Rw1G040960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014384
Physical Location & Seq
Forward (+)
68030832 .. 68031706
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040960.1

Sequence Viewer

Length: 792 bp
ATGCCACCGCCGCAACAACCACCAATCAGTAACAGCCACGTCAACCTCCCCGAAACCCCCAACAAGCTCCCGATCGTACCCGATCTCCTCCTCTCCGCCCTCTCCGTCTTTTTCCTCTTCTCCTCCTCCTCCTCCAAAATCGCCCTCCTCCCCAAAACCCCACTCTTCAATTTCCCATCCTACCCTCGCCGATTCCCGCGCCTCCGCTCCGACTCGCTCGCCTCCTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAGAGCTCCCTAGCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCCAGCAAGAGTTATCGGACGGCAGCGTCAGGACCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATATCGGCGGCGAACCGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCATTGTGAAGATTGTGCCCGGTTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGCTGCCGGCGTGTTACGAGCTGCATTCGGTGGACGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATGCCGATTCCGGCGAGACAAGTGTTGCTCATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCGATAAACCATGAGCTCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

263

Amino Acids

28.77

Weight (kDa)

5.53

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 404
AccBSI CCGCTC 2 cut(s) 207, 574
AccII CGCG 1 cut(s) 199
AciI CCGC 8 cut(s) 8, 11, 96, 197, 205, 311, 467, 574
AcyI GRCGYC 1 cut(s) 584
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 370, 420, 463
AgsI TTSAA 1 cut(s) 169
AjiI CACGTC 2 cut(s) 40, 331
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 7 cut(s) 67, 274, 291, 493, 579, 616, 781
AluI AGCT 7 cut(s) 67, 274, 291, 493, 579, 616, 781
Alw21I GWGCWC 5 cut(s) 276, 293, 495, 581, 783
Alw26I GTCTC 1 cut(s) 695
Ama87I CYCGRG 3 cut(s) 269, 414, 494
AoxI GGCC 2 cut(s) 422, 477
ApeKI GCWGC 3 cut(s) 402, 598, 616
Asp700I GAANNNNTTC 1 cut(s) 740
AspLEI GCGC 2 cut(s) 201, 356
AspS9I GGNCC 6 cut(s) 243, 321, 411, 423, 454, 477
AsuC2I CCSGG 8 cut(s) 240, 365, 415, 416, 447, 476, 546, 594
AvaI CYCGRG 3 cut(s) 269, 414, 494
AvaII GGWCC 4 cut(s) 243, 321, 411, 454
BaeGI GKGCMC 1 cut(s) 546
BanII GRGCYC 5 cut(s) 276, 293, 495, 581, 783
Bbv12I GWGCWC 5 cut(s) 276, 293, 495, 581, 783
BbvI GCAGC 3 cut(s) 414, 585, 603
BccI CCATC 1 cut(s) 184
BceAI ACGGC 3 cut(s) 415, 464, 541
BciT130I CCWGG 1 cut(s) 226
BciVI GTATCC 1 cut(s) 600
BcnI CCSGG 8 cut(s) 240, 365, 415, 416, 447, 476, 546, 594
BcoDI GTCTC 1 cut(s) 695
BfaI CTAG 1 cut(s) 296
BfoI RGCGCY 1 cut(s) 357
BfuI GTATCC 1 cut(s) 600
BisI GCNGC 5 cut(s) 11, 403, 468, 599, 617
BlsI GCNGC 5 cut(s) 12, 404, 469, 600, 618
Bme1390I CCNGG 9 cut(s) 226, 240, 365, 415, 416, 447, 476, 546, 594
Bme18I GGWCC 4 cut(s) 243, 321, 411, 454
BmeT110I CYCGRG 3 cut(s) 269, 414, 494
