pycom01g23660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0014384
Physical Location & Seq
Reverse (-)
20904843 .. 20907501
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23660.2

Sequence Viewer

Length: 822 bp
ATGTCGCCGCAAGAAGTAGTCAGCAACAACCTCCAAACGCTACCCGATCTCCTCCTGACGGGGTTCTCCATCTGCTTCCTCTTCTCCTTCTCCGCCCGAGCTACCCTCTTCTCCAAAACCCCATTTCTCCATTTTCCTTCCTACCCTCGGCGCCTATTCAAAATCCCCACCATGTCCCTCCGCCAGCAGCAGCAGCGCTTCCCCACCCCACAGTCCCTCTCCGAGTGGCTCAAGCCTCGATTGCTCTCCGATTCTCTGGTCTCTTGGGGGGTCAAGCCCGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTCTTTAGCCAATTCATCCCCTCCGGTTCGAACGGTTCAGGTTGTGACGGTACGGATCATCGACAATAAATCCCGGGTTTTGGTGGAATCCCACCAAGAATTATCGGATGGCAGCGTCAGGAGCCGAGGCCGGCCATTGTCAGAGAAAATGAAGCCGGGAGAGGACCACGAATCTGCGGCGAACCGGGCGGTTATGGAAGAGCTCGGTTCAATATTGAATTCGGAAAGCAGCGGAATTGTGAAGATTGTTCCAGGTTCTTATGAGAAGAGGGTGGAGGAGCGGCATTCGATGTCGTACCCGGGGTTGCCGGCGTGTTATGTGCTGCACTCGGTGGATGCTTGGGTGAAGGGCTTGCCGGAAGGTGAGTTTTGCACCGAGGAGGAGCACGAGTATTCGGATGGCGGTGCGATGAGCATTGCTCACGAGGCTGTGTACGTCAAGAAGCATTTTTGGAAATGGGTTGGAGACGCAAGCTATCTTTCGTATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

274

Amino Acids

30.74

Weight (kDa)

