RLG00000026150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014384
Physical Location & Seq
Forward (+)
854665 .. 856324
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026150

Sequence Viewer

Length: 999 bp
ATGGCTGAGTTTACTTATTACTTGGTCGTTGATTCTGATGGGATGCGATTACTATGGCCGCCACCGCCACCGCCACCACCACACCACCACTACCACCCATCCCCAGTCGTTGACATGCCACCGCCGCAACAACCACCAATCAGTAACAGCCACGTCAACCTCCCCGAAACCCCCAACAAGCTCCCGATCGTACCCGATCTCCTCCTCTCTGCCCTCTCCGTCTTTTTCCTCTTCTCCTCCTCCTCCTCCGCCTCCTCCAAAATCACCCTCCTCCCCAAAACCCCACTCTTCAATTTCCCATCCTACCCTCGCCGATTCGTCAAAATCCCCACAATGTCGCTCCACCAGCACCACCAGCACCGGAACTTCGCCACGCCGCAATCGCTCTCCGATTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAAAGCTCCCTAGCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGCCTTAGTCGAAGCCGAGCAAGAATTATCGGACGGCAGCGTCAGGAGCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCTGCGAGGACCCCATATCGGCGGCGAACAGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCATTGTGAAGATTGTACCCGATTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGATGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATTCCGATTCCGGCGAGAGAAGTGTTGCTAATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCGATAAACCATGAGCTCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

333

Amino Acids

36.85

Weight (kDa)

5.83

Isoelectric Point (pI)

