RchiOBHm_Chr1g0382901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014384
Physical Location & Seq
Reverse (-)
67490434 .. 67491661
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60584

Sequence Viewer

Length: 879 bp
ATGCCACCGCCGCAACAACCACCAATCAGTAACAGCCACGTCAACCTCCCCGAAACCCCCAACAAGCTCCCGATCGTACCCGATCTCCTCCTCTCCGCCCTCTCCGTCTTTTTCCTCTTCTCCTCCTCCTCCTCCTCCAAAATCACCCTCCTCCCCAAAACCCCACTCTTCAATTTCCCATCCTACCCTCGCCGATTCGTCAAAATCCCCACAATGTCGCTCCACCACCACCACCGCCACCGGGACTTCGCCACGCCGCAATCGCTCTCCGACTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAGAGCTCCCTAGCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCCAGCAAGAGTTATCGGACGGCAGCGTCAGGACCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATATCGGCGGCGAACCGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCGTTGTGAAGATTGTGCCCGGTTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGAGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGATGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATGCCGATTCCGGCGAGACAAGTGTTGCTCATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCGATAAACCATGAGCTCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

292

Amino Acids

32.29

Weight (kDa)

6.01

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 491
AccBSI CCGCTC 2 cut(s) 294, 661
AccII CGCG 1 cut(s) 286
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 241, 457, 507, 550
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 2 cut(s) 40, 418
AluBI AGCT 7 cut(s) 67, 361, 378, 580, 666, 703, 868
AluI AGCT 7 cut(s) 67, 361, 378, 580, 666, 703, 868
Alw21I GWGCWC 5 cut(s) 363, 380, 582, 668, 870
Alw26I GTCTC 1 cut(s) 782
Ama87I CYCGRG 3 cut(s) 356, 501, 581
AoxI GGCC 2 cut(s) 509, 564
ApeKI GCWGC 2 cut(s) 489, 703
Asp700I GAANNNNTTC 1 cut(s) 827
AspLEI GCGC 2 cut(s) 288, 443
AspS9I GGNCC 6 cut(s) 330, 408, 498, 510, 541, 564
AsuC2I CCSGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 3 cut(s) 356, 501, 581
AvaII GGWCC 4 cut(s) 330, 408, 498, 541
BaeGI GKGCMC 1 cut(s) 633
BanII GRGCYC 5 cut(s) 363, 380, 582, 668, 870
BauI CACGAG 1 cut(s) 310
Bbv12I GWGCWC 5 cut(s) 363, 380, 582, 668, 870
BbvI GCAGC 2 cut(s) 501, 690
BccI CCATC 1 cut(s) 187
BceAI ACGGC 3 cut(s) 502, 551, 628
BciVI GTATCC 1 cut(s) 687
BcnI CCSGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 444
BfuI GTATCC 1 cut(s) 687
BisI GCNGC 6 cut(s) 11, 257, 284, 490, 555, 704
BlsI GCNGC 6 cut(s) 12, 258, 285, 491, 556, 705
Bme1390I CCNGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
Bme18I GGWCC 4 cut(s) 330, 408, 498, 541
BmeT110I CYCGRG 3 cut(s) 356, 501, 581
BmgBI CACGTC 2 cut(s) 40, 418
