Prupe.2G319100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014384
Physical Location & Seq
Reverse (-)
29802071 .. 29802922
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G319100.1

Sequence Viewer

Length: 852 bp
ATGCCACCGCCGCCGATCAGAAACAACCACACCAACCTTCTCCAAAACCCCAACAACAACCTCCCAACCCTACGCGATCTCCTCCTCACGGCCCTCTCCTTCTGTTTCCTCTTCTCTTCCTCCACCACCAGAGCTACCCTCTTCTCCAAAACCCCATTTCTTCATTTCCCTTCCTCCCCTCGCCGCTTTCTCAAAATCCCCATCATGTCCCTCCACCACTTCTCCACCCCACAGTCCCTCTCCGACTGGCTCAAGCCGCGCCTGCTCTCCGACTCTCTGGCCTCCTGGGGGGTCAAGCCCGGCACCAAAAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTCTCTAGCCGACTCAACCCCTCCGGTTCGAACTGTTCACGTCGTCAAGGTACGGATCATCGACGATAAATTCCGGGTCTTGATCGAAGCCCACCAAGAATTATCGGACGGTAGCGTCCGAAGCCGAGGCCGGCCCTTGTCGGAGAAAATGAAACCCGGCGAGGACCCCGAATCGGCCGCTAACCGGGCGGTTATGGAAGAGCTCGGTTCGATTTTAGAAGGGTCGGTGAAAGATTCGGGACATAGTGGCATTCTAAAAATTGTTCCGGGTTCGTATGAGAAGAAGGTGGAGGAGCGTCATTCGGCGTCGTATCCGGGCTTACCGGCATGCTACGTTTTGCATTCGGTGGATGCTTGGTTGGATGGTTTACCAGAAGGAGAGTTTTGCACTGAGGAGGAGCATGAGTATGCGAATTGCGGAGAGATGAGTATTGCTCACGAGGCTGTGTCTGTCAAGAAGCATTTTTGGAAATGGGTTAGTCTTGATTCAGTAAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

284

Amino Acids

31.6

Weight (kDa)