57.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 611
AccBSI CCGCTC 2 cut(s) 414, 781
AccII CGCG 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 791
AfaI GTAC 2 cut(s) 192, 750
AfiI CCNNNNNNNGG 1 cut(s) 670
AgsI TTSAA 1 cut(s) 292
AjiI CACGTC 2 cut(s) 154, 538
AluBI AGCT 7 cut(s) 181, 481, 498, 700, 786, 823, 988
AluI AGCT 7 cut(s) 181, 481, 498, 700, 786, 823, 988
Alw21I GWGCWC 4 cut(s) 483, 702, 788, 990
Ama87I CYCGRG 2 cut(s) 476, 701
AoxI GGCC 4 cut(s) 56, 573, 629, 684
ApeKI GCWGC 2 cut(s) 609, 823
Asp700I GAANNNNTTC 1 cut(s) 947
AspLEI GCGC 2 cut(s) 408, 563
AspS9I GGNCC 6 cut(s) 450, 528, 573, 630, 661, 684
AsuC2I CCSGG 4 cut(s) 447, 572, 623, 801
AsuHPI GGTGA 1 cut(s) 256
AvaI CYCGRG 2 cut(s) 476, 701
AvaII GGWCC 3 cut(s) 450, 528, 661
BanII GRGCYC 4 cut(s) 483, 702, 788, 990
BauI CACGAG 1 cut(s) 430
Bbv12I GWGCWC 4 cut(s) 483, 702, 788, 990
BbvI GCAGC 2 cut(s) 621, 810
BccI CCATC 3 cut(s) 32, 106, 307
BceAI ACGGC 3 cut(s) 622, 671, 748
BciVI GTATCC 1 cut(s) 807
BcnI CCSGG 4 cut(s) 447, 572, 623, 801
BfaI CTAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 564
BfuI GTATCC 1 cut(s) 807
BisI GCNGC 7 cut(s) 59, 125, 377, 404, 610, 675, 824
BlsI GCNGC 7 cut(s) 60, 126, 378, 405, 611, 676, 825
Bme1390I CCNGG 4 cut(s) 447, 572, 623, 801
Bme18I GGWCC 3 cut(s) 450, 528, 661
BmeT110I CYCGRG 2 cut(s) 476, 701
BmgBI CACGTC 2 cut(s) 154, 538
BmgT120I GGNCC 6 cut(s) 450, 528, 573, 630, 661, 684
BmiI GGNNCC 4 cut(s) 451, 620, 632, 663
BmrFI CCNGG 4 cut(s) 447, 572, 623, 801
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 33, 826
BmuI ACTGGG 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 770, 802
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 4 cut(s) 447, 572, 623, 801
BsaHI GRCGYC 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 446, 622, 800
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 875, 905
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse118I RCCGGY 2 cut(s) 520, 808
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 446, 622, 800
BseGI GGATG 4 cut(s) 48, 98, 299, 841
BseLI CCNNNNNNNGG 1 cut(s) 670
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 2 cut(s) 621, 810
Bsh1236I CGCG 1 cut(s) 406
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 58, 575, 631, 686
BsiEI CGRYCG 1 cut(s) 189
BsiHKAI GWGCWC 4 cut(s) 483, 702, 788, 990
BsiHKCI CYCGRG 2 cut(s) 476, 701
BsiSI CCGG 9 cut(s) 361, 446, 521, 571, 622, 800, 809, 857, 903
BslFI GGGAC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 670
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 4 cut(s) 58, 575, 631, 686
BsoBI CYCGRG 2 cut(s) 476, 701
Bsp1286I GDGCHC 4 cut(s) 483, 702, 788, 990
Bsp143I GATC 2 cut(s) 186, 196
BspANI GGCC 4 cut(s) 58, 575, 631, 686
BspFNI CGCG 1 cut(s) 406
BspLI GGNNCC 4 cut(s) 451, 620, 632, 663
BspQI GCTCTTC 1 cut(s) 690
BsrBI CCGCTC 2 cut(s) 414, 781
BsrFI RCCGGY 2 cut(s) 520, 808
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 2 cut(s) 520, 808
BssECI CCNNGG 3 cut(s) 446, 622, 800
BssMI GATC 2 cut(s) 186, 196
BssNI GRCGYC 1 cut(s) 791
BssSI CACGAG 1 cut(s) 430
Bst2BI CACGAG 1 cut(s) 430
Bst4CI ACNGT 3 cut(s) 532, 547, 844