6.76

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccBSI CCGCTC 1 cut(s) 610
AciI CCGC 8 cut(s) 8, 93, 181, 506, 518, 561, 610, 732
AclWI GGATC 1 cut(s) 392
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 1 cut(s) 547
AcyI GRCGYC 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 661
AfaI GTAC 3 cut(s) 381, 626, 764
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 58, 147, 409
AgsI TTSAA 3 cut(s) 160, 540, 547
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 5 cut(s) 101, 313, 330, 532, 804
AluI AGCT 5 cut(s) 101, 313, 330, 532, 804
Alw21I GWGCWC 3 cut(s) 315, 534, 717
Alw26I GTCTC 2 cut(s) 265, 789
AlwI GGATC 1 cut(s) 392
Ama87I CYCGRG 5 cut(s) 96, 278, 308, 402, 628
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 2 cut(s) 457, 461
ApeKI GCWGC 6 cut(s) 187, 190, 193, 441, 558, 652
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 2 cut(s) 153, 198
AspS9I GGNCC 2 cut(s) 282, 493
AsuC2I CCSGG 8 cut(s) 279, 280, 403, 404, 486, 515, 629, 630
AsuHPI GGTGA 2 cut(s) 685, 704
AsuII TTCGAA 1 cut(s) 358
AvaI CYCGRG 5 cut(s) 96, 278, 308, 402, 628
AvaII GGWCC 2 cut(s) 282, 493
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 2 cut(s) 315, 534
BauI CACGAG 2 cut(s) 716, 752
Bbv12I GWGCWC 3 cut(s) 315, 534, 717
BbvI GCAGC 6 cut(s) 199, 202, 205, 453, 570, 639
BccI CCATC 3 cut(s) 77, 431, 722
BciT130I CCWGG 1 cut(s) 582
BcnI CCSGG 8 cut(s) 279, 280, 403, 404, 486, 515, 629, 630
BcoDI GTCTC 2 cut(s) 265, 789
BfoI RGCGCY 2 cut(s) 154, 199
BisI GCNGC 9 cut(s) 8, 188, 191, 194, 442, 507, 559, 611, 653
BlsI GCNGC 9 cut(s) 9, 189, 192, 195, 443, 508, 560, 612, 654
Bme1390I CCNGG 9 cut(s) 279, 280, 403, 404, 486, 515, 582, 629, 630
Bme18I GGWCC 2 cut(s) 282, 493
BmeT110I CYCGRG 5 cut(s) 96, 278, 308, 402, 628
BmgT120I GGNCC 2 cut(s) 282, 493
BmiI GGNNCC 3 cut(s) 152, 283, 452
BmrFI CCNGG 9 cut(s) 279, 280, 403, 404, 486, 515, 582, 629, 630
BmsI GCATC 1 cut(s) 655
BplI GAGNNNNNCTC 4 cut(s) 90, 122, 733, 765
Bpu14I TTCGAA 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 8 cut(s) 279, 280, 403, 404, 486, 515, 629, 630
BsaHI GRCGYC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 7 cut(s) 146, 278, 402, 454, 628, 629, 705
BsaWI WCCGGW 1 cut(s) 352
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 704, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 147, 409
Bse118I RCCGGY 2 cut(s) 459, 637
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 7 cut(s) 146, 278, 402, 454, 628, 629, 705
BseGI GGATG 4 cut(s) 344, 442, 670, 733
BseLI CCNNNNNNNGG 3 cut(s) 58, 147, 409
BseMI GCAATG 1 cut(s) 744
BseRI GAGGAG 4 cut(s) 41, 620, 722, 725
BseXI GCAGC 6 cut(s) 199, 202, 205, 453, 570, 639
BsgI GTGCAG 1 cut(s) 638
BshFI GGCC 2 cut(s) 459, 463
BshNI GGYRCC 1 cut(s) 150
BsiHKAI GWGCWC 3 cut(s) 315, 534, 717
BsiHKCI CYCGRG 5 cut(s) 96, 278, 308, 402, 628
BsiSI CCGG 9 cut(s) 279, 353, 403, 460, 485, 514, 629, 638, 686
BslFI GGGAC 3 cut(s) 160, 199, 295
BslI CCNNNNNNNGG 3 cut(s) 58, 147, 409
BsmAI GTCTC 2 cut(s) 265, 789
BsmBI CGTCTC 1 cut(s) 789
BsmFI GGGAC 3 cut(s) 160, 199, 295
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 2 cut(s) 459, 463
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 5 cut(s) 96, 278, 308, 402, 628
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 315, 534, 717
Bsp143I GATC 2 cut(s) 46, 384
BspACI CCGC 8 cut(s) 8, 93, 181, 506, 518, 561, 610, 732
