371, 473
MaeII ACGT 2 cut(s) 354, 432
MaeIII GTNAC 6 cut(s) 47, 71, 82, 436, 716, 847
MalI GATC 4 cut(s) 208, 232, 601, 898
MboI GATC 4 cut(s) 206, 230, 599, 896
MboII GAAGA 8 cut(s) 155, 563, 598, 602, 641, 681, 689, 716
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 2 cut(s) 491, 639
MlyI GAGTC 2 cut(s) 342, 797
MmeI TCCRAC 1 cut(s) 405
MroXI GAANNNNTTC 2 cut(s) 176, 519
MseI TTAA 3 cut(s) 39, 642, 901
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 5 cut(s) 64, 341, 654, 710, 758
MspR9I CCNGG 3 cut(s) 342, 654, 702
Mva1269I GAATGC 2 cut(s) 742, 847
MvaI CCWGG 1 cut(s) 702
MvnI CGCG 4 cut(s) 113, 301, 579, 715
MwoI GCNNNNNNNGC 3 cut(s) 298, 719, 842
NciI CCSGG 2 cut(s) 342, 654
NdeII GATC 4 cut(s) 206, 230, 599, 896
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 82, 436
NruI TCGCGA 1 cut(s) 301
PciSI GCTCTTC 2 cut(s) 585, 729
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 2 cut(s) 742, 847
PdmI GAANNNNTTC 2 cut(s) 176, 519
PfoI TCCNGGA 2 cut(s) 652, 700
PkrI GCNGC 4 cut(s) 24, 115, 325, 835
PleI GAGTC 2 cut(s) 341, 797
PpsI GAGTC 2 cut(s) 341, 797
PsiI TTATAA 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 700
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 1 cut(s) 11
PsuI RGATCY 1 cut(s) 599
RruI TCGCGA 1 cut(s) 301
RsaI GTAC 3 cut(s) 420, 775, 791
RsaNI GTAC 3 cut(s) 419, 774, 790
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 597
SapI GCTCTTC 2 cut(s) 585, 729
SaqAI TTAA 3 cut(s) 39, 642, 901
SatI GCNGC 4 cut(s) 23, 114, 324, 834
Sau3AI GATC 4 cut(s) 206, 230, 599, 896
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 2 cut(s) 342, 797
ScrFI CCNGG 3 cut(s) 342, 654, 702
SduI GDGCHC 1 cut(s) 597
SetI ASST 9 cut(s) 89, 100, 154, 310, 357, 366, 435, 484, 597
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 2 cut(s) 491, 639
SsiI CCGC 9 cut(s) 20, 23, 43, 90, 113, 116, 216, 324, 834
SspMI CTAG 3 cut(s) 155, 371, 473
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 3 cut(s) 340, 652, 700
TaaI ACNGT 5 cut(s) 82, 427, 442, 745, 853
TaiI ACGT 2 cut(s) 357, 435
TaqI TCGA 6 cut(s) 205, 294, 445, 806, 890, 895
TasI AATT 2 cut(s) 491, 639
TauI GCSGC 4 cut(s) 25, 116, 326, 836
Tru1I TTAA 3 cut(s) 39, 642, 901
Tru9I TTAA 3 cut(s) 39, 642, 901
TseFI GTSAC 2 cut(s) 82, 436
Tsp45I GTSAC 2 cut(s) 82, 436
TspDTI ATGAA 3 cut(s) 306, 347, 557
TspGWI ACGGA 2 cut(s) 477, 791
XmnI GAANNNNTTC 2 cut(s) 176, 519
XspI CTAG 3 cut(s) 155, 371, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.