FvH4_7g32940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014384
Physical Location & Seq
Reverse (-)
23578353 .. 23579168
816 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32940.t1

Sequence Viewer

Length: 816 bp
ATGCCACCGCCACAACAACCACCACCAATCAGAAACAGCCACGTCAACCTCCCCGATCTCCTCCTCACCGCCCTCTCCGTCTTCTACCTCTTCTCCTCCTCCTCCTCCAAAATTAAACCCCCACTCCCCAATTTCCCATCCTACCCTCGCCGATTCATCAAAATTCCCACAATGTCCCTCCACCACCACAACCACCACCGCAGCTTCGCCACGCCGCAGTCGCTCTCCGACTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCCTGGGGCGTCAAACCAGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTCCCTAGCCGACTCCACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGACGATCGGAACCGGGTCCTGGTCGAATCGGAGCAAGAACTCTCCGACGGCAGCGTCAGGACACGTGGCAGGCCTCTATCGGAGAAGATGAAGCCCGGGGAGGATCCGATAACGGCGGCGAACCGGGCCGTGTTGGAGGAGCTCGGGTCGGTACTGAACGGGTCGGGTCAAGTGAAGATTGTGCCCGGTTCGTATAGCAAGAAGGTGGAGGAGAGAAGCTCGGCGAGTTATCCGGGGCTGCCGGCGTGTTACGAGGTGCATTCGGTGGATGCGACGGTGGAGGGGTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATGCGGATTCCGGCGAGAGGCGTGTTGCGAATGAGGCTGTGTCTGTGAAGAAGCATTTCTGGAAATGGGTTAGTCCTGATTCGATAAACTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

272

Amino Acids

30.17

Weight (kDa)

6.42

Isoelectric Point (pI)