BspANI GGCC 2 cut(s) 459, 463
BspLI GGNNCC 3 cut(s) 152, 283, 452
BspPI GGATC 1 cut(s) 392
BspQI GCTCTTC 1 cut(s) 522
BspT104I TTCGAA 1 cut(s) 358
BspT107I GGYRCC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 265
BsrBI CCGCTC 1 cut(s) 610
BsrDI GCAATG 1 cut(s) 744
BsrFI RCCGGY 2 cut(s) 459, 637
BssAI RCCGGY 2 cut(s) 459, 637
BssECI CCNNGG 7 cut(s) 146, 278, 402, 454, 628, 629, 705
BssMI GATC 2 cut(s) 46, 384
BssNI GRCGYC 1 cut(s) 151
BssSI CACGAG 2 cut(s) 716, 752
Bst2BI CACGAG 2 cut(s) 716, 752
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 3 cut(s) 213, 364, 379
Bst6I CTCTTC 4 cut(s) 86, 113, 522, 590
BstACI GRCGYC 1 cut(s) 151
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 5 cut(s) 185, 461, 639, 683, 802
BstF5I GGATG 4 cut(s) 344, 442, 670, 733
BstH2I RGCGCY 2 cut(s) 154, 199
BstHHI GCGC 2 cut(s) 153, 198
BstKTI GATC 2 cut(s) 49, 387
BstMAI GTCTC 2 cut(s) 265, 789
BstMBI GATC 2 cut(s) 46, 384
BstMWI GCNNNNNNNGC 5 cut(s) 193, 241, 450, 515, 755
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 9 cut(s) 277, 278, 401, 402, 484, 513, 580, 627, 628
BstV1I GCAGC 6 cut(s) 199, 202, 205, 453, 570, 639
BsuRI GGCC 2 cut(s) 459, 463
BtgZI GCGATG 1 cut(s) 752
BtsCI GGATG 4 cut(s) 344, 442, 670, 733
Cac8I GCNNGC 5 cut(s) 185, 461, 639, 683, 802
CfoI GCGC 2 cut(s) 153, 198
Cfr10I RCCGGY 2 cut(s) 459, 637
Cfr13I GGNCC 2 cut(s) 282, 493
Cfr9I CCCGGG 3 cut(s) 278, 402, 628
CseI GACGC 2 cut(s) 433, 806
Csp6I GTAC 3 cut(s) 380, 625, 763
CviAII CATG 1 cut(s) 172
CviQI GTAC 3 cut(s) 380, 625, 763
DinI GGCGCC 1 cut(s) 152
DpnI GATC 2 cut(s) 48, 386
DpnII GATC 2 cut(s) 46, 384
DraIII CACNNNGTG 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 4 cut(s) 86, 113, 522, 590
EarI CTCTTC 4 cut(s) 86, 113, 522, 590
EciI GGCGGA 2 cut(s) 82, 170
Ecl136II GAGCTC 2 cut(s) 313, 532
Eco24I GRGCYC 2 cut(s) 315, 534
Eco31I GGTCTC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 282, 493
Eco47III AGCGCT 1 cut(s) 197
Eco53kI GAGCTC 2 cut(s) 313, 532
Eco88I CYCGRG 5 cut(s) 96, 278, 308, 402, 628
EcoICRI GAGCTC 2 cut(s) 313, 532
EcoRI GAATTC 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 580
EcoT38I GRGCYC 2 cut(s) 315, 534
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
Esp3I CGTCTC 1 cut(s) 789
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 173, 524, 591, 648
FaqI GGGAC 3 cut(s) 160, 199, 295
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 9 cut(s) 8, 188, 191, 194, 442, 507, 559, 611, 653
FokI GGATG 4 cut(s) 331, 449, 677, 740
FriOI GRGCYC 2 cut(s) 315, 534
FseI GGCCGGCC 1 cut(s) 463
Fsp4HI GCNGC 9 cut(s) 8, 188, 191, 194, 442, 507, 559, 611, 653
GlaI GCGC 2 cut(s) 152, 197
GluI GCNGC 9 cut(s) 8, 188, 191, 194, 442, 507, 559, 611, 653
HaeII RGCGCY 2 cut(s) 154, 199
HaeIII GGCC 2 cut(s) 459, 463
HapII CCGG 9 cut(s) 279, 353, 403, 460, 485, 514, 629, 638, 686
HgaI GACGC 2 cut(s) 433, 806
HhaI GCGC 2 cut(s) 153, 198
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 2 cut(s) 151, 196
HinP1I GCGC 2 cut(s) 151, 196
HinfI GANTC 3 cut(s) 251, 416, 500
HpaII CCGG 9 cut(s) 279, 353, 403, 460, 485, 514, 629, 638, 686
HphI GGTGA 2 cut(s) 685, 704
Hpy166II GTNNAC 2 cut(s) 295, 763
Hpy188I TCNGA 7 cut(s) 223, 250, 319, 436, 472, 553, 727
Hpy188III TCNNGA 4 cut(s) 55, 448, 752, 769
Hpy8I GTNNAC 2 cut(s) 295, 763
HpyAV CCTTC 5 cut(s) 97, 147, 314, 670, 683
HpyCH4III ACNGT 3 cut(s) 213, 364, 379
