Rmu_sc0010366.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010366.1
OG0014384
Physical Location & Seq
Forward (+)
16650 .. 17819
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010366.1_g000004.1.cds

Sequence Viewer

Length: 972 bp
atggttccttccgtgctaacttcgtgtggattactatggccaccaccaccaccaccaccagaccaccaccacccatccccaatcgttgacatgccaccgccgcaacaaccaccaatcagtaacagccacgtcaacctccccgaaacccccaacaagctcccgatcgtacccgatctcctcctctccgccctctccgtctttttcctcttctcctcctcctcctcctcctccaaaatcaccctcctccccaaaaccccactcttcaatttcccatcctaccctcgccgattcgtcaaaatccccacaatgtcgctccaccaccaccaccgccaccgggacttcgccacgccgcaatcgctctccgattggctcaagccgcgcctccgctccgactcgctcgcctcgtggggcgtgaagccggggaccaagaacgtccacaacctctggctcgagctctccgaaggcgagagctccctagccgactcgaccccgccggttcggaccgtccacgtcgtcacggttcgggtcatcggcgctcaaagccgggtcttggtcgaagcccagcaagagttatcggacggcagcgtcaggacccgggggaggcccctgtcggagaagatgaagcccggcgaggaccccatatcggcggcgaaccgggccgtgttggaagagctcgggtcgatactaaacgggtcgggtcaagacggcattgtgaagattgtgcccggttcgtatagcaagaaggtggaggagcggagctcggcgtcgtatccggggttgccggcgtgttacgagctgcattcggtggacgctacggtggagggcttgccggaggaggatttcgtgacggaggaggagcatgagtatgccgattccggcgagacaagtgttgctcatgaggctgtgtctgtcaagaagcatttctggaaatgggttagtcttgattcgataaaccatgagctcaattcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

323

Amino Acids

35.5

Weight (kDa)

