Rh1BG419100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014384
Physical Location & Seq
Reverse (-)
53994639 .. 53999916
5278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG419100.1

Sequence Viewer

Length: 672 bp
ATGTCGCTCCACCACCACCACCGCCACCGGGACTTCGCCACGCCGCAATCGCTCTCCGACTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAGAGCTCCCTAGCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCCAGCAAGAGTTATCGGACGGCAGCGTCAGGACCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATATCGGCGGCGAACCGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCATTGTGAAGATTGTGCCCGGTTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGACGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATTCCGATTCCGGCGAGACAAGTGTTGCTCATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTGCTATTACTTTTAAGTAAAGAAAAGTGCATTGCAAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

223

Amino Acids

24.58

Weight (kDa)

5.88

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 278
AccBSI CCGCTC 2 cut(s) 81, 448
AccII CGCG 1 cut(s) 73
AciI CCGC 7 cut(s) 22, 44, 71, 79, 185, 341, 448
AcyI GRCGYC 1 cut(s) 458
AfiI CCNNNNNNNGG 4 cut(s) 28, 244, 294, 337
AjiI CACGTC 1 cut(s) 205
AluBI AGCT 5 cut(s) 148, 165, 367, 453, 490
AluI AGCT 5 cut(s) 148, 165, 367, 453, 490
Alw21I GWGCWC 4 cut(s) 150, 167, 369, 455
Alw26I GTCTC 1 cut(s) 569
Ama87I CYCGRG 3 cut(s) 143, 288, 368
AoxI GGCC 2 cut(s) 296, 351
ApeKI GCWGC 2 cut(s) 276, 490
Asp700I GAANNNNTTC 1 cut(s) 614
AspLEI GCGC 2 cut(s) 75, 230
AspS9I GGNCC 6 cut(s) 117, 195, 285, 297, 328, 351
AsuC2I CCSGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
AvaI CYCGRG 3 cut(s) 143, 288, 368
AvaII GGWCC 4 cut(s) 117, 195, 285, 328
BaeGI GKGCMC 1 cut(s) 420
BanII GRGCYC 4 cut(s) 150, 167, 369, 455
BauI CACGAG 1 cut(s) 97
Bbv12I GWGCWC 4 cut(s) 150, 167, 369, 455
BbvI GCAGC 2 cut(s) 288, 477
BceAI ACGGC 3 cut(s) 289, 338, 415
BciVI GTATCC 1 cut(s) 474
BcnI CCSGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
BcoDI GTCTC 1 cut(s) 569
BfaI CTAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 231
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 5 cut(s) 44, 71, 277, 342, 491
BlsI GCNGC 5 cut(s) 45, 72, 278, 343, 492
Bme1390I CCNGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
Bme18I GGWCC 4 cut(s) 117, 195, 285, 328
BmeT110I CYCGRG 3 cut(s) 143, 288, 368
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 6 cut(s) 117, 195, 285, 297, 328, 351
BmiI GGNNCC 4 cut(s) 118, 287, 299, 330
BmrFI CCNGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
BplI GAGNNNNNCTC 2 cut(s) 437, 469
BpuEI CTTGAG 1 cut(s) 50
BpuMI CCSGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
BsaHI GRCGYC 1 cut(s) 458
BsaJI CCNNGG 4 cut(s) 113, 288, 289, 467
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 244, 294, 337
Bse118I RCCGGY 2 cut(s) 187, 475
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 657
BseDI CCNNGG 4 cut(s) 113, 288, 289, 467
BseLI CCNNNNNNNGG 4 cut(s) 28, 244, 294, 337
BseMI GCAATG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 65
BseRI GAGGAG 4 cut(s) 458, 542, 560, 563
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 2 cut(s) 288, 477
BseYI CCCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 298, 353