HpyCH4IV ACGT 2 cut(s) 291, 765
HpyCH4V TGCA 2 cut(s) 655, 702
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 241, 450, 515, 755
HpySE526I ACGT 2 cut(s) 291, 765
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 2 cut(s) 151, 196
KasI GGCGCC 1 cut(s) 150
KroI GCCGGC 2 cut(s) 459, 637
KroNI GCCGGC 2 cut(s) 461, 639
Kzo9I GATC 2 cut(s) 46, 384
LguI GCTCTTC 1 cut(s) 522
LmnI GCTCC 3 cut(s) 450, 607, 712
Lsp1109I GCAGC 6 cut(s) 199, 202, 205, 453, 570, 639
LweI GCATC 1 cut(s) 655
MaeII ACGT 2 cut(s) 291, 765
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 48, 386
MbiI CCGCTC 1 cut(s) 610
MboI GATC 2 cut(s) 46, 384
MboII GAAGA 5 cut(s) 73, 100, 539, 583, 607
MhlI GDGCHC 3 cut(s) 315, 534, 717
MluCI AATT 4 cut(s) 340, 428, 547, 564
Mly113I GGCGCC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 772
MroNI GCCGGC 2 cut(s) 459, 637
MseI TTAA 1 cut(s) 820
MspA1I CMGCKG 1 cut(s) 561
MspI CCGG 9 cut(s) 279, 353, 403, 460, 485, 514, 629, 638, 686
MspR9I CCNGG 9 cut(s) 279, 280, 403, 404, 486, 515, 582, 629, 630
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 5 cut(s) 193, 241, 450, 515, 755
NaeI GCCGGC 2 cut(s) 461, 639
NarI GGCGCC 1 cut(s) 151
NciI CCSGG 8 cut(s) 279, 280, 403, 404, 486, 515, 629, 630
NdeII GATC 2 cut(s) 46, 384
NgoMIV GCCGGC 2 cut(s) 459, 637
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 3 cut(s) 152, 283, 452
NmeAIII GCCGAG 2 cut(s) 127, 479
NmuCI GTSAC 1 cut(s) 373
NspV TTCGAA 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 613
PdiI GCCGGC 2 cut(s) 461, 639
PfeI GAWTC 3 cut(s) 251, 416, 500
PkrI GCNGC 9 cut(s) 9, 189, 192, 195, 443, 508, 560, 612, 654
PluTI GGCGCC 1 cut(s) 154
Psp124BI GAGCTC 2 cut(s) 315, 534
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 3 cut(s) 152, 283, 452
PspPI GGNCC 2 cut(s) 282, 493
PspXI VCTCGAGB 1 cut(s) 308
RigI GGCCGGCC 1 cut(s) 463
RsaI GTAC 3 cut(s) 381, 626, 764
RsaNI GTAC 3 cut(s) 380, 625, 763
SacI GAGCTC 2 cut(s) 315, 534
SapI GCTCTTC 1 cut(s) 522
SaqAI TTAA 1 cut(s) 820
SatI GCNGC 9 cut(s) 8, 188, 191, 194, 442, 507, 559, 611, 653
Sau3AI GATC 2 cut(s) 46, 384
Sau96I GGNCC 2 cut(s) 282, 493
ScrFI CCNGG 9 cut(s) 279, 280, 403, 404, 486, 515, 582, 629, 630
SduI GDGCHC 3 cut(s) 315, 534, 717
SfaNI GCATC 1 cut(s) 655
SfoI GGCGCC 1 cut(s) 152
Sfr274I CTCGAG 1 cut(s) 308
SfuI TTCGAA 1 cut(s) 358
SinI GGWCC 2 cut(s) 282, 493
SlaI CTCGAG 1 cut(s) 308
SmaI CCCGGG 3 cut(s) 280, 404, 630
SmlI CTYRAG 2 cut(s) 230, 308
SmoI CTYRAG 2 cut(s) 230, 308
Sse9I AATT 4 cut(s) 340, 428, 547, 564
SsiI CCGC 8 cut(s) 8, 93, 181, 506, 518, 561, 610, 732
SspDI GGCGCC 1 cut(s) 150
SspI AATATT 1 cut(s) 543
SstI GAGCTC 2 cut(s) 315, 534
StyD4I CCNGG 9 cut(s) 277, 278, 401, 402, 484, 513, 580, 627, 628
TaaI ACNGT 3 cut(s) 213, 364, 379
TaiI ACGT 2 cut(s) 294, 768
TaqI TCGA 5 cut(s) 238, 309, 358, 390, 617
TasI AATT 4 cut(s) 340, 428, 547, 564
TauI GCSGC 3 cut(s) 10, 509, 613
TfiI GAWTC 3 cut(s) 251, 416, 500
Tru1I TTAA 1 cut(s) 820
Tru9I TTAA 1 cut(s) 820
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 6 cut(s) 187, 190, 193, 441, 558, 652
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 2 cut(s) 333, 494
TspGWI ACGGA 1 cut(s) 397
TspMI CCCGGG 3 cut(s) 278, 402, 628
VpaK11BI GGWCC 2 cut(s) 282, 493
XapI RAATTY 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 308
XmaI CCCGGG 3 cut(s) 278, 402, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.