BmgT120I GGNCC 6 cut(s) 330, 408, 498, 510, 541, 564
BmiI GGNNCC 4 cut(s) 331, 500, 512, 543
BmrFI CCNGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
BmsI GCATC 1 cut(s) 706
BplI GAGNNNNNCTC 2 cut(s) 650, 682
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
BsaJI CCNNGG 4 cut(s) 326, 501, 502, 680
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 755, 785
Bsc4I CCNNNNNNNGG 4 cut(s) 241, 457, 507, 550
Bse118I RCCGGY 2 cut(s) 400, 688
Bse1I ACTGG 1 cut(s) 278
BseDI CCNNGG 4 cut(s) 326, 501, 502, 680
BseGI GGATG 2 cut(s) 179, 721
BseLI CCNNNNNNNGG 4 cut(s) 241, 457, 507, 550
BseNI ACTGG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 2 cut(s) 501, 690
BseYI CCCAGC 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 511, 566
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 5 cut(s) 363, 380, 582, 668, 870
BsiHKCI CYCGRG 3 cut(s) 356, 501, 581
BslFI GGGAC 2 cut(s) 257, 343
BslI CCNNNNNNNGG 4 cut(s) 241, 457, 507, 550
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 2 cut(s) 257, 343
BsmI GAATGC 1 cut(s) 706
BsnI GGCC 2 cut(s) 511, 566
BsoBI CYCGRG 3 cut(s) 356, 501, 581
Bsp1286I GDGCHC 6 cut(s) 363, 380, 582, 633, 668, 870
Bsp143I GATC 2 cut(s) 72, 82
BspANI GGCC 2 cut(s) 511, 566
BspFNI CGCG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 4 cut(s) 331, 500, 512, 543
BspQI GCTCTTC 1 cut(s) 570
BsrBI CCGCTC 2 cut(s) 294, 661
BsrFI RCCGGY 2 cut(s) 400, 688
BsrI ACTGG 1 cut(s) 278
BssAI RCCGGY 2 cut(s) 400, 688
BssECI CCNNGG 4 cut(s) 326, 501, 502, 680
BssMI GATC 2 cut(s) 72, 82
BssSI CACGAG 1 cut(s) 310
Bst2BI CACGAG 1 cut(s) 310
Bst4CI ACNGT 3 cut(s) 412, 427, 724
Bst6I CTCTTC 3 cut(s) 122, 173, 570
BstC8I GCNNGC 3 cut(s) 306, 690, 734
BstF5I GGATG 2 cut(s) 179, 721
BstFNI CGCG 1 cut(s) 286
BstH2I RGCGCY 1 cut(s) 444
BstHHI GCGC 2 cut(s) 288, 443
BstKTI GATC 2 cut(s) 75, 85
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 2 cut(s) 72, 82
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 5 cut(s) 10, 262, 283, 563, 806
BstSCI CCNGG 9 cut(s) 240, 325, 450, 500, 501, 532, 561, 631, 679
BstSLI GKGCMC 1 cut(s) 633
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 501, 690
BsuI GTATCC 1 cut(s) 687
BsuRI GGCC 2 cut(s) 511, 566
BtrI CACGTC 2 cut(s) 40, 418
BtsCI GGATG 2 cut(s) 179, 721
Cac8I GCNNGC 3 cut(s) 306, 690, 734
CciI TCATGA 1 cut(s) 802
CfoI GCGC 2 cut(s) 288, 443
Cfr10I RCCGGY 2 cut(s) 400, 688
Cfr13I GGNCC 6 cut(s) 330, 408, 498, 510, 541, 564
Cfr9I CCCGGG 1 cut(s) 501
CpoI CGGWCCG 1 cut(s) 408
CseI GACGC 1 cut(s) 481
Csp6I GTAC 1 cut(s) 77
CspI CGGWCCG 1 cut(s) 408
CviAII CATG 3 cut(s) 767, 803, 863