6.05

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccBSI CCGCTC 2 cut(s) 387, 754
AccII CGCG 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 764
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 4 cut(s) 334, 550, 600, 643
AgsI TTSAA 1 cut(s) 265
AjiI CACGTC 2 cut(s) 130, 511
AluBI AGCT 7 cut(s) 157, 454, 471, 673, 759, 796, 961
AluI AGCT 7 cut(s) 157, 454, 471, 673, 759, 796, 961
Alw21I GWGCWC 5 cut(s) 456, 473, 675, 761, 963
Alw26I GTCTC 1 cut(s) 875
Ama87I CYCGRG 3 cut(s) 449, 594, 674
AoxI GGCC 3 cut(s) 38, 602, 657
ApeKI GCWGC 2 cut(s) 582, 796
Asp700I GAANNNNTTC 1 cut(s) 920
AspLEI GCGC 2 cut(s) 381, 536
AspS9I GGNCC 6 cut(s) 423, 501, 591, 603, 634, 657
AsuC2I CCSGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 3 cut(s) 449, 594, 674
AvaII GGWCC 4 cut(s) 423, 501, 591, 634
BaeGI GKGCMC 1 cut(s) 726
BalI TGGCCA 1 cut(s) 40
BanII GRGCYC 5 cut(s) 456, 473, 675, 761, 963
BauI CACGAG 1 cut(s) 403
Bbv12I GWGCWC 5 cut(s) 456, 473, 675, 761, 963
BbvI GCAGC 2 cut(s) 594, 783
BccI CCATC 2 cut(s) 82, 280
BceAI ACGGC 3 cut(s) 595, 644, 721
BciVI GTATCC 1 cut(s) 780
BcnI CCSGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 537
BfuI GTATCC 1 cut(s) 780
BisI GCNGC 6 cut(s) 101, 350, 377, 583, 648, 797
BlsI GCNGC 6 cut(s) 102, 351, 378, 584, 649, 798
Bme1390I CCNGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
Bme18I GGWCC 4 cut(s) 423, 501, 591, 634
BmeT110I CYCGRG 3 cut(s) 449, 594, 674
BmgBI CACGTC 2 cut(s) 130, 511
BmgT120I GGNCC 6 cut(s) 423, 501, 591, 603, 634, 657
BmiI GGNNCC 5 cut(s) 6, 424, 593, 605, 636
BmrFI CCNGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
BplI GAGNNNNNCTC 2 cut(s) 743, 775
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
BsaHI GRCGYC 1 cut(s) 764
BsaJI CCNNGG 4 cut(s) 419, 594, 595, 773
BsaXI ACNNNNNCTCC 4 cut(s) 159, 189, 848, 878
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 550, 600, 643
Bse118I RCCGGY 2 cut(s) 493, 781
BseDI CCNNGG 4 cut(s) 419, 594, 595, 773
BseGI GGATG 2 cut(s) 74, 272
BseLI CCNNNNNNNGG 4 cut(s) 334, 550, 600, 643
BseSI GKGCMC 1 cut(s) 726
BseXI GCAGC 2 cut(s) 594, 783
BseYI CCCAGC 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 379
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 3 cut(s) 40, 604, 659
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 5 cut(s) 456, 473, 675, 761, 963
BsiHKCI CYCGRG 3 cut(s) 449, 594, 674
BslFI GGGAC 2 cut(s) 350, 436
BslI CCNNNNNNNGG 4 cut(s) 334, 550, 600, 643
BsmAI GTCTC 1 cut(s) 875
BsmFI GGGAC 2 cut(s) 350, 436
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 3 cut(s) 40, 604, 659
BsoBI CYCGRG 3 cut(s) 449, 594, 674
Bsp1286I GDGCHC 6 cut(s) 456, 473, 675, 726, 761, 963
Bsp143I GATC 2 cut(s) 162, 172
BspANI GGCC 3 cut(s) 40, 604, 659
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 895
BspLI GGNNCC 5 cut(s) 6, 424, 593, 605, 636
BspQI GCTCTTC 1 cut(s) 663
BsrBI CCGCTC 2 cut(s) 387, 754
BsrFI RCCGGY 2 cut(s) 493, 781
BssAI RCCGGY 2 cut(s) 493, 781
BssECI CCNNGG 4 cut(s) 419, 594, 595, 773
BssMI GATC 2 cut(s) 162, 172
BssNI GRCGYC 1 cut(s) 764
BssSI CACGAG 1 cut(s) 403
Bst2BI CACGAG 1 cut(s) 403
Bst4CI ACNGT 3 cut(s) 505, 520, 817
Bst6I CTCTTC 3 cut(s) 212, 266, 663
BstACI GRCGYC 1 cut(s) 764