6.5

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 302
AccII CGCG 2 cut(s) 75, 259
AciI CCGC 7 cut(s) 8, 11, 184, 257, 528, 539, 768
AclWI GGATC 1 cut(s) 413
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 656
AfaI GTAC 1 cut(s) 402
AfiI CCNNNNNNNGG 4 cut(s) 88, 288, 523, 534
AjiI CACGTC 1 cut(s) 391
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 4 cut(s) 134, 334, 351, 553
AluI AGCT 4 cut(s) 134, 334, 351, 553
Alw21I GWGCWC 2 cut(s) 336, 555
AlwI GGATC 1 cut(s) 413
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 5 cut(s) 90, 279, 478, 482, 525
ApoI RAATTY 1 cut(s) 419
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 3 cut(s) 91, 483, 514
AsuC2I CCSGG 6 cut(s) 300, 425, 507, 536, 618, 666
AsuHPI GGTGA 1 cut(s) 589
AsuII TTCGAA 1 cut(s) 379
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 336, 555
BauI CACGAG 1 cut(s) 788
Bbv12I GWGCWC 2 cut(s) 336, 555
BccI CCATC 2 cut(s) 209, 707
BceAI ACGGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 672
BcnI CCSGG 6 cut(s) 300, 425, 507, 536, 618, 666
BfaI CTAG 1 cut(s) 356
BfuI GTATCC 1 cut(s) 672
BglII AGATCT 1 cut(s) 845
BisI GCNGC 4 cut(s) 11, 184, 257, 528
BlsI GCNGC 4 cut(s) 12, 185, 258, 529
Bme1390I CCNGG 7 cut(s) 286, 300, 425, 507, 536, 618, 666
Bme18I GGWCC 1 cut(s) 514
BmeT110I CYCGRG 1 cut(s) 329
BmgBI CACGTC 1 cut(s) 391
BmgT120I GGNCC 3 cut(s) 91, 483, 514
BmiI GGNNCC 2 cut(s) 304, 516
BmrFI CCNGG 7 cut(s) 286, 300, 425, 507, 536, 618, 666
BmsI GCATC 1 cut(s) 691
BplI GAGNNNNNCTC 4 cut(s) 123, 155, 769, 801
Bpu14I TTCGAA 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 6 cut(s) 300, 425, 507, 536, 618, 666
BsaHI GRCGYC 1 cut(s) 656
BsaJI CCNNGG 2 cut(s) 285, 475
BsaWI WCCGGW 1 cut(s) 373
BsaXI ACNNNNNCTCC 6 cut(s) 63, 93, 206, 236, 740, 770
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 288, 523, 534
Bse118I RCCGGY 2 cut(s) 480, 673
Bse1I ACTGG 1 cut(s) 251
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 285, 475
BseGI GGATG 2 cut(s) 706, 718
BseLI CCNNNNNNNGG 4 cut(s) 88, 288, 523, 534
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 1 cut(s) 251
BseRI GAGGAG 5 cut(s) 71, 74, 656, 758, 761
BseX3I CGGCCG 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 75, 259
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 5 cut(s) 92, 281, 480, 484, 527
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 2 cut(s) 336, 555
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 9 cut(s) 300, 374, 424, 481, 507, 535, 617, 665, 674
BslFI GGGAC 3 cut(s) 193, 220, 603
BslI CCNNNNNNNGG 4 cut(s) 88, 288, 523, 534
BsmFI GGGAC 3 cut(s) 193, 220, 603
BsmI GAATGC 2 cut(s) 600, 691
BsnI GGCC 5 cut(s) 92, 281, 480, 484, 527
BsoBI CYCGRG 1 cut(s) 329
Bsp119I TTCGAA 1 cut(s) 379
Bsp1286I GDGCHC 2 cut(s) 336, 555
Bsp143I GATC 5 cut(s) 15, 76, 405, 432, 845
BspACI CCGC 7 cut(s) 8, 11, 184, 257, 528, 539, 768
BspANI GGCC 5 cut(s) 92, 281, 480, 484, 527
BspCNI CTCAG 1 cut(s) 733
BspFNI CGCG 2 cut(s) 75, 259
BspLI GGNNCC 2 cut(s) 304, 516
BspPI GGATC 1 cut(s) 413
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 302
BsrFI RCCGGY 2 cut(s) 480, 673
BsrI ACTGG 1 cut(s) 251
BssAI RCCGGY 2 cut(s) 480, 673