BsiHKAI GWGCWC 4 cut(s) 150, 167, 369, 455
BsiHKCI CYCGRG 3 cut(s) 143, 288, 368
BslFI GGGAC 2 cut(s) 44, 130
BslI CCNNNNNNNGG 4 cut(s) 28, 244, 294, 337
BsmAI GTCTC 1 cut(s) 569
BsmFI GGGAC 2 cut(s) 44, 130
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 2 cut(s) 298, 353
BsoBI CYCGRG 3 cut(s) 143, 288, 368
Bsp1286I GDGCHC 5 cut(s) 150, 167, 369, 420, 455
BspACI CCGC 7 cut(s) 22, 44, 71, 79, 185, 341, 448
BspANI GGCC 2 cut(s) 298, 353
BspFNI CGCG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 4 cut(s) 118, 287, 299, 330
BspQI GCTCTTC 1 cut(s) 357
BsrBI CCGCTC 2 cut(s) 81, 448
BsrDI GCAATG 1 cut(s) 657
BsrFI RCCGGY 2 cut(s) 187, 475
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 2 cut(s) 187, 475
BssECI CCNNGG 4 cut(s) 113, 288, 289, 467
BssNI GRCGYC 1 cut(s) 458
BssSI CACGAG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 199, 214, 511
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 458
BstC8I GCNNGC 3 cut(s) 93, 477, 521
BstFNI CGCG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 75, 230
BstMAI GTCTC 1 cut(s) 569
BstMWI GCNNNNNNNGC 4 cut(s) 49, 70, 350, 593
BstSCI CCNGG 9 cut(s) 27, 112, 237, 287, 288, 319, 348, 418, 466
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 288, 477
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 2 cut(s) 298, 353
BtrI CACGTC 1 cut(s) 205
Cac8I GCNNGC 3 cut(s) 93, 477, 521
CciI TCATGA 1 cut(s) 589
CfoI GCGC 2 cut(s) 75, 230
Cfr10I RCCGGY 2 cut(s) 187, 475
Cfr13I GGNCC 6 cut(s) 117, 195, 285, 297, 328, 351
Cfr9I CCCGGG 1 cut(s) 288
CpoI CGGWCCG 1 cut(s) 195
CseI GACGC 3 cut(s) 268, 447, 512
CspI CGGWCCG 1 cut(s) 195
CviAII CATG 2 cut(s) 554, 590
DrdI GACNNNNNNGTC 1 cut(s) 278
DseDI GACNNNNNNGTC 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 4 cut(s) 148, 165, 367, 453
Eco24I GRGCYC 4 cut(s) 150, 167, 369, 455
Eco47I GGWCC 4 cut(s) 117, 195, 285, 328
Eco53kI GAGCTC 4 cut(s) 148, 165, 367, 453
Eco88I CYCGRG 3 cut(s) 143, 288, 368
EcoICRI GAGCTC 4 cut(s) 148, 165, 367, 453
EcoO109I RGGNCCY 3 cut(s) 285, 297, 328
EcoT38I GRGCYC 4 cut(s) 150, 167, 369, 455
FaeI CATG 2 cut(s) 557, 593
FaiI YATR 4 cut(s) 335, 429, 555, 591
FaqI GGGAC 2 cut(s) 44, 130
FatI CATG 2 cut(s) 553, 589
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 5 cut(s) 44, 71, 277, 342, 491
FriOI GRGCYC 4 cut(s) 150, 167, 369, 455
Fsp4HI GCNGC 5 cut(s) 44, 71, 277, 342, 491
FspBI CTAG 1 cut(s) 170
GlaI GCGC 2 cut(s) 74, 229
GluI GCNGC 5 cut(s) 44, 71, 277, 342, 491
GsaI CCCAGC 1 cut(s) 259
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 2 cut(s) 298, 353
HgaI GACGC 3 cut(s) 268, 447, 512
HhaI GCGC 2 cut(s) 75, 230
Hin1I GRCGYC 1 cut(s) 458
Hin1II CATG 2 cut(s) 557, 593
Hin6I GCGC 2 cut(s) 73, 228
HinP1I GCGC 2 cut(s) 73, 228
HinfI GANTC 3 cut(s) 86, 176, 566
Hpy166II GTNNAC 3 cut(s) 130, 202, 502
Hpy188I TCNGA 7 cut(s) 58, 85, 154, 195, 271, 307, 565
Hpy188III TCNNGA 6 cut(s) 283, 395, 538, 590, 607, 619
Hpy8I GTNNAC 3 cut(s) 130, 202, 502
Hpy99I CGWCG 2 cut(s) 209, 463
HpyAV CCTTC 2 cut(s) 149, 430
HpyCH4III ACNGT 3 cut(s) 199, 214, 511
HpyCH4IV ACGT 2 cut(s) 126, 204
HpyCH4V TGCA 3 cut(s) 493, 657, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 70, 350, 593