59.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 1 cut(s) 244
AciI CCGC 9 cut(s) 8, 69, 199, 215, 242, 250, 356, 512, 725
AclWI GGATC 2 cut(s) 494, 507
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 415, 738
AflIII ACRYGT 1 cut(s) 458
AjiI CACGTC 2 cut(s) 43, 376
AjnI CCWGG 3 cut(s) 269, 283, 414
AluBI AGCT 5 cut(s) 204, 319, 336, 538, 615
AluI AGCT 5 cut(s) 204, 319, 336, 538, 615
Alw21I GWGCWC 2 cut(s) 321, 540
AlwI GGATC 2 cut(s) 494, 507
Ama87I CYCGRG 3 cut(s) 314, 491, 539
AoxI GGCC 2 cut(s) 467, 522
ApeKI GCWGC 3 cut(s) 201, 447, 634
ApoI RAATTY 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 776
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 4 cut(s) 288, 366, 412, 522
AsuC2I CCSGG 6 cut(s) 410, 492, 493, 521, 582, 630
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 3 cut(s) 314, 491, 539
AvaII GGWCC 3 cut(s) 288, 366, 412
BaeGI GKGCMC 1 cut(s) 582
BamHI GGATCC 1 cut(s) 499
BanII GRGCYC 2 cut(s) 321, 540
BbrPI CACGTG 1 cut(s) 461
BbsI GAAGAC 1 cut(s) 73
Bbv12I GWGCWC 2 cut(s) 321, 540
BbvI GCAGC 3 cut(s) 213, 459, 621
BccI CCATC 1 cut(s) 145
BceAI ACGGC 3 cut(s) 460, 509, 525
BciT130I CCWGG 3 cut(s) 271, 285, 416
BcnI CCSGG 6 cut(s) 410, 492, 493, 521, 582, 630
BfaI CTAG 1 cut(s) 341
BisI GCNGC 6 cut(s) 202, 215, 242, 448, 513, 635
BlsI GCNGC 6 cut(s) 203, 216, 243, 449, 514, 636
Bme1390I CCNGG 9 cut(s) 271, 285, 410, 416, 492, 493, 521, 582, 630
Bme18I GGWCC 3 cut(s) 288, 366, 412
BmeT110I CYCGRG 3 cut(s) 314, 491, 539
BmgBI CACGTC 2 cut(s) 43, 376
BmgT120I GGNCC 4 cut(s) 288, 366, 412, 522
BmiI GGNNCC 4 cut(s) 289, 407, 413, 501
BmrFI CCNGG 9 cut(s) 271, 285, 410, 416, 492, 493, 521, 582, 630
BmsI GCATC 1 cut(s) 655
BpiI GAAGAC 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 599, 631
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 6 cut(s) 410, 492, 493, 521, 582, 630
BsaAI YACGTR 1 cut(s) 461
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 5 cut(s) 270, 284, 491, 492, 629
BsaXI ACNNNNNCTCC 8 cut(s) 77, 107, 108, 138, 527, 557, 704, 734
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 738
Bse118I RCCGGY 2 cut(s) 358, 637
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 3 cut(s) 271, 285, 416
BseDI CCNNGG 5 cut(s) 270, 284, 491, 492, 629
BseGI GGATG 2 cut(s) 137, 670
BseLI CCNNNNNNNGG 2 cut(s) 415, 738
BseNI ACTGG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 582
BseXI GCAGC 3 cut(s) 213, 459, 621
Bsh1236I CGCG 1 cut(s) 244
Bsh1285I CGRYCG 1 cut(s) 403
BshFI GGCC 2 cut(s) 469, 524
BsiEI CGRYCG 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 321, 540
BsiHKCI CYCGRG 3 cut(s) 314, 491, 539
BsiSI CCGG 9 cut(s) 359, 409, 492, 520, 582, 629, 638, 686, 732
BslFI GGGAC 2 cut(s) 160, 301
BslI CCNNNNNNNGG 2 cut(s) 415, 738
BsmFI GGGAC 2 cut(s) 160, 301
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 2 cut(s) 469, 524
BsoBI CYCGRG 3 cut(s) 314, 491, 539
Bsp1286I GDGCHC 3 cut(s) 321, 540, 582
Bsp143I GATC 3 cut(s) 55, 400, 499
BspACI CCGC 9 cut(s) 8, 69, 199, 215, 242, 250, 356, 512, 725
BspANI GGCC 2 cut(s) 469, 524
BspFNI CGCG 1 cut(s) 244
BspLI GGNNCC 4 cut(s) 289, 407, 413, 501
BspPI GGATC 2 cut(s) 494, 507
BsrBI CCGCTC 1 cut(s) 252
BsrFI RCCGGY 2 cut(s) 358, 637
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 2 cut(s) 358, 637
BssECI CCNNGG 5 cut(s) 270, 284, 491, 492, 629
