Rh1CG432900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014384
Physical Location & Seq
Reverse (-)
68891197 .. 68893486
2290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG432900.1

Sequence Viewer

Length: 747 bp
ATGTCGCTCCACCACCACCACCGGAACTTCGCCACGCCGCAATCGCTCTCCGATTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAGAGCTCCCTAGCCGACTCGACCCCGCCGGTGCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCGAGCAAGAGTTATCCGACGGCAGTGTCAGGAGCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATATCGGCGGCGAACCGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAGGACGGCATTGTGAAGATTGTGCCCGGTTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGATGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATGCCGATTCCGGCGAGACAAGTGTTGCTCATGAGGCTGTGTCTGTCAAGAAACATTTCTGGAAATGGAATCCCTTGACTTTTAAGCAGCAACTCTCAGAACAGTGTTCTGGGACAATTTTTACCTATCATCTCCCCAGAATCGGTAACATTCCCGAGTATATTCAAGTGTTGGGTTGGTGTGATACATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

248

Amino Acids

27.46

Weight (kDa)

5.56

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 745
AasI GACNNNNNNGTC 1 cut(s) 272
AccBSI CCGCTC 2 cut(s) 75, 442
AccII CGCG 1 cut(s) 67
AciI CCGC 7 cut(s) 38, 65, 73, 179, 187, 335, 442
AcyI GRCGYC 1 cut(s) 452
AfiI CCNNNNNNNGG 3 cut(s) 238, 331, 695
AgsI TTSAA 1 cut(s) 719
AjiI CACGTC 1 cut(s) 199
AluBI AGCT 5 cut(s) 142, 159, 361, 447, 484
AluI AGCT 5 cut(s) 142, 159, 361, 447, 484
Alw21I GWGCWC 4 cut(s) 144, 161, 363, 449
Alw26I GTCTC 1 cut(s) 563
Ama87I CYCGRG 3 cut(s) 137, 362, 707
AoxI GGCC 2 cut(s) 290, 345
ApeKI GCWGC 2 cut(s) 484, 640
Asp700I GAANNNNTTC 1 cut(s) 608
AspLEI GCGC 2 cut(s) 69, 224
AspS9I GGNCC 5 cut(s) 111, 189, 291, 322, 345
AsuC2I CCSGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
AvaI CYCGRG 3 cut(s) 137, 362, 707
AvaII GGWCC 3 cut(s) 111, 189, 322
BaeGI GKGCMC 1 cut(s) 414
BanII GRGCYC 4 cut(s) 144, 161, 363, 449
BauI CACGAG 1 cut(s) 91
Bbv12I GWGCWC 4 cut(s) 144, 161, 363, 449
BbvI GCAGC 2 cut(s) 471, 652
BceAI ACGGC 3 cut(s) 283, 332, 409
BciVI GTATCC 1 cut(s) 468
BcnI CCSGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
BcoDI GTCTC 1 cut(s) 563
BfaI CTAG 1 cut(s) 164
BfoI RGCGCY 1 cut(s) 225
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 5 cut(s) 38, 65, 336, 485, 641
BlsI GCNGC 5 cut(s) 39, 66, 337, 486, 642
Bme1390I CCNGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
Bme18I GGWCC 3 cut(s) 111, 189, 322
BmeT110I CYCGRG 3 cut(s) 137, 362, 707
BmgBI CACGTC 1 cut(s) 199
BmgT120I GGNCC 5 cut(s) 111, 189, 291, 322, 345
BmiI GGNNCC 4 cut(s) 112, 281, 293, 324
BmrFI CCNGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
BmsI GCATC 1 cut(s) 487
BplI GAGNNNNNCTC 2 cut(s) 431, 463
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
BsaHI GRCGYC 1 cut(s) 452
BsaJI CCNNGG 3 cut(s) 107, 283, 461
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 536, 566
Bsc4I CCNNNNNNNGG 3 cut(s) 238, 331, 695
Bse118I RCCGGY 2 cut(s) 181, 469
BseDI CCNNGG 3 cut(s) 107, 283, 461
BseGI GGATG 1 cut(s) 502
BseLI CCNNNNNNNGG 3 cut(s) 238, 331, 695
BseMII CTCAG 1 cut(s) 663
BseRI GAGGAG 4 cut(s) 452, 536, 554, 557
BseSI GKGCMC 1 cut(s) 414
BseXI GCAGC 2 cut(s) 471, 652
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 2 cut(s) 292, 347