HpySE526I ACGT 2 cut(s) 126, 204
Hsp92I GRCGYC 1 cut(s) 458
Hsp92II CATG 2 cut(s) 557, 593
HspAI GCGC 2 cut(s) 73, 228
KroI GCCGGC 1 cut(s) 475
KroNI GCCGGC 1 cut(s) 477
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 6 cut(s) 12, 86, 170, 445, 450, 550
Lsp1109I GCAGC 2 cut(s) 288, 477
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 126, 204
MaeIII GTNAC 3 cut(s) 208, 482, 538
MbiI CCGCTC 2 cut(s) 81, 448
MboII GAAGA 3 cut(s) 322, 374, 421
MhlI GDGCHC 5 cut(s) 150, 167, 369, 420, 455
MlyI GAGTC 2 cut(s) 80, 170
MmeI TCCRAC 4 cut(s) 81, 108, 285, 339
MroNI GCCGGC 1 cut(s) 475
MroXI GAANNNNTTC 1 cut(s) 614
MseI TTAA 1 cut(s) 641
MspR9I CCNGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
Mva1269I GAATGC 1 cut(s) 493
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 4 cut(s) 49, 70, 350, 593
NaeI GCCGGC 1 cut(s) 477
NciI CCSGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
NgoMIV GCCGGC 1 cut(s) 475
NlaIII CATG 2 cut(s) 557, 593
NlaIV GGNNCC 4 cut(s) 118, 287, 299, 330
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 2 cut(s) 208, 538
PaeR7I CTCGAG 1 cut(s) 143
PagI TCATGA 1 cut(s) 589
PciSI GCTCTTC 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 95, 150
PctI GAATGC 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 477
PdmI GAANNNNTTC 1 cut(s) 614
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 5 cut(s) 45, 72, 278, 343, 492
PleI GAGTC 2 cut(s) 80, 170
PpsI GAGTC 2 cut(s) 80, 170
PpuMI RGGWCCY 2 cut(s) 285, 328
Psp124BI GAGCTC 4 cut(s) 150, 167, 369, 455
Psp5II RGGWCCY 2 cut(s) 285, 328
PspFI CCCAGC 1 cut(s) 255
PspN4I GGNNCC 4 cut(s) 118, 287, 299, 330
PspPI GGNCC 6 cut(s) 117, 195, 285, 297, 328, 351
PspPPI RGGWCCY 2 cut(s) 285, 328
PspXI VCTCGAGB 1 cut(s) 143
Rsr2I CGGWCCG 1 cut(s) 195
RsrII CGGWCCG 1 cut(s) 195
SacI GAGCTC 4 cut(s) 150, 167, 369, 455
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 641
SatI GCNGC 5 cut(s) 44, 71, 277, 342, 491
Sau96I GGNCC 6 cut(s) 117, 195, 285, 297, 328, 351
SchI GAGTC 2 cut(s) 80, 170
ScrFI CCNGG 9 cut(s) 29, 114, 239, 289, 290, 321, 350, 420, 468
SduI GDGCHC 5 cut(s) 150, 167, 369, 420, 455
SetI ASST 9 cut(s) 129, 138, 150, 167, 207, 369, 441, 455, 492
Sfr274I CTCGAG 1 cut(s) 143
SinI GGWCC 4 cut(s) 117, 195, 285, 328
SlaI CTCGAG 1 cut(s) 143
SmaI CCCGGG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 65, 143
SmoI CTYRAG 2 cut(s) 65, 143
SsiI CCGC 7 cut(s) 22, 44, 71, 79, 185, 341, 448
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 4 cut(s) 150, 167, 369, 455
StyD4I CCNGG 9 cut(s) 27, 112, 237, 287, 288, 319, 348, 418, 466
TaaI ACNGT 3 cut(s) 199, 214, 511
TaiI ACGT 2 cut(s) 129, 207
TaqI TCGA 4 cut(s) 144, 179, 249, 374
TauI GCSGC 3 cut(s) 46, 73, 344
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 641
Tru9I TTAA 1 cut(s) 641
TseFI GTSAC 2 cut(s) 208, 538
TseI GCWGC 2 cut(s) 276, 490
Tsp45I GTSAC 2 cut(s) 208, 538
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 557
TspMI CCCGGG 1 cut(s) 288
VpaK11BI GGWCC 4 cut(s) 117, 195, 285, 328
XhoI CTCGAG 1 cut(s) 143
XmaI CCCGGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 614
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.