Rroxscaffold_4G00277790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014384
Physical Location & Seq
Forward (+)
1068523 .. 1071349
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277790.1

Sequence Viewer

Length: 870 bp
ATGCCACCGCCGCAACAACCACCAATCAGTAACAGCCACGTCAACCTCCCCGAAACCCCCAACAAGCTCCCGATCGTACCCGATCTCCTCCTCTCGGCCCTCTCCGTCTTTTTCCTCTTCTCCTCCTCCTCCTCCAAAATCACCCTCCTCCCCAAAACCCCACTCTTTAATTTCCCATCCTACCCTCGCCGATTCGTCAAAATCCCCACAATGTCGCTCCACCACCACCACCGGAACTTCGCCACGCCGCAATCGCTCTCCGATTGGCTCAAGCCGCGCCTCCGCTCAGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTCCCTATCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCGAGCAAGAGTTATCGGACGGCAGCGTCAGGAGCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATTTCGGCGGCGAACCGGGCGGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCATTGTGAAGATTGTACCCGGTTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGATGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATTCCGATTCCGGCGAGAGAAGTGTTGCTTATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCGATAAACCATGAGCTCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

289

Amino Acids

31.96

Weight (kDa)

6.01

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AccBSI CCGCTC 2 cut(s) 285, 652
AccII CGCG 1 cut(s) 277
AciI CCGC 9 cut(s) 8, 11, 248, 275, 283, 389, 545, 557, 652
AcyI GRCGYC 1 cut(s) 662
AfaI GTAC 2 cut(s) 78, 621
AfiI CCNNNNNNNGG 3 cut(s) 94, 448, 541
AjiI CACGTC 2 cut(s) 40, 409
AluBI AGCT 7 cut(s) 67, 352, 369, 571, 657, 694, 859
AluI AGCT 7 cut(s) 67, 352, 369, 571, 657, 694, 859
Alw21I GWGCWC 4 cut(s) 354, 573, 659, 861
Ama87I CYCGRG 2 cut(s) 347, 572
AoxI GGCC 2 cut(s) 96, 500
ApeKI GCWGC 2 cut(s) 480, 694
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 2 cut(s) 279, 434
AspS9I GGNCC 5 cut(s) 97, 321, 399, 501, 532
AsuC2I CCSGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 2 cut(s) 347, 572
AvaII GGWCC 3 cut(s) 321, 399, 532
BanII GRGCYC 4 cut(s) 354, 573, 659, 861
BauI CACGAG 1 cut(s) 301
Bbv12I GWGCWC 4 cut(s) 354, 573, 659, 861
BbvI GCAGC 2 cut(s) 492, 681
BccI CCATC 1 cut(s) 184
BceAI ACGGC 2 cut(s) 493, 619
BciVI GTATCC 1 cut(s) 678
BcnI CCSGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
BfoI RGCGCY 1 cut(s) 435
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
BlsI GCNGC 6 cut(s) 12, 249, 276, 482, 547, 696
Bme1390I CCNGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
Bme18I GGWCC 3 cut(s) 321, 399, 532
BmeT110I CYCGRG 2 cut(s) 347, 572
BmgBI CACGTC 2 cut(s) 40, 409
BmgT120I GGNCC 5 cut(s) 97, 321, 399, 501, 532
BmiI GGNNCC 4 cut(s) 322, 491, 503, 534
BmrFI CCNGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
BmsI GCATC 1 cut(s) 697
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
BsaHI GRCGYC 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 317, 493, 671
BsaWI WCCGGW 1 cut(s) 231
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 746, 776
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 448, 541
Bse118I RCCGGY 2 cut(s) 391, 679
BseDI CCNNGG 3 cut(s) 317, 493, 671
BseGI GGATG 2 cut(s) 176, 712
BseLI CCNNNNNNNGG 3 cut(s) 94, 448, 541
BseMII CTCAG 1 cut(s) 300
BseXI GCAGC 2 cut(s) 492, 681
Bsh1236I CGCG 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 98, 502
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 4 cut(s) 354, 573, 659, 861