CviQI GTAC 1 cut(s) 77
DpnI GATC 2 cut(s) 74, 84
DpnII GATC 2 cut(s) 72, 82
DrdI GACNNNNNNGTC 1 cut(s) 491
DseDI GACNNNNNNGTC 1 cut(s) 491
Eam1104I CTCTTC 3 cut(s) 122, 173, 570
EarI CTCTTC 3 cut(s) 122, 173, 570
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 5 cut(s) 361, 378, 580, 666, 868
Eco24I GRGCYC 5 cut(s) 363, 380, 582, 668, 870
Eco47I GGWCC 4 cut(s) 330, 408, 498, 541
Eco53kI GAGCTC 5 cut(s) 361, 378, 580, 666, 868
Eco88I CYCGRG 3 cut(s) 356, 501, 581
EcoICRI GAGCTC 5 cut(s) 361, 378, 580, 666, 868
EcoO109I RGGNCCY 3 cut(s) 498, 510, 541
EcoT38I GRGCYC 5 cut(s) 363, 380, 582, 668, 870
FaeI CATG 3 cut(s) 770, 806, 866
FaiI YATR 7 cut(s) 548, 642, 768, 774, 804, 864, 877
FaqI GGGAC 2 cut(s) 257, 343
FatI CATG 3 cut(s) 766, 802, 862
FauI CCCGC 1 cut(s) 405
Fnu4HI GCNGC 6 cut(s) 11, 257, 284, 490, 555, 704
FokI GGATG 2 cut(s) 166, 728
FriOI GRGCYC 5 cut(s) 363, 380, 582, 668, 870
Fsp4HI GCNGC 6 cut(s) 11, 257, 284, 490, 555, 704
FspBI CTAG 1 cut(s) 383
GlaI GCGC 2 cut(s) 287, 442
GluI GCNGC 6 cut(s) 11, 257, 284, 490, 555, 704
GsaI CCCAGC 1 cut(s) 472
HaeII RGCGCY 1 cut(s) 444
HaeIII GGCC 2 cut(s) 511, 566
HgaI GACGC 1 cut(s) 481
HhaI GCGC 2 cut(s) 288, 443
Hin1II CATG 3 cut(s) 770, 806, 866
Hin6I GCGC 2 cut(s) 286, 441
HinP1I GCGC 2 cut(s) 286, 441
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 6 cut(s) 195, 299, 389, 671, 779, 851
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 3 cut(s) 43, 343, 415
Hpy188I TCNGA 7 cut(s) 271, 298, 367, 408, 484, 520, 670
Hpy188III TCNNGA 8 cut(s) 70, 496, 608, 751, 803, 820, 832, 848
Hpy8I GTNNAC 3 cut(s) 43, 343, 415
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 2 cut(s) 362, 643
HpyCH4III ACNGT 3 cut(s) 412, 427, 724
HpyCH4IV ACGT 3 cut(s) 39, 339, 417
HpyCH4V TGCA 1 cut(s) 706
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 262, 283, 563, 806
HpySE526I ACGT 3 cut(s) 39, 339, 417
Hsp92II CATG 3 cut(s) 770, 806, 866
HspAI GCGC 2 cut(s) 286, 441
KroI GCCGGC 1 cut(s) 688
KroNI GCCGGC 1 cut(s) 690
Kzo9I GATC 2 cut(s) 72, 82
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 7 cut(s) 72, 225, 299, 383, 658, 663, 763
Lsp1109I GCAGC 2 cut(s) 501, 690
LweI GCATC 1 cut(s) 706
MaeI CTAG 1 cut(s) 383
MaeII ACGT 3 cut(s) 39, 339, 417
MaeIII GTNAC 4 cut(s) 29, 421, 695, 751
MalI GATC 2 cut(s) 74, 84
MbiI CCGCTC 2 cut(s) 294, 661
MboI GATC 2 cut(s) 72, 82
MboII GAAGA 5 cut(s) 109, 160, 535, 587, 634
MhlI GDGCHC 6 cut(s) 363, 380, 582, 633, 668, 870
MluCI AATT 2 cut(s) 172, 871
MlyI GAGTC 3 cut(s) 293, 383, 680
MmeI TCCRAC 4 cut(s) 294, 321, 498, 552
MroNI GCCGGC 1 cut(s) 688
