Rh1DG451300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014384
Physical Location & Seq
Reverse (-)
65907046 .. 65908367
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG451300.1

Sequence Viewer

Length: 870 bp
ATGCCACCGCCGCAACAACCACCAATCAGTAACAGCCACGTCAACCTCCCCGAAACCCCCAACAAGCTCCCGATCGTACCCGATCTCCTCCTCTCCGCCCTCTCCGTCTTTTTCCTCTTCTCCTCCTCCAAAATCACCGTCCTCCCCAAAACCCCACTCTTCAATTTCCCATCCTACCCTCGCCGATTCGTCAAAATCCCCACAATGTCGCTCCACCACCACCACCGCCACCGGGACTTCGCCACGCCGCAATCGCTCTCCGACTGGCTCAAGCCGCGCCTCCGCTCCGACTCGCTCGCCTCGTGGGGCGTGAAGCCGGGGACCAAGAACGTCCACAACCTCTGGCTCGAGCTCTCCGAAGGCGAGAGCTCCCTAGCCGACTCGACCCCGCCGGTTCGGACCGTCCACGTCGTCACGGTTCGGGTCATCGGCGCTCAAAACCGGGTCTTGGTCGAAGCCCAGCAAGAGTTATCGGACGGCAGCGTCAGGACCCGGGGGAGGCCCCTGTCGGAGAAGATGAAGCCCGGCGAGGACCCCATATCGGCGGCGAACCGGGCCGTGTTGGAAGAGCTCGGGTCGATACTAAACGGGTCGGGTCAAGACGGCATTGTGAAGATTGTGCCCGGTTCGTATAGCAAGAAGGTGGAGGAGCGGAGCTCGGCGTCGTATCCGGGGTTGCCGGCGTGTTACGAGCTGCATTCGGTGGACGCTACGGTGGAGGGCTTGCCGGAGGAGGATTTCGTGACGGAGGAGGAGCATGAGTATTCCGATTCCGGCGAGACAAGTGTTGCTCATGAGGCTGTGTCTGTCAAGAAGCATTTCTGGAAATGGGTTAGTCTTGATTCGATAAACCATGAGCTCAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUDIX

Protein Analysis

289

Amino Acids

31.98

Weight (kDa)