BssMI GATC 3 cut(s) 55, 400, 499
BssNI GRCGYC 1 cut(s) 276
Bst2UI CCWGG 3 cut(s) 271, 285, 416
Bst4CI ACNGT 3 cut(s) 370, 385, 673
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 264, 467, 639
BstF5I GGATG 2 cut(s) 137, 670
BstFNI CGCG 1 cut(s) 244
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 3 cut(s) 58, 403, 502
BstMBI GATC 3 cut(s) 55, 400, 499
BstMCI CGRYCG 1 cut(s) 403
BstMWI GCNNNNNNNGC 4 cut(s) 220, 241, 521, 755
BstNI CCWGG 3 cut(s) 271, 285, 416
BstSCI CCNGG 9 cut(s) 269, 283, 408, 414, 490, 491, 519, 580, 628
BstSLI GKGCMC 1 cut(s) 582
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 3 cut(s) 213, 459, 621
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 2 cut(s) 469, 524
BtrI CACGTC 2 cut(s) 43, 376
BtsCI GGATG 2 cut(s) 137, 670
Cac8I GCNNGC 3 cut(s) 264, 467, 639
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 2 cut(s) 358, 637
Cfr13I GGNCC 4 cut(s) 288, 366, 412, 522
Cfr9I CCCGGG 1 cut(s) 491
CpoI CGGWCCG 1 cut(s) 366
CseI GACGC 2 cut(s) 265, 439
Csp6I GTAC 1 cut(s) 548
CspI CGGWCCG 1 cut(s) 366
CviAII CATG 1 cut(s) 716
CviQI GTAC 1 cut(s) 548
DpnI GATC 3 cut(s) 57, 402, 501
DpnII GATC 3 cut(s) 55, 400, 499
DrdI GACNNNNNNGTC 1 cut(s) 449
DseDI GACNNNNNNGTC 1 cut(s) 449
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 2 cut(s) 319, 538
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 2 cut(s) 321, 540
Eco47I GGWCC 3 cut(s) 288, 366, 412
Eco53kI GAGCTC 2 cut(s) 319, 538
Eco72I CACGTG 1 cut(s) 461
Eco88I CYCGRG 3 cut(s) 314, 491, 539
EcoICRI GAGCTC 2 cut(s) 319, 538
EcoO109I RGGNCCY 1 cut(s) 412
EcoRII CCWGG 3 cut(s) 269, 283, 414
EcoT38I GRGCYC 2 cut(s) 321, 540
FaeI CATG 1 cut(s) 719
FaiI YATR 3 cut(s) 591, 717, 723
FaqI GGGAC 2 cut(s) 160, 301
FatI CATG 1 cut(s) 715
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 6 cut(s) 202, 215, 242, 448, 513, 635
FokI GGATG 2 cut(s) 124, 677
FriOI GRGCYC 2 cut(s) 321, 540
Fsp4HI GCNGC 6 cut(s) 202, 215, 242, 448, 513, 635
FspBI CTAG 1 cut(s) 341
GlaI GCGC 1 cut(s) 245
GluI GCNGC 6 cut(s) 202, 215, 242, 448, 513, 635
HaeIII GGCC 2 cut(s) 469, 524
HapII CCGG 9 cut(s) 359, 409, 492, 520, 582, 629, 638, 686, 732
HgaI GACGC 2 cut(s) 265, 439
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 719
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 6 cut(s) 153, 257, 347, 422, 728, 800
HpaII CCGG 9 cut(s) 359, 409, 492, 520, 582, 629, 638, 686, 732
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 3 cut(s) 46, 301, 373
Hpy188III TCNNGA 5 cut(s) 454, 700, 781, 797, 813
Hpy8I GTNNAC 3 cut(s) 46, 301, 373
Hpy99I CGWCG 4 cut(s) 380, 401, 446, 673
HpyAV CCTTC 2 cut(s) 320, 592
HpyCH4III ACNGT 3 cut(s) 370, 385, 673
HpyCH4IV ACGT 4 cut(s) 42, 297, 375, 460
HpyCH4V TGCA 1 cut(s) 655
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 241, 521, 755
HpySE526I ACGT 4 cut(s) 42, 297, 375, 460
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 719
HspAI GCGC 1 cut(s) 244
KroI GCCGGC 1 cut(s) 637
KroNI GCCGGC 1 cut(s) 639
Kzo9I GATC 3 cut(s) 55, 400, 499
LmnI GCTCC 5 cut(s) 257, 341, 427, 535, 712
Lsp1109I GCAGC 3 cut(s) 213, 459, 621
LweI GCATC 1 cut(s) 655
MaeI CTAG 1 cut(s) 341
MaeII ACGT 4 cut(s) 42, 297, 375, 460
MaeIII GTNAC 3 cut(s) 379, 644, 700
MalI GATC 3 cut(s) 57, 402, 501
MbiI CCGCTC 1 cut(s) 252
MboI GATC 3 cut(s) 55, 400, 499
MboII GAAGA 5 cut(s) 73, 82, 493, 583, 781