Bst6I CTCTTC 3 cut(s) 236, 293, 690
BstACI GRCGYC 1 cut(s) 791
BstC8I GCNNGC 3 cut(s) 426, 810, 854
BstDEI CTNAG 2 cut(s) 6, 577
BstF5I GGATG 4 cut(s) 48, 98, 299, 841
BstFNI CGCG 1 cut(s) 406
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 2 cut(s) 408, 563
BstKTI GATC 2 cut(s) 189, 199
BstMBI GATC 2 cut(s) 186, 196
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 9 cut(s) 64, 124, 346, 355, 382, 403, 618, 683, 926
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 4 cut(s) 445, 570, 621, 799
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 621, 810
BsuI GTATCC 1 cut(s) 807
BsuRI GGCC 4 cut(s) 58, 575, 631, 686
BtrI CACGTC 2 cut(s) 154, 538
BtsCI GGATG 4 cut(s) 48, 98, 299, 841
Cac8I GCNNGC 3 cut(s) 426, 810, 854
CfoI GCGC 2 cut(s) 408, 563
Cfr10I RCCGGY 2 cut(s) 520, 808
Cfr13I GGNCC 6 cut(s) 450, 528, 573, 630, 661, 684
CpoI CGGWCCG 1 cut(s) 528
CseI GACGC 2 cut(s) 601, 780
Csp6I GTAC 2 cut(s) 191, 749
CspI CGGWCCG 1 cut(s) 528
CviAII CATG 3 cut(s) 115, 887, 983
CviQI GTAC 2 cut(s) 191, 749
DdeI CTNAG 2 cut(s) 6, 577
DpnI GATC 2 cut(s) 188, 198
DpnII GATC 2 cut(s) 186, 196
DrdI GACNNNNNNGTC 1 cut(s) 611
DseDI GACNNNNNNGTC 1 cut(s) 611
EaeI YGGCCR 1 cut(s) 56
Eam1104I CTCTTC 3 cut(s) 236, 293, 690
EarI CTCTTC 3 cut(s) 236, 293, 690
EciI GGCGGA 1 cut(s) 238
Ecl136II GAGCTC 4 cut(s) 481, 700, 786, 988
Eco24I GRGCYC 4 cut(s) 483, 702, 788, 990
Eco47I GGWCC 3 cut(s) 450, 528, 661
Eco53kI GAGCTC 4 cut(s) 481, 700, 786, 988
Eco88I CYCGRG 2 cut(s) 476, 701
EcoICRI GAGCTC 4 cut(s) 481, 700, 786, 988
EcoO109I RGGNCCY 2 cut(s) 630, 661
EcoT38I GRGCYC 4 cut(s) 483, 702, 788, 990
FaeI CATG 3 cut(s) 118, 890, 986
FaiI YATR 7 cut(s) 55, 116, 668, 762, 888, 984, 997
FaqI GGGAC 1 cut(s) 463
FatI CATG 3 cut(s) 114, 886, 982
FauI CCCGC 1 cut(s) 525
Fnu4HI GCNGC 7 cut(s) 59, 125, 377, 404, 610, 675, 824
FokI GGATG 4 cut(s) 55, 85, 286, 848
FriOI GRGCYC 4 cut(s) 483, 702, 788, 990
Fsp4HI GCNGC 7 cut(s) 59, 125, 377, 404, 610, 675, 824
FspBI CTAG 1 cut(s) 503
GlaI GCGC 2 cut(s) 407, 562
GluI GCNGC 7 cut(s) 59, 125, 377, 404, 610, 675, 824
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 4 cut(s) 58, 575, 631, 686
HapII CCGG 9 cut(s) 361, 446, 521, 571, 622, 800, 809, 857, 903
HgaI GACGC 2 cut(s) 601, 780
HhaI GCGC 2 cut(s) 408, 563
Hin1I GRCGYC 1 cut(s) 791
Hin1II CATG 3 cut(s) 118, 890, 986
Hin6I GCGC 2 cut(s) 406, 561
HinP1I GCGC 2 cut(s) 406, 561
HincII GTYRAC 2 cut(s) 112, 157
HindII GTYRAC 2 cut(s) 112, 157
HinfI GANTC 7 cut(s) 32, 315, 419, 509, 755, 899, 971
HpaII CCGG 9 cut(s) 361, 446, 521, 571, 622, 800, 809, 857, 903
HphI GGTGA 1 cut(s) 256
Hpy166II GTNNAC 5 cut(s) 12, 112, 157, 463, 535
Hpy188I TCNGA 8 cut(s) 37, 391, 418, 487, 528, 604, 640, 898
Hpy188III TCNNGA 7 cut(s) 184, 616, 728, 871, 940, 952, 968
Hpy8I GTNNAC 5 cut(s) 12, 112, 157, 463, 535
Hpy99I CGWCG 2 cut(s) 542, 796
HpyAV CCTTC 2 cut(s) 482, 763
HpyCH4III ACNGT 3 cut(s) 532, 547, 844
HpyCH4IV ACGT 3 cut(s) 153, 459, 537
HpyCH4V TGCA 1 cut(s) 826
HpyF10VI GCNNNNNNNGC 9 cut(s) 64, 124, 346, 355, 382, 403, 618, 683, 926
HpyF3I CTNAG 2 cut(s) 6, 577
HpySE526I ACGT 3 cut(s) 153, 459, 537
Hsp92I GRCGYC 1 cut(s) 791
Hsp92II CATG 3 cut(s) 118, 890, 986