6.11

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24460
fragaria_vesca FvH4_7g32940
malus_domestica MD01G1228500.v1.1 MD07G1299300.v1.1
prunus_persica Prupe.2G319100_v2.0.a1
pyrus_communis pycom01g23660
rosa_chinensis RchiOBHm_Chr1g0382901
rosa_laevigata RLG00000026150
rosa_multiflora Rmu_co8243775.1_g000001 Rmu_sc0010366.1_g000004
rosa_roxburghii Rroxscaffold_4G00277790
rosa_rugosa Rorug01G0437200
rosa_samantha Rh1AG462200 Rh1BG419100 Rh1CG432900 Rh1DG451300
rosa_wichuraiana Rw1G040960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AccBSI CCGCTC 2 cut(s) 285, 652
AccII CGCG 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 662
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 4 cut(s) 232, 448, 498, 541
AgsI TTSAA 1 cut(s) 163
AjiI CACGTC 2 cut(s) 40, 409
AluBI AGCT 7 cut(s) 67, 352, 369, 571, 657, 694, 859
AluI AGCT 7 cut(s) 67, 352, 369, 571, 657, 694, 859
Alw21I GWGCWC 5 cut(s) 354, 371, 573, 659, 861
Alw26I GTCTC 1 cut(s) 773
Ama87I CYCGRG 3 cut(s) 347, 492, 572
AoxI GGCC 2 cut(s) 500, 555
ApeKI GCWGC 2 cut(s) 480, 694
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 818
AspLEI GCGC 2 cut(s) 279, 434
AspS9I GGNCC 6 cut(s) 321, 399, 489, 501, 532, 555
AsuC2I CCSGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 3 cut(s) 347, 492, 572
AvaII GGWCC 4 cut(s) 321, 399, 489, 532
BaeGI GKGCMC 1 cut(s) 624
BanII GRGCYC 5 cut(s) 354, 371, 573, 659, 861
BauI CACGAG 1 cut(s) 301
Bbv12I GWGCWC 5 cut(s) 354, 371, 573, 659, 861
BbvI GCAGC 2 cut(s) 492, 681
BccI CCATC 1 cut(s) 178
BceAI ACGGC 3 cut(s) 493, 542, 619
BciVI GTATCC 1 cut(s) 678
BcnI CCSGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
BcoDI GTCTC 1 cut(s) 773
BfaI CTAG 1 cut(s) 374
BfoI RGCGCY 1 cut(s) 435
BfuI GTATCC 1 cut(s) 678
BisI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
BlsI GCNGC 6 cut(s) 12, 249, 276, 482, 547, 696
Bme1390I CCNGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
Bme18I GGWCC 4 cut(s) 321, 399, 489, 532
BmeT110I CYCGRG 3 cut(s) 347, 492, 572
BmgBI CACGTC 2 cut(s) 40, 409
BmgT120I GGNCC 6 cut(s) 321, 399, 489, 501, 532, 555
BmiI GGNNCC 4 cut(s) 322, 491, 503, 534
BmrFI CCNGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpuEI CTTGAG 1 cut(s) 254
BpuMI CCSGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
BsaHI GRCGYC 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 317, 492, 493, 671
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 746, 776
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 448, 498, 541
Bse118I RCCGGY 2 cut(s) 391, 679
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 4 cut(s) 317, 492, 493, 671
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 4 cut(s) 232, 448, 498, 541
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 8 cut(s) 77, 80, 112, 115, 662, 746, 764, 767
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 2 cut(s) 492, 681
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 277
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 502, 557
BsiEI CGRYCG 1 cut(s) 75
BsiHKAI GWGCWC 5 cut(s) 354, 371, 573, 659, 861
BsiHKCI CYCGRG 3 cut(s) 347, 492, 572
BslFI GGGAC 2 cut(s) 248, 334
BslI CCNNNNNNNGG 4 cut(s) 232, 448, 498, 541
BsmAI GTCTC 1 cut(s) 773
BsmFI GGGAC 2 cut(s) 248, 334
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 2 cut(s) 502, 557