BssECI CCNNGG 2 cut(s) 285, 475
BssMI GATC 5 cut(s) 15, 76, 405, 432, 845
BssNI GRCGYC 1 cut(s) 656
BssSI CACGAG 1 cut(s) 788
Bst2BI CACGAG 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 234, 385, 461
Bst6I CTCTTC 4 cut(s) 116, 121, 146, 543
BstACI GRCGYC 1 cut(s) 656
BstBI TTCGAA 1 cut(s) 379
BstC8I GCNNGC 3 cut(s) 263, 482, 679
BstDEI CTNAG 1 cut(s) 741
BstF5I GGATG 2 cut(s) 706, 718
BstFNI CGCG 2 cut(s) 75, 259
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 5 cut(s) 18, 79, 408, 435, 848
BstMBI GATC 5 cut(s) 15, 76, 405, 432, 845
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 6 cut(s) 10, 256, 262, 471, 536, 791
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 7 cut(s) 284, 298, 423, 505, 534, 616, 664
BstUI CGCG 2 cut(s) 75, 259
BstX2I RGATCY 1 cut(s) 845
BstYI RGATCY 1 cut(s) 845
BstZI CGGCCG 1 cut(s) 525
BsuI GTATCC 1 cut(s) 672
BsuRI GGCC 5 cut(s) 92, 281, 480, 484, 527
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 2 cut(s) 706, 718
BtsIMutI CAGTG 1 cut(s) 738
Cac8I GCNNGC 3 cut(s) 263, 482, 679
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 2 cut(s) 480, 673
Cfr13I GGNCC 3 cut(s) 91, 483, 514
CseI GACGC 3 cut(s) 454, 635, 645
Csp6I GTAC 1 cut(s) 401
CviAII CATG 3 cut(s) 205, 678, 752
CviQI GTAC 1 cut(s) 401
DdeI CTNAG 1 cut(s) 741
DpnI GATC 5 cut(s) 17, 78, 407, 434, 847
DpnII GATC 5 cut(s) 15, 76, 405, 432, 845
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 525
EagI CGGCCG 1 cut(s) 525
Eam1104I CTCTTC 4 cut(s) 116, 121, 146, 543
EarI CTCTTC 4 cut(s) 116, 121, 146, 543
Ecl136II GAGCTC 2 cut(s) 334, 553
EclXI CGGCCG 1 cut(s) 525
Eco24I GRGCYC 2 cut(s) 336, 555
Eco47I GGWCC 1 cut(s) 514
Eco52I CGGCCG 1 cut(s) 525
Eco53kI GAGCTC 2 cut(s) 334, 553
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 2 cut(s) 334, 553
EcoO109I RGGNCCY 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 284
EcoT38I GRGCYC 2 cut(s) 336, 555
FaeI CATG 3 cut(s) 208, 681, 755
FaiI YATR 7 cut(s) 206, 545, 594, 627, 679, 753, 759
FaqI GGGAC 3 cut(s) 193, 220, 603
FatI CATG 3 cut(s) 204, 677, 751
Fnu4HI GCNGC 4 cut(s) 11, 184, 257, 528
FokI GGATG 2 cut(s) 713, 725
FriOI GRGCYC 2 cut(s) 336, 555
FseI GGCCGGCC 1 cut(s) 484
Fsp4HI GCNGC 4 cut(s) 11, 184, 257, 528
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 260
GluI GCNGC 4 cut(s) 11, 184, 257, 528
HaeIII GGCC 5 cut(s) 92, 281, 480, 484, 527
HapII CCGG 9 cut(s) 300, 374, 424, 481, 507, 535, 617, 665, 674
HgaI GACGC 3 cut(s) 454, 635, 645
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 1 cut(s) 656
Hin1II CATG 3 cut(s) 208, 681, 755
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HinfI GANTC 5 cut(s) 272, 362, 521, 584, 836
HpaII CCGG 9 cut(s) 300, 374, 424, 481, 507, 535, 617, 665, 674
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 3 cut(s) 316, 388, 719
Hpy188I TCNGA 7 cut(s) 20, 244, 271, 340, 457, 470, 493
Hpy188III TCNNGA 6 cut(s) 430, 588, 788, 805, 833, 849
Hpy8I GTNNAC 3 cut(s) 316, 388, 719
Hpy99I CGWCG 3 cut(s) 395, 416, 661
HpyAV CCTTC 7 cut(s) 47, 109, 180, 335, 563, 628, 719
HpyCH4III ACNGT 3 cut(s) 234, 385, 461
HpyCH4IV ACGT 3 cut(s) 312, 390, 684
HpyCH4V TGCA 2 cut(s) 691, 738