MroXI GAANNNNTTC 1 cut(s) 827
MslI CAYNNNNRTG 1 cut(s) 771
MspR9I CCNGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
Mva1269I GAATGC 1 cut(s) 706
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 5 cut(s) 10, 262, 283, 563, 806
NaeI GCCGGC 1 cut(s) 690
NciI CCSGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
NdeII GATC 2 cut(s) 72, 82
NgoMIV GCCGGC 1 cut(s) 688
NlaIII CATG 3 cut(s) 770, 806, 866
NlaIV GGNNCC 4 cut(s) 331, 500, 512, 543
NmuCI GTSAC 2 cut(s) 421, 751
PaeR7I CTCGAG 1 cut(s) 356
PagI TCATGA 1 cut(s) 802
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 2 cut(s) 308, 363
PctI GAATGC 1 cut(s) 706
PdiI GCCGGC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 3 cut(s) 195, 779, 851
PkrI GCNGC 6 cut(s) 12, 258, 285, 491, 556, 705
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 3 cut(s) 293, 383, 679
PpsI GAGTC 3 cut(s) 293, 383, 679
PpuMI RGGWCCY 2 cut(s) 498, 541
Psp124BI GAGCTC 5 cut(s) 363, 380, 582, 668, 870
Psp5II RGGWCCY 2 cut(s) 498, 541
PspFI CCCAGC 1 cut(s) 468
PspN4I GGNNCC 4 cut(s) 331, 500, 512, 543
PspPI GGNCC 6 cut(s) 330, 408, 498, 510, 541, 564
PspPPI RGGWCCY 2 cut(s) 498, 541
PspXI VCTCGAGB 1 cut(s) 356
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 771
Rsr2I CGGWCCG 1 cut(s) 408
RsrII CGGWCCG 1 cut(s) 408
SacI GAGCTC 5 cut(s) 363, 380, 582, 668, 870
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 6 cut(s) 11, 257, 284, 490, 555, 704
Sau3AI GATC 2 cut(s) 72, 82
Sau96I GGNCC 6 cut(s) 330, 408, 498, 510, 541, 564
SchI GAGTC 3 cut(s) 293, 383, 680
ScrFI CCNGG 9 cut(s) 242, 327, 452, 502, 503, 534, 563, 633, 681
SduI GDGCHC 6 cut(s) 363, 380, 582, 633, 668, 870
SfaNI GCATC 1 cut(s) 706
Sfr274I CTCGAG 1 cut(s) 356
SinI GGWCC 4 cut(s) 330, 408, 498, 541
SlaI CTCGAG 1 cut(s) 356
SmaI CCCGGG 1 cut(s) 503
SmiMI CAYNNNNRTG 1 cut(s) 771
SmlI CTYRAG 2 cut(s) 278, 356
SmoI CTYRAG 2 cut(s) 278, 356
Sse9I AATT 2 cut(s) 172, 871
SspMI CTAG 1 cut(s) 383
SstI GAGCTC 5 cut(s) 363, 380, 582, 668, 870
StyD4I CCNGG 9 cut(s) 240, 325, 450, 500, 501, 532, 561, 631, 679
TaaI ACNGT 3 cut(s) 412, 427, 724
TaiI ACGT 3 cut(s) 42, 342, 420
TaqI TCGA 5 cut(s) 357, 392, 462, 587, 854
TasI AATT 2 cut(s) 172, 871
TauI GCSGC 4 cut(s) 13, 259, 286, 557
TfiI GAWTC 3 cut(s) 195, 779, 851
TseFI GTSAC 2 cut(s) 421, 751
TseI GCWGC 2 cut(s) 489, 703
Tsp45I GTSAC 2 cut(s) 421, 751
TspDTI ATGAA 2 cut(s) 542, 864
TspGWI ACGGA 2 cut(s) 94, 770
TspMI CCCGGG 1 cut(s) 501
VpaK11BI GGWCC 4 cut(s) 330, 408, 498, 541
XhoI CTCGAG 1 cut(s) 356
XmaI CCCGGG 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.