BsoBI CYCGRG 3 cut(s) 347, 492, 572
Bsp1286I GDGCHC 6 cut(s) 354, 371, 573, 624, 659, 861
Bsp143I GATC 2 cut(s) 72, 82
BspANI GGCC 2 cut(s) 502, 557
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 793
BspLI GGNNCC 4 cut(s) 322, 491, 503, 534
BspQI GCTCTTC 1 cut(s) 561
BsrBI CCGCTC 2 cut(s) 285, 652
BsrFI RCCGGY 2 cut(s) 391, 679
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 2 cut(s) 391, 679
BssECI CCNNGG 4 cut(s) 317, 492, 493, 671
BssMI GATC 2 cut(s) 72, 82
BssNI GRCGYC 1 cut(s) 662
BssSI CACGAG 1 cut(s) 301
Bst2BI CACGAG 1 cut(s) 301
Bst4CI ACNGT 4 cut(s) 139, 403, 418, 715
Bst6I CTCTTC 3 cut(s) 122, 164, 561
BstACI GRCGYC 1 cut(s) 662
BstC8I GCNNGC 3 cut(s) 297, 681, 725
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 279, 434
BstKTI GATC 2 cut(s) 75, 85
BstMAI GTCTC 1 cut(s) 773
BstMBI GATC 2 cut(s) 72, 82
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 5 cut(s) 10, 253, 274, 554, 797
BstSCI CCNGG 9 cut(s) 231, 316, 441, 491, 492, 523, 552, 622, 670
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 492, 681
BsuI GTATCC 1 cut(s) 678
BsuRI GGCC 2 cut(s) 502, 557
BtrI CACGTC 2 cut(s) 40, 409
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 3 cut(s) 297, 681, 725
CciI TCATGA 1 cut(s) 793
CfoI GCGC 2 cut(s) 279, 434
Cfr10I RCCGGY 2 cut(s) 391, 679
Cfr13I GGNCC 6 cut(s) 321, 399, 489, 501, 532, 555
Cfr9I CCCGGG 1 cut(s) 492
CpoI CGGWCCG 1 cut(s) 399
CseI GACGC 3 cut(s) 472, 651, 716
Csp6I GTAC 1 cut(s) 77
CspI CGGWCCG 1 cut(s) 399
CviAII CATG 3 cut(s) 758, 794, 854
CviQI GTAC 1 cut(s) 77
DpnI GATC 2 cut(s) 74, 84
DpnII GATC 2 cut(s) 72, 82
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
Eam1104I CTCTTC 3 cut(s) 122, 164, 561
EarI CTCTTC 3 cut(s) 122, 164, 561
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 5 cut(s) 352, 369, 571, 657, 859
Eco24I GRGCYC 5 cut(s) 354, 371, 573, 659, 861
Eco47I GGWCC 4 cut(s) 321, 399, 489, 532
Eco53kI GAGCTC 5 cut(s) 352, 369, 571, 657, 859
Eco88I CYCGRG 3 cut(s) 347, 492, 572
EcoICRI GAGCTC 5 cut(s) 352, 369, 571, 657, 859
EcoO109I RGGNCCY 3 cut(s) 489, 501, 532
EcoT38I GRGCYC 5 cut(s) 354, 371, 573, 659, 861
FaeI CATG 3 cut(s) 761, 797, 857
FaiI YATR 6 cut(s) 539, 633, 759, 795, 855, 868
FaqI GGGAC 2 cut(s) 248, 334
FatI CATG 3 cut(s) 757, 793, 853
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 5 cut(s) 354, 371, 573, 659, 861
Fsp4HI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
FspBI CTAG 1 cut(s) 374
GlaI GCGC 2 cut(s) 278, 433
GluI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
GsaI CCCAGC 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 2 cut(s) 502, 557
HgaI GACGC 3 cut(s) 472, 651, 716
HhaI GCGC 2 cut(s) 279, 434
Hin1I GRCGYC 1 cut(s) 662
Hin1II CATG 3 cut(s) 761, 797, 857
Hin6I GCGC 2 cut(s) 277, 432
HinP1I GCGC 2 cut(s) 277, 432
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 5 cut(s) 186, 290, 380, 770, 842
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 4 cut(s) 43, 334, 406, 706
Hpy188I TCNGA 7 cut(s) 262, 289, 358, 399, 475, 511, 769
Hpy188III TCNNGA 8 cut(s) 70, 487, 599, 742, 794, 811, 823, 839
Hpy8I GTNNAC 4 cut(s) 43, 334, 406, 706
Hpy99I CGWCG 2 cut(s) 413, 667
HpyAV CCTTC 2 cut(s) 353, 634
HpyCH4III ACNGT 4 cut(s) 139, 403, 418, 715
HpyCH4IV ACGT 3 cut(s) 39, 330, 408
HpyCH4V TGCA 1 cut(s) 697