HspAI GCGC 2 cut(s) 406, 561
KroI GCCGGC 1 cut(s) 808
KroNI GCCGGC 1 cut(s) 810
Kzo9I GATC 2 cut(s) 186, 196
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 8 cut(s) 186, 345, 419, 503, 618, 778, 783, 883
Lsp1109I GCAGC 2 cut(s) 621, 810
LweI GCATC 2 cut(s) 33, 826
MaeI CTAG 1 cut(s) 503
MaeII ACGT 3 cut(s) 153, 459, 537
MaeIII GTNAC 4 cut(s) 143, 541, 815, 871
MalI GATC 2 cut(s) 188, 198
MbiI CCGCTC 2 cut(s) 414, 781
MboI GATC 2 cut(s) 186, 196
MboII GAAGA 5 cut(s) 223, 280, 655, 707, 754
MhlI GDGCHC 4 cut(s) 483, 702, 788, 990
MluCI AATT 3 cut(s) 292, 596, 991
MlyI GAGTC 2 cut(s) 413, 503
MmeI TCCRAC 3 cut(s) 441, 618, 672
MroNI GCCGGC 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 947
MspI CCGG 9 cut(s) 361, 446, 521, 571, 622, 800, 809, 857, 903
MspR9I CCNGG 4 cut(s) 447, 572, 623, 801
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 9 cut(s) 64, 124, 346, 355, 382, 403, 618, 683, 926
NaeI GCCGGC 1 cut(s) 810
NciI CCSGG 4 cut(s) 447, 572, 623, 801
NdeII GATC 2 cut(s) 186, 196
NgoMIV GCCGGC 1 cut(s) 808
NlaIII CATG 3 cut(s) 118, 890, 986
NlaIV GGNNCC 4 cut(s) 451, 620, 632, 663
NmeAIII GCCGAG 2 cut(s) 613, 767
NmuCI GTSAC 2 cut(s) 541, 871
NspI RCATGY 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 690
PcsI WCGNNNNNNNCGW 2 cut(s) 428, 483
PctI GAATGC 1 cut(s) 826
PdiI GCCGGC 1 cut(s) 810
PdmI GAANNNNTTC 1 cut(s) 947
PfeI GAWTC 5 cut(s) 32, 315, 755, 899, 971
PkrI GCNGC 7 cut(s) 60, 126, 378, 405, 611, 676, 825
Ple19I CGATCG 1 cut(s) 189
PleI GAGTC 2 cut(s) 413, 503
PpsI GAGTC 2 cut(s) 413, 503
PpuMI RGGWCCY 1 cut(s) 661
Psp124BI GAGCTC 4 cut(s) 483, 702, 788, 990
Psp5II RGGWCCY 1 cut(s) 661
PspN4I GGNNCC 4 cut(s) 451, 620, 632, 663
PspPI GGNCC 6 cut(s) 450, 528, 573, 630, 661, 684
PspPPI RGGWCCY 1 cut(s) 661
PspXI VCTCGAGB 1 cut(s) 476
PvuI CGATCG 1 cut(s) 189
RsaI GTAC 2 cut(s) 192, 750
RsaNI GTAC 2 cut(s) 191, 749
Rsr2I CGGWCCG 1 cut(s) 528
RsrII CGGWCCG 1 cut(s) 528
SacI GAGCTC 4 cut(s) 483, 702, 788, 990
SapI GCTCTTC 1 cut(s) 690
SatI GCNGC 7 cut(s) 59, 125, 377, 404, 610, 675, 824
Sau3AI GATC 2 cut(s) 186, 196
Sau96I GGNCC 6 cut(s) 450, 528, 573, 630, 661, 684
SchI GAGTC 2 cut(s) 413, 503
ScrFI CCNGG 4 cut(s) 447, 572, 623, 801
SduI GDGCHC 4 cut(s) 483, 702, 788, 990
SfaNI GCATC 2 cut(s) 33, 826
Sfr274I CTCGAG 1 cut(s) 476
SinI GGWCC 3 cut(s) 450, 528, 661
SlaI CTCGAG 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 398, 476
SmoI CTYRAG 2 cut(s) 398, 476
Sse9I AATT 3 cut(s) 292, 596, 991
SspMI CTAG 1 cut(s) 503
SstI GAGCTC 4 cut(s) 483, 702, 788, 990
StyD4I CCNGG 4 cut(s) 445, 570, 621, 799
TaaI ACNGT 3 cut(s) 532, 547, 844
TaiI ACGT 3 cut(s) 156, 462, 540
TaqI TCGA 5 cut(s) 477, 512, 582, 707, 974
TasI AATT 3 cut(s) 292, 596, 991
TauI GCSGC 5 cut(s) 61, 127, 379, 406, 677
TfiI GAWTC 5 cut(s) 32, 315, 755, 899, 971
TseFI GTSAC 2 cut(s) 541, 871
TseI GCWGC 2 cut(s) 609, 823
Tsp45I GTSAC 2 cut(s) 541, 871
TspDTI ATGAA 2 cut(s) 662, 984
TspGWI ACGGA 2 cut(s) 208, 890
VpaK11BI GGWCC 3 cut(s) 450, 528, 661
XceI RCATGY 1 cut(s) 118
XhoI CTCGAG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 947
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.