BsiHKAI GWGCWC 4 cut(s) 144, 161, 363, 449
BsiHKCI CYCGRG 3 cut(s) 137, 362, 707
BslFI GGGAC 2 cut(s) 124, 679
BslI CCNNNNNNNGG 3 cut(s) 238, 331, 695
BsmAI GTCTC 1 cut(s) 563
BsmFI GGGAC 2 cut(s) 124, 679
BsmI GAATGC 1 cut(s) 487
BsnI GGCC 2 cut(s) 292, 347
BsoBI CYCGRG 3 cut(s) 137, 362, 707
Bsp1286I GDGCHC 5 cut(s) 144, 161, 363, 414, 449
BspACI CCGC 7 cut(s) 38, 65, 73, 179, 187, 335, 442
BspANI GGCC 2 cut(s) 292, 347
BspCNI CTCAG 1 cut(s) 662
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 4 cut(s) 112, 281, 293, 324
BspQI GCTCTTC 1 cut(s) 351
BsrBI CCGCTC 2 cut(s) 75, 442
BsrFI RCCGGY 2 cut(s) 181, 469
BssAI RCCGGY 2 cut(s) 181, 469
BssECI CCNNGG 3 cut(s) 107, 283, 461
BssNI GRCGYC 1 cut(s) 452
BssSI CACGAG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 91
Bst4CI ACNGT 4 cut(s) 193, 208, 505, 657
Bst6I CTCTTC 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 452
BstC8I GCNNGC 3 cut(s) 87, 471, 515
BstDEI CTNAG 1 cut(s) 649
BstF5I GGATG 1 cut(s) 502
BstFNI CGCG 1 cut(s) 67
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 69, 224
BstMAI GTCTC 1 cut(s) 563
BstMWI GCNNNNNNNGC 4 cut(s) 43, 64, 344, 587
BstSCI CCNGG 7 cut(s) 106, 231, 282, 313, 342, 412, 460
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 471, 652
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 292, 347
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 1 cut(s) 502
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 2 cut(s) 277, 662
Cac8I GCNNGC 3 cut(s) 87, 471, 515
CciI TCATGA 1 cut(s) 583
CfoI GCGC 2 cut(s) 69, 224
Cfr10I RCCGGY 2 cut(s) 181, 469
Cfr13I GGNCC 5 cut(s) 111, 189, 291, 322, 345
CpoI CGGWCCG 1 cut(s) 189
CseI GACGC 1 cut(s) 441
CspI CGGWCCG 1 cut(s) 189
CviAII CATG 2 cut(s) 548, 584
DdeI CTNAG 1 cut(s) 649
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Ecl136II GAGCTC 4 cut(s) 142, 159, 361, 447
Eco24I GRGCYC 4 cut(s) 144, 161, 363, 449
Eco47I GGWCC 3 cut(s) 111, 189, 322
Eco53kI GAGCTC 4 cut(s) 142, 159, 361, 447
Eco88I CYCGRG 3 cut(s) 137, 362, 707
EcoICRI GAGCTC 4 cut(s) 142, 159, 361, 447
EcoO109I RGGNCCY 2 cut(s) 291, 322
EcoT38I GRGCYC 4 cut(s) 144, 161, 363, 449
FaeI CATG 2 cut(s) 551, 587
FaiI YATR 7 cut(s) 329, 423, 549, 555, 585, 714, 745
FaqI GGGAC 2 cut(s) 124, 679
FatI CATG 2 cut(s) 547, 583
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 38, 65, 336, 485, 641
FokI GGATG 1 cut(s) 509
FriOI GRGCYC 4 cut(s) 144, 161, 363, 449
Fsp4HI GCNGC 5 cut(s) 38, 65, 336, 485, 641
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 68, 223
GluI GCNGC 5 cut(s) 38, 65, 336, 485, 641
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 292, 347
HgaI GACGC 1 cut(s) 441
HhaI GCGC 2 cut(s) 69, 224
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 2 cut(s) 551, 587
Hin6I GCGC 2 cut(s) 67, 222
HinP1I GCGC 2 cut(s) 67, 222
HinfI GANTC 5 cut(s) 80, 170, 560, 622, 693
Hpy166II GTNNAC 2 cut(s) 124, 196
Hpy188I TCNGA 6 cut(s) 52, 79, 148, 265, 301, 652
Hpy188III TCNNGA 7 cut(s) 277, 389, 532, 584, 601, 613, 707
Hpy8I GTNNAC 2 cut(s) 124, 196
Hpy99I CGWCG 3 cut(s) 203, 269, 457
HpyAV CCTTC 2 cut(s) 143, 424
HpyCH4III ACNGT 4 cut(s) 193, 208, 505, 657
HpyCH4IV ACGT 2 cut(s) 120, 198
HpyCH4V TGCA 1 cut(s) 487
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 64, 344, 587