BmgBI CACGTC 2 cut(s) 40, 331
BmgT120I GGNCC 6 cut(s) 243, 321, 411, 423, 454, 477
BmiI GGNNCC 4 cut(s) 244, 413, 425, 456
BmrFI CCNGG 9 cut(s) 226, 240, 365, 415, 416, 447, 476, 546, 594
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpuMI CCSGG 8 cut(s) 240, 365, 415, 416, 447, 476, 546, 594
BsaHI GRCGYC 1 cut(s) 584
BsaJI CCNNGG 5 cut(s) 225, 239, 414, 415, 593
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 668, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 420, 463
Bse118I RCCGGY 2 cut(s) 313, 601
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 5 cut(s) 225, 239, 414, 415, 593
BseGI GGATG 1 cut(s) 176
BseLI CCNNNNNNNGG 3 cut(s) 370, 420, 463
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 3 cut(s) 414, 585, 603
BseYI CCCAGC 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 199
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 424, 479
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 5 cut(s) 276, 293, 495, 581, 783
BsiHKCI CYCGRG 3 cut(s) 269, 414, 494
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 3 cut(s) 370, 420, 463
BsmAI GTCTC 1 cut(s) 695
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 2 cut(s) 424, 479
BsoBI CYCGRG 3 cut(s) 269, 414, 494
Bsp1286I GDGCHC 6 cut(s) 276, 293, 495, 546, 581, 783
Bsp143I GATC 2 cut(s) 72, 82
BspACI CCGC 8 cut(s) 8, 11, 96, 197, 205, 311, 467, 574
BspANI GGCC 2 cut(s) 424, 479
BspFNI CGCG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 715
BspLI GGNNCC 4 cut(s) 244, 413, 425, 456
BspQI GCTCTTC 1 cut(s) 483
BsrBI CCGCTC 2 cut(s) 207, 574
BsrFI RCCGGY 2 cut(s) 313, 601
BssAI RCCGGY 2 cut(s) 313, 601
BssECI CCNNGG 5 cut(s) 225, 239, 414, 415, 593
BssMI GATC 2 cut(s) 72, 82
BssNI GRCGYC 1 cut(s) 584
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 3 cut(s) 325, 340, 637
Bst6I CTCTTC 3 cut(s) 122, 170, 483
BstACI GRCGYC 1 cut(s) 584
BstC8I GCNNGC 3 cut(s) 219, 603, 647
BstF5I GGATG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 2 cut(s) 201, 356
BstKTI GATC 2 cut(s) 75, 85
BstMAI GTCTC 1 cut(s) 695
BstMBI GATC 2 cut(s) 72, 82
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 10, 476, 719
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 9 cut(s) 224, 238, 363, 413, 414, 445, 474, 544, 592
BstSLI GKGCMC 1 cut(s) 546
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 414, 585, 603
BsuI GTATCC 1 cut(s) 600
BsuRI GGCC 2 cut(s) 424, 479
BtrI CACGTC 2 cut(s) 40, 331
BtsCI GGATG 1 cut(s) 176
Cac8I GCNNGC 3 cut(s) 219, 603, 647
CciI TCATGA 1 cut(s) 715
CfoI GCGC 2 cut(s) 201, 356
Cfr10I RCCGGY 2 cut(s) 313, 601
Cfr13I GGNCC 6 cut(s) 243, 321, 411, 423, 454, 477
Cfr9I CCCGGG 1 cut(s) 414