BstC8I GCNNGC 3 cut(s) 399, 783, 827
BstF5I GGATG 2 cut(s) 74, 272
BstFNI CGCG 1 cut(s) 379
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 2 cut(s) 381, 536
BstKTI GATC 2 cut(s) 165, 175
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 2 cut(s) 162, 172
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 6 cut(s) 100, 355, 376, 540, 656, 899
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 9 cut(s) 333, 418, 543, 593, 594, 625, 654, 724, 772
BstSLI GKGCMC 1 cut(s) 726
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 594, 783
BsuI GTATCC 1 cut(s) 780
BsuRI GGCC 3 cut(s) 40, 604, 659
BtrI CACGTC 2 cut(s) 130, 511
BtsCI GGATG 2 cut(s) 74, 272
Cac8I GCNNGC 3 cut(s) 399, 783, 827
CciI TCATGA 1 cut(s) 895
CfoI GCGC 2 cut(s) 381, 536
Cfr10I RCCGGY 2 cut(s) 493, 781
Cfr13I GGNCC 6 cut(s) 423, 501, 591, 603, 634, 657
Cfr9I CCCGGG 1 cut(s) 594
CpoI CGGWCCG 1 cut(s) 501
CseI GACGC 3 cut(s) 574, 753, 818
Csp6I GTAC 1 cut(s) 167
CspI CGGWCCG 1 cut(s) 501
CviAII CATG 4 cut(s) 91, 860, 896, 956
CviQI GTAC 1 cut(s) 167
DpnI GATC 2 cut(s) 164, 174
DpnII GATC 2 cut(s) 162, 172
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 1 cut(s) 38
Eam1104I CTCTTC 3 cut(s) 212, 266, 663
EarI CTCTTC 3 cut(s) 212, 266, 663
EciI GGCGGA 1 cut(s) 175
Ecl136II GAGCTC 5 cut(s) 454, 471, 673, 759, 961
Eco24I GRGCYC 5 cut(s) 456, 473, 675, 761, 963
Eco47I GGWCC 4 cut(s) 423, 501, 591, 634
Eco53kI GAGCTC 5 cut(s) 454, 471, 673, 759, 961
Eco88I CYCGRG 3 cut(s) 449, 594, 674
EcoICRI GAGCTC 5 cut(s) 454, 471, 673, 759, 961
EcoO109I RGGNCCY 3 cut(s) 591, 603, 634
EcoT38I GRGCYC 5 cut(s) 456, 473, 675, 761, 963
FaeI CATG 4 cut(s) 94, 863, 899, 959
FaiI YATR 9 cut(s) 37, 92, 641, 735, 861, 867, 897, 957, 970
FaqI GGGAC 2 cut(s) 350, 436
FatI CATG 4 cut(s) 90, 859, 895, 955
FauI CCCGC 1 cut(s) 498
Fnu4HI GCNGC 6 cut(s) 101, 350, 377, 583, 648, 797
FokI GGATG 2 cut(s) 61, 259
FriOI GRGCYC 5 cut(s) 456, 473, 675, 761, 963
Fsp4HI GCNGC 6 cut(s) 101, 350, 377, 583, 648, 797
FspBI CTAG 1 cut(s) 476
GlaI GCGC 2 cut(s) 380, 535
GluI GCNGC 6 cut(s) 101, 350, 377, 583, 648, 797
GsaI CCCAGC 1 cut(s) 565
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 3 cut(s) 40, 604, 659
HgaI GACGC 3 cut(s) 574, 753, 818
HhaI GCGC 2 cut(s) 381, 536
Hin1I GRCGYC 1 cut(s) 764
Hin1II CATG 4 cut(s) 94, 863, 899, 959
Hin6I GCGC 2 cut(s) 379, 534
HinP1I GCGC 2 cut(s) 379, 534
HincII GTYRAC 2 cut(s) 88, 133
HindII GTYRAC 2 cut(s) 88, 133
HinfI GANTC 5 cut(s) 288, 392, 482, 872, 944
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 5 cut(s) 88, 133, 436, 508, 808
Hpy188I TCNGA 6 cut(s) 364, 391, 460, 501, 577, 613
Hpy188III TCNNGA 8 cut(s) 160, 589, 701, 844, 896, 913, 925, 941
Hpy8I GTNNAC 5 cut(s) 88, 133, 436, 508, 808
Hpy99I CGWCG 2 cut(s) 515, 769
HpyAV CCTTC 3 cut(s) 18, 455, 736
HpyCH4III ACNGT 3 cut(s) 505, 520, 817
HpyCH4IV ACGT 3 cut(s) 129, 432, 510
HpyCH4V TGCA 1 cut(s) 799
HpyF10VI GCNNNNNNNGC 6 cut(s) 100, 355, 376, 540, 656, 899
HpySE526I ACGT 3 cut(s) 129, 432, 510
Hsp92I GRCGYC 1 cut(s) 764
Hsp92II CATG 4 cut(s) 94, 863, 899, 959
HspAI GCGC 2 cut(s) 379, 534
KroI GCCGGC 1 cut(s) 781
KroNI GCCGGC 1 cut(s) 783
Kzo9I GATC 2 cut(s) 162, 172
LguI GCTCTTC 1 cut(s) 663
LmnI GCTCC 7 cut(s) 162, 318, 392, 476, 751, 756, 856
