MD07G1299300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014384
Physical Location & Seq
Reverse (-)
35848144 .. 35848968
825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1299300.v1.1.491

Sequence Viewer

Length: 825 bp
ATGCCGCCGCCGCCGCAACAACCGATCTGCAACAACCTCCCAACGCTACCCGATCTCCTCCTGACGGCGATCTCCATCTCCTTCCTCTTCTCCTCCTCCGCCCGAGCTACCCTCCTCTCCAAAACCCCATTTTCCCATTTACCTTCCTGCCCTCGCCGCCTTTTCAAAATCCCCACCATGTCTCTCCACCACCACCCCCAGCAGCACCGCTTTGCAACCCCGCAGTCCCTCTCCGAGTGGCTCAAGCCCCGATTGCTCTCCGACTCTCTCGCCTCTTGGGGGGTCAAGCCTGGCACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTTTTTAGCCGATTCATCCCCGCCGGTTCGAACGGTTCACGTTGTCACGGTCCGGATCATCGACGATAAATCCCGGATTTTGATCGAAGCCCACCAAGAATTATCGGATGGCAGCGTCAGGAGCCGAGGCCGGCCACTGTCAGAGAAAATGAAACCCGGAGAGGACCACGAATCGGCGGCGAACAGGGCGGTTATGGAAGAGCTCGGTTCGATATTGAATTCGGCAAGCAACGGCATTGTGAAGATTGTTCCGGGTTCTTATGAGAAAAGGGTGGAGGAGCGGCATTCAATGTCGTATCCGGGCTTGCCGGCGTGTTACGTGCTGCACGCGGTGGATGCTTGGGTGGAGGGCTTGCCGGAAGGTGAGTTTTGCACCGAGGAGGAGCAGGAGTATCCGAATGGCGGAGCGATGAGCATTGCCCACGAGGCTGTGTCTGTCAAGAAGCATTTTTGGAAATGGGTTAGTCTTGATTCCATAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

275

Amino Acids

30.45

Weight (kDa)

6.35

Isoelectric Point (pI)