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 256, 262, 471, 536, 791
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 3 cut(s) 312, 390, 684
Hsp92I GRCGYC 1 cut(s) 656
Hsp92II CATG 3 cut(s) 208, 681, 755
HspAI GCGC 1 cut(s) 259
KroI GCCGGC 1 cut(s) 480
KroNI GCCGGC 1 cut(s) 482
Kzo9I GATC 5 cut(s) 15, 76, 405, 432, 845
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 2 cut(s) 643, 748
LweI GCATC 1 cut(s) 691
MaeI CTAG 1 cut(s) 356
MaeII ACGT 3 cut(s) 312, 390, 684
MalI GATC 5 cut(s) 17, 78, 407, 434, 847
MboI GATC 5 cut(s) 15, 76, 405, 432, 845
MboII GAAGA 6 cut(s) 103, 108, 133, 152, 560, 643
MflI RGATCY 1 cut(s) 845
MhlI GDGCHC 2 cut(s) 336, 555
MluCI AATT 4 cut(s) 419, 449, 609, 763
MlyI GAGTC 2 cut(s) 266, 356
MmeI TCCRAC 4 cut(s) 267, 294, 471, 690
MroNI GCCGGC 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 756
MspI CCGG 9 cut(s) 300, 374, 424, 481, 507, 535, 617, 665, 674
MspR9I CCNGG 7 cut(s) 286, 300, 425, 507, 536, 618, 666
Mva1269I GAATGC 2 cut(s) 600, 691
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 2 cut(s) 75, 259
MwoI GCNNNNNNNGC 6 cut(s) 10, 256, 262, 471, 536, 791
NaeI GCCGGC 1 cut(s) 482
NciI CCSGG 6 cut(s) 300, 425, 507, 536, 618, 666
NdeII GATC 5 cut(s) 15, 76, 405, 432, 845
NgoMIV GCCGGC 1 cut(s) 480
NlaIII CATG 3 cut(s) 208, 681, 755
NlaIV GGNNCC 2 cut(s) 304, 516
NmeAIII GCCGAG 1 cut(s) 500
NspI RCATGY 1 cut(s) 681
NspV TTCGAA 1 cut(s) 379
PaeI GCATGC 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PctI GAATGC 2 cut(s) 600, 691
PdiI GCCGGC 1 cut(s) 482
PfeI GAWTC 3 cut(s) 521, 584, 836
PkrI GCNGC 4 cut(s) 12, 185, 258, 529
PleI GAGTC 2 cut(s) 266, 356
PpsI GAGTC 2 cut(s) 266, 356
PpuMI RGGWCCY 1 cut(s) 514
Psp124BI GAGCTC 2 cut(s) 336, 555
Psp5II RGGWCCY 1 cut(s) 514
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 304, 516
PspPI GGNCC 3 cut(s) 91, 483, 514
PspPPI RGGWCCY 1 cut(s) 514
PspXI VCTCGAGB 1 cut(s) 329
PsuI RGATCY 1 cut(s) 845
RigI GGCCGGCC 1 cut(s) 484
RsaI GTAC 1 cut(s) 402
RsaNI GTAC 1 cut(s) 401
RseI CAYNNNNRTG 1 cut(s) 756
SacI GAGCTC 2 cut(s) 336, 555
SapI GCTCTTC 1 cut(s) 543
SatI GCNGC 4 cut(s) 11, 184, 257, 528
Sau3AI GATC 5 cut(s) 15, 76, 405, 432, 845
Sau96I GGNCC 3 cut(s) 91, 483, 514
SchI GAGTC 2 cut(s) 266, 356
ScrFI CCNGG 7 cut(s) 286, 300, 425, 507, 536, 618, 666
SduI GDGCHC 2 cut(s) 336, 555
SfaNI GCATC 1 cut(s) 691
Sfr274I CTCGAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 379
SinI GGWCC 1 cut(s) 514
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 251, 329
SmoI CTYRAG 2 cut(s) 251, 329
SphI GCATGC 1 cut(s) 681
Sse9I AATT 4 cut(s) 419, 449, 609, 763
SsiI CCGC 7 cut(s) 8, 11, 184, 257, 528, 539, 768
SspMI CTAG 1 cut(s) 356
SstI GAGCTC 2 cut(s) 336, 555
StyD4I CCNGG 7 cut(s) 284, 298, 423, 505, 534, 616, 664
TaaI ACNGT 3 cut(s) 234, 385, 461
TaiI ACGT 3 cut(s) 315, 393, 687
TaqI TCGA 5 cut(s) 330, 379, 411, 435, 560
TasI AATT 4 cut(s) 419, 449, 609, 763
TauI GCSGC 4 cut(s) 13, 186, 259, 530
TfiI GAWTC 3 cut(s) 521, 584, 836
TscAI CASTG 1 cut(s) 745
TspDTI ATGAA 2 cut(s) 152, 515
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 681
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.