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 3 cut(s) 321, 540, 582
MluCI AATT 3 cut(s) 111, 130, 162
MlyI GAGTC 2 cut(s) 251, 341
MmeI TCCRAC 4 cut(s) 252, 279, 465, 510
MroNI GCCGGC 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 776
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 9 cut(s) 359, 409, 492, 520, 582, 629, 638, 686, 732
MspR9I CCNGG 9 cut(s) 271, 285, 410, 416, 492, 493, 521, 582, 630
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 3 cut(s) 271, 285, 416
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 220, 241, 521, 755
NaeI GCCGGC 1 cut(s) 639
NciI CCSGG 6 cut(s) 410, 492, 493, 521, 582, 630
NdeII GATC 3 cut(s) 55, 400, 499
NgoMIV GCCGGC 1 cut(s) 637
NlaIII CATG 1 cut(s) 719
NlaIV GGNNCC 4 cut(s) 289, 407, 413, 501
NmeAIII GCCGAG 1 cut(s) 596
NmuCI GTSAC 2 cut(s) 379, 700
PaeR7I CTCGAG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 469
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 665
PctI GAATGC 1 cut(s) 655
PdiI GCCGGC 1 cut(s) 639
PdmI GAANNNNTTC 1 cut(s) 776
PfeI GAWTC 4 cut(s) 153, 422, 728, 800
PkrI GCNGC 6 cut(s) 203, 216, 243, 449, 514, 636
Ple19I CGATCG 1 cut(s) 403
PleI GAGTC 2 cut(s) 251, 341
PmaCI CACGTG 1 cut(s) 461
PmlI CACGTG 1 cut(s) 461
PpsI GAGTC 2 cut(s) 251, 341
Ppu21I YACGTR 1 cut(s) 461
PpuMI RGGWCCY 1 cut(s) 412
Psp124BI GAGCTC 2 cut(s) 321, 540
Psp5II RGGWCCY 1 cut(s) 412
Psp6I CCWGG 3 cut(s) 269, 283, 414
PspCI CACGTG 1 cut(s) 461
PspGI CCWGG 3 cut(s) 269, 283, 414
PspN4I GGNNCC 4 cut(s) 289, 407, 413, 501
PspPI GGNCC 4 cut(s) 288, 366, 412, 522
PspPPI RGGWCCY 1 cut(s) 412
PspXI VCTCGAGB 1 cut(s) 314
PsuI RGATCY 1 cut(s) 499
PvuI CGATCG 1 cut(s) 403
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 1 cut(s) 720
Rsr2I CGGWCCG 1 cut(s) 366
RsrII CGGWCCG 1 cut(s) 366
SacI GAGCTC 2 cut(s) 321, 540
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 6 cut(s) 202, 215, 242, 448, 513, 635
Sau3AI GATC 3 cut(s) 55, 400, 499
Sau96I GGNCC 4 cut(s) 288, 366, 412, 522
SchI GAGTC 2 cut(s) 251, 341
ScrFI CCNGG 9 cut(s) 271, 285, 410, 416, 492, 493, 521, 582, 630
SduI GDGCHC 3 cut(s) 321, 540, 582
SfaNI GCATC 1 cut(s) 655
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 3 cut(s) 288, 366, 412
SlaI CTCGAG 1 cut(s) 314
SmaI CCCGGG 1 cut(s) 493
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 2 cut(s) 236, 314
SmoI CTYRAG 2 cut(s) 236, 314
Sse9I AATT 3 cut(s) 111, 130, 162
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 9 cut(s) 8, 69, 199, 215, 242, 250, 356, 512, 725
SspMI CTAG 1 cut(s) 341
SstI GAGCTC 2 cut(s) 321, 540
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 9 cut(s) 269, 283, 408, 414, 490, 491, 519, 580, 628
TaaI ACNGT 3 cut(s) 370, 385, 673
TaiI ACGT 4 cut(s) 45, 300, 378, 463
TaqI TCGA 4 cut(s) 315, 396, 420, 803
TasI AATT 3 cut(s) 111, 130, 162
TauI GCSGC 3 cut(s) 217, 244, 515
TfiI GAWTC 4 cut(s) 153, 422, 728, 800
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 2 cut(s) 379, 700
TseI GCWGC 3 cut(s) 201, 447, 634
Tsp45I GTSAC 2 cut(s) 379, 700
TspDTI ATGAA 2 cut(s) 145, 500
TspGWI ACGGA 2 cut(s) 67, 719
TspMI CCCGGG 1 cut(s) 491
VpaK11BI GGWCC 3 cut(s) 288, 366, 412
XapI RAATTY 1 cut(s) 162
XhoI CTCGAG 1 cut(s) 314
XmaI CCCGGG 1 cut(s) 491
XmnI GAANNNNTTC 1 cut(s) 776
XspI CTAG 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.