BsiHKCI CYCGRG 2 cut(s) 347, 572
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 3 cut(s) 94, 448, 541
BsmFI GGGAC 1 cut(s) 334
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 2 cut(s) 98, 502
BsoBI CYCGRG 2 cut(s) 347, 572
Bsp1286I GDGCHC 4 cut(s) 354, 573, 659, 861
Bsp143I GATC 2 cut(s) 72, 82
BspACI CCGC 9 cut(s) 8, 11, 248, 275, 283, 389, 545, 557, 652
BspANI GGCC 2 cut(s) 98, 502
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 4 cut(s) 322, 491, 503, 534
BspQI GCTCTTC 1 cut(s) 561
BsrBI CCGCTC 2 cut(s) 285, 652
BsrFI RCCGGY 2 cut(s) 391, 679
BssAI RCCGGY 2 cut(s) 391, 679
BssECI CCNNGG 3 cut(s) 317, 493, 671
BssMI GATC 2 cut(s) 72, 82
BssNI GRCGYC 1 cut(s) 662
BssSI CACGAG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 301
Bst4CI ACNGT 3 cut(s) 403, 418, 715
Bst6I CTCTTC 2 cut(s) 122, 561
BstACI GRCGYC 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 297, 681, 725
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 176, 712
BstFNI CGCG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 279, 434
BstKTI GATC 2 cut(s) 75, 85
BstMBI GATC 2 cut(s) 72, 82
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 6 cut(s) 10, 253, 274, 489, 554, 797
BstSCI CCNGG 7 cut(s) 316, 441, 492, 523, 552, 622, 670
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 492, 681
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 98, 502
BtrI CACGTC 2 cut(s) 40, 409
BtsCI GGATG 2 cut(s) 176, 712
Cac8I GCNNGC 3 cut(s) 297, 681, 725
CfoI GCGC 2 cut(s) 279, 434
Cfr10I RCCGGY 2 cut(s) 391, 679
Cfr13I GGNCC 5 cut(s) 97, 321, 399, 501, 532
CpoI CGGWCCG 1 cut(s) 399
CseI GACGC 2 cut(s) 472, 651
Csp6I GTAC 2 cut(s) 77, 620
CspI CGGWCCG 1 cut(s) 399
CviAII CATG 2 cut(s) 758, 854
CviQI GTAC 2 cut(s) 77, 620
DdeI CTNAG 1 cut(s) 286
DpnI GATC 2 cut(s) 74, 84
DpnII GATC 2 cut(s) 72, 82
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
Eam1104I CTCTTC 2 cut(s) 122, 561
EarI CTCTTC 2 cut(s) 122, 561
Ecl136II GAGCTC 4 cut(s) 352, 571, 657, 859
Eco24I GRGCYC 4 cut(s) 354, 573, 659, 861
Eco47I GGWCC 3 cut(s) 321, 399, 532
Eco53kI GAGCTC 4 cut(s) 352, 571, 657, 859
Eco88I CYCGRG 2 cut(s) 347, 572
EcoICRI GAGCTC 4 cut(s) 352, 571, 657, 859
EcoO109I RGGNCCY 2 cut(s) 501, 532
EcoT38I GRGCYC 4 cut(s) 354, 573, 659, 861
FaeI CATG 2 cut(s) 761, 857
FaiI YATR 5 cut(s) 633, 759, 795, 855, 868
FalI AAGNNNNNCTT 2 cut(s) 775, 807
FaqI GGGAC 1 cut(s) 334
FatI CATG 2 cut(s) 757, 853
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
FokI GGATG 2 cut(s) 163, 719
FriOI GRGCYC 4 cut(s) 354, 573, 659, 861
Fsp4HI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
GlaI GCGC 2 cut(s) 278, 433
GluI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 2 cut(s) 98, 502
HgaI GACGC 2 cut(s) 472, 651
HhaI GCGC 2 cut(s) 279, 434
Hin1I GRCGYC 1 cut(s) 662
Hin1II CATG 2 cut(s) 761, 857
Hin6I GCGC 2 cut(s) 277, 432
HinP1I GCGC 2 cut(s) 277, 432
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 192, 290, 380, 770, 842
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 43, 334, 406
Hpy188I TCNGA 8 cut(s) 262, 289, 358, 379, 399, 475, 511, 769
Hpy188III TCNNGA 7 cut(s) 70, 487, 599, 742, 811, 823, 839
Hpy8I GTNNAC 3 cut(s) 43, 334, 406
Hpy99I CGWCG 2 cut(s) 413, 667
HpyAV CCTTC 2 cut(s) 353, 634
HpyCH4III ACNGT 3 cut(s) 403, 418, 715
HpyCH4IV ACGT 3 cut(s) 39, 330, 408