59.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccBSI CCGCTC 1 cut(s) 622
AccII CGCG 1 cut(s) 671
AccIII TCCGGA 1 cut(s) 393
AclWI GGATC 1 cut(s) 404
AcoI YGGCCR 1 cut(s) 473
AcsI RAATTY 1 cut(s) 559
AdeI CACNNNGTG 1 cut(s) 673
AfiI CCNNNNNNNGG 4 cut(s) 64, 279, 514, 743
AgsI TTSAA 3 cut(s) 166, 559, 630
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 107, 325, 342, 544
AluI AGCT 4 cut(s) 107, 325, 342, 544
Alw21I GWGCWC 2 cut(s) 327, 546
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 1 cut(s) 404
Ama87I CYCGRG 2 cut(s) 102, 320
Aor13HI TCCGGA 1 cut(s) 393
AoxI GGCC 2 cut(s) 469, 473
ApeKI GCWGC 3 cut(s) 202, 453, 664
ApoI RAATTY 1 cut(s) 559
AspS9I GGNCC 2 cut(s) 391, 505
AsuC2I CCSGG 4 cut(s) 415, 498, 594, 642
AsuHPI GGTGA 1 cut(s) 716
AsuII TTCGAA 1 cut(s) 370
AvaI CYCGRG 2 cut(s) 102, 320
AvaII GGWCC 2 cut(s) 391, 505
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 2 cut(s) 327, 546
BauI CACGAG 1 cut(s) 764
Bbv12I GWGCWC 2 cut(s) 327, 546
BbvI GCAGC 3 cut(s) 214, 465, 651
BccI CCATC 2 cut(s) 83, 443
BceAI ACGGC 2 cut(s) 81, 589
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 2 cut(s) 648, 744
BcnI CCSGG 4 cut(s) 415, 498, 594, 642
BcoDI GTCTC 1 cut(s) 186
BfuI GTATCC 2 cut(s) 648, 744
BglI GCCNNNNNGGC 1 cut(s) 767
Bme1390I CCNGG 5 cut(s) 291, 415, 498, 594, 642
Bme18I GGWCC 2 cut(s) 391, 505
BmeT110I CYCGRG 2 cut(s) 102, 320
BmgT120I GGNCC 2 cut(s) 391, 505
BmiI GGNNCC 2 cut(s) 295, 464
BmrFI CCNGG 5 cut(s) 291, 415, 498, 594, 642
BmsI GCATC 1 cut(s) 667
BplI GAGNNNNNCTC 2 cut(s) 96, 128
Bpu14I TTCGAA 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 4 cut(s) 415, 498, 594, 642
BsaAI YACGTR 1 cut(s) 661
BsaBI GATNNNNATC 2 cut(s) 74, 422
BsaJI CCNNGG 2 cut(s) 466, 717
BsaWI WCCGGW 1 cut(s) 393
BsaXI ACNNNNNCTCC 4 cut(s) 39, 69, 716, 746
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 279, 514, 743
Bse118I RCCGGY 3 cut(s) 364, 471, 649
Bse3DI GCAATG 1 cut(s) 756
Bse8I GATNNNNATC 2 cut(s) 74, 422
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 466, 717
BseGI GGATG 3 cut(s) 356, 454, 682
BseJI GATNNNNATC 2 cut(s) 74, 422
BseLI CCNNNNNNNGG 4 cut(s) 64, 279, 514, 743
BseMI GCAATG 1 cut(s) 756
BseRI GAGGAG 7 cut(s) 47, 82, 85, 104, 632, 734, 737
BseXI GCAGC 3 cut(s) 214, 465, 651
BseYI CCCAGC 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 1 cut(s) 671
BshFI GGCC 2 cut(s) 471, 475
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 2 cut(s) 327, 546
BsiHKCI CYCGRG 2 cut(s) 102, 320
BsiSI CCGG 9 cut(s) 365, 394, 415, 472, 498, 593, 641, 650, 698
BslFI GGGAC 1 cut(s) 211
BslI CCNNNNNNNGG 4 cut(s) 64, 279, 514, 743
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 211
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 2 cut(s) 471, 475
BsoBI CYCGRG 2 cut(s) 102, 320
Bsp119I TTCGAA 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 327, 546
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 5 cut(s) 24, 52, 69, 396, 423
BspANI GGCC 2 cut(s) 471, 475
BspEI TCCGGA 1 cut(s) 393
BspFNI CGCG 1 cut(s) 671
BspLI GGNNCC 2 cut(s) 295, 464
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 534
BspT104I TTCGAA 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 622
BsrDI GCAATG 1 cut(s) 756
BsrFI RCCGGY 3 cut(s) 364, 471, 649
BssAI RCCGGY 3 cut(s) 364, 471, 649
BssECI CCNNGG 2 cut(s) 466, 717
BssMI GATC 5 cut(s) 24, 52, 69, 396, 423
BssSI CACGAG 1 cut(s) 764
Bst2BI CACGAG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 376, 391, 480
Bst6I CTCTTC 2 cut(s) 92, 534
BstBAI YACGTR 1 cut(s) 661
BstBI TTCGAA 1 cut(s) 370
BstC8I GCNNGC 6 cut(s) 473, 568, 647, 651, 669, 695
BstF5I GGATG 3 cut(s) 356, 454, 682
BstFNI CGCG 1 cut(s) 671
BstKTI GATC 5 cut(s) 27, 55, 72, 399, 426
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 5 cut(s) 24, 52, 69, 396, 423
BstMWI GCNNNNNNNGC 8 cut(s) 10, 13, 156, 253, 462, 527, 677, 767
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 5 cut(s) 289, 413, 496, 592, 640
BstUI CGCG 1 cut(s) 671
BstV1I GCAGC 3 cut(s) 214, 465, 651
BsuI GTATCC 2 cut(s) 648, 744
BsuRI GGCC 2 cut(s) 471, 475
BtgZI GCGATG 1 cut(s) 764
BtsCI GGATG 3 cut(s) 356, 454, 682
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 6 cut(s) 473, 568, 647, 651, 669, 695
Cfr10I RCCGGY 3 cut(s) 364, 471, 649
Cfr13I GGNCC 2 cut(s) 391, 505
CpoI CGGWCCG 1 cut(s) 391
CseI GACGC 1 cut(s) 445
CspI CGGWCCG 1 cut(s) 391
CviAII CATG 1 cut(s) 178