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 253, 274, 554, 797
HpySE526I ACGT 3 cut(s) 39, 330, 408
Hsp92I GRCGYC 1 cut(s) 662
Hsp92II CATG 3 cut(s) 761, 797, 857
HspAI GCGC 2 cut(s) 277, 432
KroI GCCGGC 1 cut(s) 679
KroNI GCCGGC 1 cut(s) 681
Kzo9I GATC 2 cut(s) 72, 82
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 7 cut(s) 72, 216, 290, 374, 649, 654, 754
Lsp1109I GCAGC 2 cut(s) 492, 681
MaeI CTAG 1 cut(s) 374
MaeII ACGT 3 cut(s) 39, 330, 408
MaeIII GTNAC 4 cut(s) 29, 412, 686, 742
MalI GATC 2 cut(s) 74, 84
MbiI CCGCTC 2 cut(s) 285, 652
MboI GATC 2 cut(s) 72, 82
MboII GAAGA 5 cut(s) 109, 151, 526, 578, 625
MhlI GDGCHC 6 cut(s) 354, 371, 573, 624, 659, 861
MluCI AATT 2 cut(s) 163, 862
MlyI GAGTC 2 cut(s) 284, 374
MmeI TCCRAC 4 cut(s) 285, 312, 489, 543
MroNI GCCGGC 1 cut(s) 679
MroXI GAANNNNTTC 1 cut(s) 818
MspR9I CCNGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
Mva1269I GAATGC 1 cut(s) 697
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 5 cut(s) 10, 253, 274, 554, 797
NaeI GCCGGC 1 cut(s) 681
NciI CCSGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
NdeII GATC 2 cut(s) 72, 82
NgoMIV GCCGGC 1 cut(s) 679
NlaIII CATG 3 cut(s) 761, 797, 857
NlaIV GGNNCC 4 cut(s) 322, 491, 503, 534
NmeAIII GCCGAG 1 cut(s) 638
NmuCI GTSAC 2 cut(s) 412, 742
PaeR7I CTCGAG 1 cut(s) 347
PagI TCATGA 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 354
PctI GAATGC 1 cut(s) 697
PdiI GCCGGC 1 cut(s) 681
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 3 cut(s) 186, 770, 842
PkrI GCNGC 6 cut(s) 12, 249, 276, 482, 547, 696
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 284, 374
PpsI GAGTC 2 cut(s) 284, 374
PpuMI RGGWCCY 2 cut(s) 489, 532
Psp124BI GAGCTC 5 cut(s) 354, 371, 573, 659, 861
Psp5II RGGWCCY 2 cut(s) 489, 532
PspFI CCCAGC 1 cut(s) 459
PspN4I GGNNCC 4 cut(s) 322, 491, 503, 534
PspPI GGNCC 6 cut(s) 321, 399, 489, 501, 532, 555
PspPPI RGGWCCY 2 cut(s) 489, 532
PspXI VCTCGAGB 1 cut(s) 347
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
Rsr2I CGGWCCG 1 cut(s) 399
RsrII CGGWCCG 1 cut(s) 399
SacI GAGCTC 5 cut(s) 354, 371, 573, 659, 861
SapI GCTCTTC 1 cut(s) 561
SatI GCNGC 6 cut(s) 11, 248, 275, 481, 546, 695
Sau3AI GATC 2 cut(s) 72, 82
Sau96I GGNCC 6 cut(s) 321, 399, 489, 501, 532, 555
SchI GAGTC 2 cut(s) 284, 374
ScrFI CCNGG 9 cut(s) 233, 318, 443, 493, 494, 525, 554, 624, 672
SduI GDGCHC 6 cut(s) 354, 371, 573, 624, 659, 861
Sfr274I CTCGAG 1 cut(s) 347
SinI GGWCC 4 cut(s) 321, 399, 489, 532
SlaI CTCGAG 1 cut(s) 347
SmaI CCCGGG 1 cut(s) 494
SmlI CTYRAG 2 cut(s) 269, 347
SmoI CTYRAG 2 cut(s) 269, 347
Sse9I AATT 2 cut(s) 163, 862
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 5 cut(s) 354, 371, 573, 659, 861
StyD4I CCNGG 9 cut(s) 231, 316, 441, 491, 492, 523, 552, 622, 670
TaaI ACNGT 4 cut(s) 139, 403, 418, 715
TaiI ACGT 3 cut(s) 42, 333, 411
TaqI TCGA 5 cut(s) 348, 383, 453, 578, 845
TasI AATT 2 cut(s) 163, 862
TauI GCSGC 4 cut(s) 13, 250, 277, 548
TfiI GAWTC 3 cut(s) 186, 770, 842
TseFI GTSAC 2 cut(s) 412, 742
TseI GCWGC 2 cut(s) 480, 694
Tsp45I GTSAC 2 cut(s) 412, 742
TspDTI ATGAA 2 cut(s) 533, 855
TspGWI ACGGA 2 cut(s) 94, 761
TspMI CCCGGG 1 cut(s) 492
VpaK11BI GGWCC 4 cut(s) 321, 399, 489, 532
XhoI CTCGAG 1 cut(s) 347
XmaI CCCGGG 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.