HpyCH4V TGCA 1 cut(s) 697
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 253, 274, 489, 554, 797
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 3 cut(s) 39, 330, 408
Hsp92I GRCGYC 1 cut(s) 662
Hsp92II CATG 2 cut(s) 761, 857
HspAI GCGC 2 cut(s) 277, 432
KroI GCCGGC 1 cut(s) 679
KroNI GCCGGC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 72, 82
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 7 cut(s) 72, 222, 374, 489, 649, 654, 754
Lsp1109I GCAGC 2 cut(s) 492, 681
LweI GCATC 1 cut(s) 697
MaeII ACGT 3 cut(s) 39, 330, 408
MaeIII GTNAC 4 cut(s) 29, 412, 686, 742
MalI GATC 2 cut(s) 74, 84
MbiI CCGCTC 2 cut(s) 285, 652
MboI GATC 2 cut(s) 72, 82
MboII GAAGA 4 cut(s) 109, 526, 578, 625
MhlI GDGCHC 4 cut(s) 354, 573, 659, 861
MluCI AATT 2 cut(s) 169, 862
MlyI GAGTC 2 cut(s) 284, 374
MmeI TCCRAC 3 cut(s) 402, 489, 543
MroNI GCCGGC 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 1 cut(s) 168
MspR9I CCNGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
Mva1269I GAATGC 1 cut(s) 697
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 6 cut(s) 10, 253, 274, 489, 554, 797
NaeI GCCGGC 1 cut(s) 681
NciI CCSGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
NdeII GATC 2 cut(s) 72, 82
NgoMIV GCCGGC 1 cut(s) 679
NlaIII CATG 2 cut(s) 761, 857
NlaIV GGNNCC 4 cut(s) 322, 491, 503, 534
NmeAIII GCCGAG 3 cut(s) 74, 484, 638
NmuCI GTSAC 2 cut(s) 412, 742
PaeR7I CTCGAG 1 cut(s) 347
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 354
PctI GAATGC 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 3 cut(s) 192, 770, 842
PkrI GCNGC 6 cut(s) 12, 249, 276, 482, 547, 696
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 284, 374
PpsI GAGTC 2 cut(s) 284, 374
PpuMI RGGWCCY 1 cut(s) 532
Psp124BI GAGCTC 4 cut(s) 354, 573, 659, 861
Psp5II RGGWCCY 1 cut(s) 532
PspN4I GGNNCC 4 cut(s) 322, 491, 503, 534
PspPI GGNCC 5 cut(s) 97, 321, 399, 501, 532
PspPPI RGGWCCY 1 cut(s) 532
PspXI VCTCGAGB 1 cut(s) 347
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 2 cut(s) 78, 621
RsaNI GTAC 2 cut(s) 77, 620
Rsr2I CGGWCCG 1 cut(s) 399
RsrII CGGWCCG 1 cut(s) 399
SacI GAGCTC 4 cut(s) 354, 573, 659, 861
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
Sau3AI GATC 2 cut(s) 72, 82
Sau96I GGNCC 5 cut(s) 97, 321, 399, 501, 532
SchI GAGTC 2 cut(s) 284, 374
ScrFI CCNGG 7 cut(s) 318, 443, 494, 525, 554, 624, 672
SduI GDGCHC 4 cut(s) 354, 573, 659, 861
SfaNI GCATC 1 cut(s) 697
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 3 cut(s) 321, 399, 532
SlaI CTCGAG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 269, 347
SmoI CTYRAG 2 cut(s) 269, 347
Sse9I AATT 2 cut(s) 169, 862
SsiI CCGC 9 cut(s) 8, 11, 248, 275, 283, 389, 545, 557, 652
SstI GAGCTC 4 cut(s) 354, 573, 659, 861
StyD4I CCNGG 7 cut(s) 316, 441, 492, 523, 552, 622, 670
TaaI ACNGT 3 cut(s) 403, 418, 715
TaiI ACGT 3 cut(s) 42, 333, 411
TaqI TCGA 5 cut(s) 348, 383, 453, 578, 845
TasI AATT 2 cut(s) 169, 862
TauI GCSGC 4 cut(s) 13, 250, 277, 548
TfiI GAWTC 3 cut(s) 192, 770, 842
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 2 cut(s) 412, 742
TseI GCWGC 2 cut(s) 480, 694
Tsp45I GTSAC 2 cut(s) 412, 742
TspDTI ATGAA 2 cut(s) 533, 855
TspGWI ACGGA 2 cut(s) 94, 761
VpaK11BI GGWCC 3 cut(s) 321, 399, 532
XhoI CTCGAG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.