CpoI CGGWCCG 1 cut(s) 321
CseI GACGC 3 cut(s) 394, 573, 638
Csp6I GTAC 1 cut(s) 77
CspI CGGWCCG 1 cut(s) 321
CviAII CATG 3 cut(s) 680, 716, 776
CviQI GTAC 1 cut(s) 77
DpnI GATC 2 cut(s) 74, 84
DpnII GATC 2 cut(s) 72, 82
DrdI GACNNNNNNGTC 1 cut(s) 404
DseDI GACNNNNNNGTC 1 cut(s) 404
Eam1104I CTCTTC 3 cut(s) 122, 170, 483
EarI CTCTTC 3 cut(s) 122, 170, 483
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 5 cut(s) 274, 291, 493, 579, 781
Eco24I GRGCYC 5 cut(s) 276, 293, 495, 581, 783
Eco47I GGWCC 4 cut(s) 243, 321, 411, 454
Eco53kI GAGCTC 5 cut(s) 274, 291, 493, 579, 781
Eco88I CYCGRG 3 cut(s) 269, 414, 494
EcoICRI GAGCTC 5 cut(s) 274, 291, 493, 579, 781
EcoO109I RGGNCCY 3 cut(s) 411, 423, 454
EcoRII CCWGG 1 cut(s) 224
EcoT38I GRGCYC 5 cut(s) 276, 293, 495, 581, 783
FaeI CATG 3 cut(s) 683, 719, 779
FaiI YATR 7 cut(s) 461, 555, 681, 687, 717, 777, 790
FaqI GGGAC 1 cut(s) 256
FatI CATG 3 cut(s) 679, 715, 775
FauI CCCGC 2 cut(s) 204, 318
Fnu4HI GCNGC 5 cut(s) 11, 403, 468, 599, 617
FokI GGATG 1 cut(s) 163
FriOI GRGCYC 5 cut(s) 276, 293, 495, 581, 783
Fsp4HI GCNGC 5 cut(s) 11, 403, 468, 599, 617
FspBI CTAG 1 cut(s) 296
GlaI GCGC 2 cut(s) 200, 355
GluI GCNGC 5 cut(s) 11, 403, 468, 599, 617
GsaI CCCAGC 1 cut(s) 385
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 2 cut(s) 424, 479
HgaI GACGC 3 cut(s) 394, 573, 638
HhaI GCGC 2 cut(s) 201, 356
Hin1I GRCGYC 1 cut(s) 584
Hin1II CATG 3 cut(s) 683, 719, 779
Hin6I GCGC 2 cut(s) 199, 354
HinP1I GCGC 2 cut(s) 199, 354
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 192, 212, 302, 692, 764
Hpy166II GTNNAC 4 cut(s) 43, 256, 328, 628
Hpy188I TCNGA 5 cut(s) 211, 280, 321, 397, 433
Hpy188III TCNNGA 8 cut(s) 70, 409, 521, 664, 716, 733, 745, 761
Hpy8I GTNNAC 4 cut(s) 43, 256, 328, 628
Hpy99I CGWCG 2 cut(s) 335, 589
HpyAV CCTTC 2 cut(s) 275, 556
HpyCH4III ACNGT 3 cut(s) 325, 340, 637
HpyCH4IV ACGT 3 cut(s) 39, 252, 330
HpyCH4V TGCA 1 cut(s) 619
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 476, 719
HpySE526I ACGT 3 cut(s) 39, 252, 330
Hsp92I GRCGYC 1 cut(s) 584
Hsp92II CATG 3 cut(s) 683, 719, 779
HspAI GCGC 2 cut(s) 199, 354
KroI GCCGGC 1 cut(s) 601
KroNI GCCGGC 1 cut(s) 603
Kzo9I GATC 2 cut(s) 72, 82
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 6 cut(s) 72, 212, 296, 571, 576, 676
Lsp1109I GCAGC 3 cut(s) 414, 585, 603
MaeI CTAG 1 cut(s) 296
MaeII ACGT 3 cut(s) 39, 252, 330
MaeIII GTNAC 4 cut(s) 29, 334, 608, 664
MalI GATC 2 cut(s) 74, 84
MbiI CCGCTC 2 cut(s) 207, 574
MboI GATC 2 cut(s) 72, 82
MboII GAAGA 5 cut(s) 109, 157, 448, 500, 547
MhlI GDGCHC 6 cut(s) 276, 293, 495, 546, 581, 783
MluCI AATT 2 cut(s) 169, 784