Lsp1109I GCAGC 2 cut(s) 594, 783
MaeI CTAG 1 cut(s) 476
MaeII ACGT 3 cut(s) 129, 432, 510
MaeIII GTNAC 4 cut(s) 119, 514, 788, 844
MalI GATC 2 cut(s) 164, 174
MbiI CCGCTC 2 cut(s) 387, 754
MboI GATC 2 cut(s) 162, 172
MboII GAAGA 5 cut(s) 199, 253, 628, 680, 727
MhlI GDGCHC 6 cut(s) 456, 473, 675, 726, 761, 963
MlsI TGGCCA 1 cut(s) 40
MluCI AATT 2 cut(s) 265, 964
MluNI TGGCCA 1 cut(s) 40
MlyI GAGTC 2 cut(s) 386, 476
MmeI TCCRAC 3 cut(s) 414, 591, 645
Mox20I TGGCCA 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 781
MroXI GAANNNNTTC 1 cut(s) 920
MscI TGGCCA 1 cut(s) 40
MslI CAYNNNNRTG 1 cut(s) 864
Msp20I TGGCCA 1 cut(s) 40
MspR9I CCNGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
Mva1269I GAATGC 1 cut(s) 799
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 6 cut(s) 100, 355, 376, 540, 656, 899
NaeI GCCGGC 1 cut(s) 783
NciI CCSGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
NdeII GATC 2 cut(s) 162, 172
NgoMIV GCCGGC 1 cut(s) 781
NlaIII CATG 4 cut(s) 94, 863, 899, 959
NlaIV GGNNCC 5 cut(s) 6, 424, 593, 605, 636
NmeAIII GCCGAG 1 cut(s) 740
NmuCI GTSAC 2 cut(s) 514, 844
NspI RCATGY 1 cut(s) 94
PaeR7I CTCGAG 1 cut(s) 449
PagI TCATGA 1 cut(s) 895
PciSI GCTCTTC 1 cut(s) 663
PcsI WCGNNNNNNNCGW 2 cut(s) 401, 456
PctI GAATGC 1 cut(s) 799
PdiI GCCGGC 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 3 cut(s) 288, 872, 944
PkrI GCNGC 6 cut(s) 102, 351, 378, 584, 649, 798
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 386, 476
PpsI GAGTC 2 cut(s) 386, 476
PpuMI RGGWCCY 2 cut(s) 591, 634
Psp124BI GAGCTC 5 cut(s) 456, 473, 675, 761, 963
Psp5II RGGWCCY 2 cut(s) 591, 634
PspFI CCCAGC 1 cut(s) 561
PspN4I GGNNCC 5 cut(s) 6, 424, 593, 605, 636
PspPI GGNCC 6 cut(s) 423, 501, 591, 603, 634, 657
PspPPI RGGWCCY 2 cut(s) 591, 634
PspXI VCTCGAGB 1 cut(s) 449
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 864
Rsr2I CGGWCCG 1 cut(s) 501
RsrII CGGWCCG 1 cut(s) 501
SacI GAGCTC 5 cut(s) 456, 473, 675, 761, 963
SapI GCTCTTC 1 cut(s) 663
SatI GCNGC 6 cut(s) 101, 350, 377, 583, 648, 797
Sau3AI GATC 2 cut(s) 162, 172
Sau96I GGNCC 6 cut(s) 423, 501, 591, 603, 634, 657
SchI GAGTC 2 cut(s) 386, 476
ScrFI CCNGG 9 cut(s) 335, 420, 545, 595, 596, 627, 656, 726, 774
SduI GDGCHC 6 cut(s) 456, 473, 675, 726, 761, 963
Sfr274I CTCGAG 1 cut(s) 449
SinI GGWCC 4 cut(s) 423, 501, 591, 634
SlaI CTCGAG 1 cut(s) 449
SmaI CCCGGG 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 864
SmlI CTYRAG 2 cut(s) 371, 449
SmoI CTYRAG 2 cut(s) 371, 449
Sse9I AATT 2 cut(s) 265, 964
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 5 cut(s) 456, 473, 675, 761, 963
StyD4I CCNGG 9 cut(s) 333, 418, 543, 593, 594, 625, 654, 724, 772
TaaI ACNGT 3 cut(s) 505, 520, 817
TaiI ACGT 3 cut(s) 132, 435, 513
TaqI TCGA 5 cut(s) 450, 485, 555, 680, 947
TasI AATT 2 cut(s) 265, 964
TauI GCSGC 4 cut(s) 103, 352, 379, 650
TfiI GAWTC 3 cut(s) 288, 872, 944
TseFI GTSAC 2 cut(s) 514, 844
TseI GCWGC 2 cut(s) 582, 796
Tsp45I GTSAC 2 cut(s) 514, 844
TspDTI ATGAA 2 cut(s) 635, 957
TspGWI ACGGA 2 cut(s) 184, 863
TspMI CCCGGG 1 cut(s) 594
VpaK11BI GGWCC 4 cut(s) 423, 501, 591, 634
XceI RCATGY 1 cut(s) 94
XhoI CTCGAG 1 cut(s) 449
XmaI CCCGGG 1 cut(s) 594
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.