DpnI GATC 5 cut(s) 26, 54, 71, 398, 425
DpnII GATC 5 cut(s) 24, 52, 69, 396, 423
DraIII CACNNNGTG 1 cut(s) 673
EaeI YGGCCR 1 cut(s) 473
Eam1104I CTCTTC 2 cut(s) 92, 534
EarI CTCTTC 2 cut(s) 92, 534
EciI GGCGGA 2 cut(s) 88, 759
Ecl136II GAGCTC 2 cut(s) 325, 544
Eco24I GRGCYC 2 cut(s) 327, 546
Eco47I GGWCC 2 cut(s) 391, 505
Eco53kI GAGCTC 2 cut(s) 325, 544
Eco88I CYCGRG 2 cut(s) 102, 320
EcoICRI GAGCTC 2 cut(s) 325, 544
EcoRI GAATTC 1 cut(s) 559
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 327, 546
FaeI CATG 1 cut(s) 181
FaiI YATR 4 cut(s) 179, 536, 603, 818
FaqI GGGAC 1 cut(s) 211
FatI CATG 1 cut(s) 177
FauI CCCGC 2 cut(s) 228, 369
FokI GGATG 3 cut(s) 343, 461, 689
FriOI GRGCYC 2 cut(s) 327, 546
FseI GGCCGGCC 1 cut(s) 475
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 2 cut(s) 471, 475
HapII CCGG 9 cut(s) 365, 394, 415, 472, 498, 593, 641, 650, 698
HgaI GACGC 1 cut(s) 445
Hin1II CATG 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 340
HinfI GANTC 4 cut(s) 263, 353, 512, 812
HpaII CCGG 9 cut(s) 365, 394, 415, 472, 498, 593, 641, 650, 698
HphI GGTGA 1 cut(s) 716
Hpy166II GTNNAC 2 cut(s) 307, 379
Hpy188I TCNGA 6 cut(s) 235, 262, 331, 448, 484, 738
Hpy188III TCNNGA 5 cut(s) 61, 394, 460, 781, 809
Hpy8I GTNNAC 2 cut(s) 307, 379
Hpy99I CGWCG 1 cut(s) 407
HpyAV CCTTC 4 cut(s) 91, 153, 326, 695
HpyCH4III ACNGT 3 cut(s) 376, 391, 480
HpyCH4IV ACGT 3 cut(s) 303, 381, 660
HpyCH4V TGCA 4 cut(s) 30, 215, 667, 714
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 13, 156, 253, 462, 527, 677, 767
HpySE526I ACGT 3 cut(s) 303, 381, 660
Hsp92II CATG 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 393
KroI GCCGGC 2 cut(s) 471, 649
KroNI GCCGGC 2 cut(s) 473, 651
Kzo9I GATC 5 cut(s) 24, 52, 69, 396, 423
LguI GCTCTTC 1 cut(s) 534
LmnI GCTCC 4 cut(s) 462, 619, 724, 746
Lsp1109I GCAGC 3 cut(s) 214, 465, 651
LweI GCATC 1 cut(s) 667
MaeII ACGT 3 cut(s) 303, 381, 660
MaeIII GTNAC 2 cut(s) 385, 656
MalI GATC 5 cut(s) 26, 54, 71, 398, 425
MbiI CCGCTC 1 cut(s) 622
MboI GATC 5 cut(s) 24, 52, 69, 396, 423
MboII GAAGA 3 cut(s) 79, 551, 595
MhlI GDGCHC 2 cut(s) 327, 546
MluCI AATT 3 cut(s) 440, 559, 820
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 285
MroI TCCGGA 1 cut(s) 393
MroNI GCCGGC 2 cut(s) 471, 649
MseI TTAA 1 cut(s) 823
MspI CCGG 9 cut(s) 365, 394, 415, 472, 498, 593, 641, 650, 698
MspR9I CCNGG 5 cut(s) 291, 415, 498, 594, 642
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 671
MwoI GCNNNNNNNGC 8 cut(s) 10, 13, 156, 253, 462, 527, 677, 767
NaeI GCCGGC 2 cut(s) 473, 651
NciI CCSGG 4 cut(s) 415, 498, 594, 642
NdeII GATC 5 cut(s) 24, 52, 69, 396, 423
NgoMIV GCCGGC 2 cut(s) 471, 649
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 2 cut(s) 295, 464
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 385
NspV TTCGAA 1 cut(s) 370
PaeR7I CTCGAG 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PctI GAATGC 1 cut(s) 625
PdiI GCCGGC 2 cut(s) 473, 651
PfeI GAWTC 3 cut(s) 353, 512, 812
PfoI TCCNGGA 1 cut(s) 413
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 661
Psp124BI GAGCTC 2 cut(s) 327, 546
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 295, 464
PspPI GGNCC 2 cut(s) 391, 505
PspXI VCTCGAGB 1 cut(s) 320
RigI GGCCGGCC 1 cut(s) 475
Rsr2I CGGWCCG 1 cut(s) 391
RsrII CGGWCCG 1 cut(s) 391
SacI GAGCTC 2 cut(s) 327, 546
SapI GCTCTTC 1 cut(s) 534
SaqAI TTAA 1 cut(s) 823
Sau3AI GATC 5 cut(s) 24, 52, 69, 396, 423
Sau96I GGNCC 2 cut(s) 391, 505
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 5 cut(s) 291, 415, 498, 594, 642
SduI GDGCHC 2 cut(s) 327, 546
SfaNI GCATC 1 cut(s) 667
Sfr274I CTCGAG 1 cut(s) 320
SfuI TTCGAA 1 cut(s) 370
SinI GGWCC 2 cut(s) 391, 505
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 242, 320
SmoI CTYRAG 2 cut(s) 242, 320
Sse9I AATT 3 cut(s) 440, 559, 820
SstI GAGCTC 2 cut(s) 327, 546
StyD4I CCNGG 5 cut(s) 289, 413, 496, 592, 640
TaaI ACNGT 3 cut(s) 376, 391, 480
TaiI ACGT 3 cut(s) 306, 384, 663
TaqI TCGA 5 cut(s) 321, 370, 402, 426, 551
TasI AATT 3 cut(s) 440, 559, 820
TauI GCSGC 7 cut(s) 7, 10, 13, 16, 159, 521, 625
TfiI GAWTC 3 cut(s) 353, 512, 812
Tru1I TTAA 1 cut(s) 823
Tru9I TTAA 1 cut(s) 823
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 3 cut(s) 202, 453, 664
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 2 cut(s) 345, 506
TspRI CASTG 1 cut(s) 483
VpaK11BI GGWCC 2 cut(s) 391, 505
XapI RAATTY 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.