MlyI GAGTC 2 cut(s) 206, 296
MmeI TCCRAC 3 cut(s) 234, 411, 465
MroNI GCCGGC 1 cut(s) 601
MroXI GAANNNNTTC 1 cut(s) 740
MslI CAYNNNNRTG 1 cut(s) 684
MspR9I CCNGG 9 cut(s) 226, 240, 365, 415, 416, 447, 476, 546, 594
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 1 cut(s) 226
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 10, 476, 719
NaeI GCCGGC 1 cut(s) 603
NciI CCSGG 8 cut(s) 240, 365, 415, 416, 447, 476, 546, 594
NdeII GATC 2 cut(s) 72, 82
NgoMIV GCCGGC 1 cut(s) 601
NlaIII CATG 3 cut(s) 683, 719, 779
NlaIV GGNNCC 4 cut(s) 244, 413, 425, 456
NmeAIII GCCGAG 1 cut(s) 560
NmuCI GTSAC 2 cut(s) 334, 664
PaeR7I CTCGAG 1 cut(s) 269
PagI TCATGA 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 619
PdiI GCCGGC 1 cut(s) 603
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 3 cut(s) 192, 692, 764
PkrI GCNGC 5 cut(s) 12, 404, 469, 600, 618
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 206, 296
PpsI GAGTC 2 cut(s) 206, 296
PpuMI RGGWCCY 2 cut(s) 411, 454
Psp124BI GAGCTC 5 cut(s) 276, 293, 495, 581, 783
Psp5II RGGWCCY 2 cut(s) 411, 454
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 381
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 4 cut(s) 244, 413, 425, 456
PspPI GGNCC 6 cut(s) 243, 321, 411, 423, 454, 477
PspPPI RGGWCCY 2 cut(s) 411, 454
PspXI VCTCGAGB 1 cut(s) 269
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 684
Rsr2I CGGWCCG 1 cut(s) 321
RsrII CGGWCCG 1 cut(s) 321
SacI GAGCTC 5 cut(s) 276, 293, 495, 581, 783
SapI GCTCTTC 1 cut(s) 483
SatI GCNGC 5 cut(s) 11, 403, 468, 599, 617
Sau3AI GATC 2 cut(s) 72, 82
Sau96I GGNCC 6 cut(s) 243, 321, 411, 423, 454, 477
SchI GAGTC 2 cut(s) 206, 296
ScrFI CCNGG 9 cut(s) 226, 240, 365, 415, 416, 447, 476, 546, 594
SduI GDGCHC 6 cut(s) 276, 293, 495, 546, 581, 783
Sfr274I CTCGAG 1 cut(s) 269
SinI GGWCC 4 cut(s) 243, 321, 411, 454
SlaI CTCGAG 1 cut(s) 269
SmaI CCCGGG 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 2 cut(s) 169, 784
SsiI CCGC 8 cut(s) 8, 11, 96, 197, 205, 311, 467, 574
SspMI CTAG 1 cut(s) 296
SstI GAGCTC 5 cut(s) 276, 293, 495, 581, 783
StyD4I CCNGG 9 cut(s) 224, 238, 363, 413, 414, 445, 474, 544, 592
TaaI ACNGT 3 cut(s) 325, 340, 637
TaiI ACGT 3 cut(s) 42, 255, 333
TaqI TCGA 5 cut(s) 270, 305, 375, 500, 767
TasI AATT 2 cut(s) 169, 784
TauI GCSGC 2 cut(s) 13, 470
TfiI GAWTC 3 cut(s) 192, 692, 764
TseFI GTSAC 2 cut(s) 334, 664
TseI GCWGC 3 cut(s) 402, 598, 616
Tsp45I GTSAC 2 cut(s) 334, 664
TspDTI ATGAA 2 cut(s) 455, 777
TspGWI ACGGA 2 cut(s) 94, 683
TspMI CCCGGG 1 cut(s) 414
VpaK11BI GGWCC 4 cut(s) 243, 321, 411, 454
XhoI CTCGAG 1 cut(s) 269
XmaI CCCGGG 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.