HpyF3I CTNAG 1 cut(s) 649
HpySE526I ACGT 2 cut(s) 120, 198
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 2 cut(s) 551, 587
HspAI GCGC 2 cut(s) 67, 222
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 7 cut(s) 12, 80, 164, 279, 439, 444, 544
Lsp1109I GCAGC 2 cut(s) 471, 652
LweI GCATC 1 cut(s) 487
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 120, 198
MaeIII GTNAC 4 cut(s) 202, 476, 532, 698
MbiI CCGCTC 2 cut(s) 75, 442
MboII GAAGA 3 cut(s) 316, 368, 415
MhlI GDGCHC 5 cut(s) 144, 161, 363, 414, 449
MluCI AATT 1 cut(s) 669
MlyI GAGTC 2 cut(s) 74, 164
MmeI TCCRAC 4 cut(s) 102, 279, 288, 333
MroNI GCCGGC 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 608
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 1 cut(s) 552
MspR9I CCNGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
Mva1269I GAATGC 1 cut(s) 487
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 4 cut(s) 43, 64, 344, 587
NaeI GCCGGC 1 cut(s) 471
NciI CCSGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
NgoMIV GCCGGC 1 cut(s) 469
NlaIII CATG 2 cut(s) 551, 587
NlaIV GGNNCC 4 cut(s) 112, 281, 293, 324
NmeAIII GCCGAG 2 cut(s) 274, 428
NmuCI GTSAC 2 cut(s) 202, 532
PaeR7I CTCGAG 1 cut(s) 137
PagI TCATGA 1 cut(s) 583
PciSI GCTCTTC 1 cut(s) 351
PcsI WCGNNNNNNNCGW 2 cut(s) 89, 144
PctI GAATGC 1 cut(s) 487
PdiI GCCGGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 608
PfeI GAWTC 3 cut(s) 560, 622, 693
PkrI GCNGC 5 cut(s) 39, 66, 337, 486, 642
PleI GAGTC 2 cut(s) 74, 164
PpsI GAGTC 2 cut(s) 74, 164
PpuMI RGGWCCY 1 cut(s) 322
PsiI TTATAA 1 cut(s) 745
Psp124BI GAGCTC 4 cut(s) 144, 161, 363, 449
Psp5II RGGWCCY 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 112, 281, 293, 324
PspPI GGNCC 5 cut(s) 111, 189, 291, 322, 345
PspPPI RGGWCCY 1 cut(s) 322
PspXI VCTCGAGB 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 552
Rsr2I CGGWCCG 1 cut(s) 189
RsrII CGGWCCG 1 cut(s) 189
SacI GAGCTC 4 cut(s) 144, 161, 363, 449
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 5 cut(s) 38, 65, 336, 485, 641
Sau96I GGNCC 5 cut(s) 111, 189, 291, 322, 345
SchI GAGTC 2 cut(s) 74, 164
ScrFI CCNGG 7 cut(s) 108, 233, 284, 315, 344, 414, 462
SduI GDGCHC 5 cut(s) 144, 161, 363, 414, 449
SfaNI GCATC 1 cut(s) 487
Sfr274I CTCGAG 1 cut(s) 137
SgrAI CRCCGGYG 1 cut(s) 181
SinI GGWCC 3 cut(s) 111, 189, 322
SlaI CTCGAG 1 cut(s) 137
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 59, 137
SmoI CTYRAG 2 cut(s) 59, 137
Sse9I AATT 1 cut(s) 669
SsiI CCGC 7 cut(s) 38, 65, 73, 179, 187, 335, 442
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 4 cut(s) 144, 161, 363, 449
StyD4I CCNGG 7 cut(s) 106, 231, 282, 313, 342, 412, 460
TaaI ACNGT 4 cut(s) 193, 208, 505, 657
TaiI ACGT 2 cut(s) 123, 201
TaqI TCGA 4 cut(s) 138, 173, 243, 368
TasI AATT 1 cut(s) 669
TauI GCSGC 3 cut(s) 40, 67, 338
TfiI GAWTC 3 cut(s) 560, 622, 693
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 2 cut(s) 277, 662
TseFI GTSAC 2 cut(s) 202, 532
TseI GCWGC 2 cut(s) 484, 640
Tsp45I GTSAC 2 cut(s) 202, 532
TspDTI ATGAA 1 cut(s) 323
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 277, 662
VpaK11BI GGWCC 3 cut(s) 111, 189, 322
XhoI CTCGAG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 608
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.