Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006319

Physical Location & Seq

Genomic Coordinates Reverse (-)

8370317 .. 8372847

Gene Structure 2531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G24520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGATAATTCAGCTCCAGATTCGTTATCCAGATCGGAAACCGCCGTCACATACGACTCACCATATCCACTCTACGCCATGGCTTTCTCTTCTCTCCGCTCATCCTCCGGTCACAGAATCGCCGTCGGAAGCTTCCTCGAAGATTACAACAACCGCATCGACATTCTCTCTTTCGATTCCGATTCAATGACCGTTAAGCCTCTCCCGAATCTCTCCTTCGAGCATCCTTATCCTCCAACAAAGCTAATGTTCAGTCCTCCTTCTCTCCGTCGTCCTTCCTCCGGAGATCTCCTCGCTTCCTCCGGCGATTTCCTCCGTCTTTGGGAAATTAACGAAGATTCATCAACCGTCGAGCCAATCTCGGTTCTCAACAACAGCAAAACGAGCGAGTTTTGTGCGCCGTTGACTTCCTTCGATTGGAACGATGTAGAGCCGAAACGTCTCGGAACTTGTAGTATTGATACGACGTGTACGATTTGGGATATTGAGAAGTCTGTTGTTGAGACTCAGCTTATAGCTCATGATAAAGAGGTTCATGACATTGCTTGGGGAGAAGCTAGGGTTTTCGCATCAGTCTCTGCTGATGGATCCGTTAGGATCTTTGATTTACGTGATAAGGAACATTCTACAATCATTTACGAGAGTCCTCAGCCTGATACGCCTTTGTTAAGACTTGCTTGGAACAAACAAGATCTTAGATATATGGCTACGATTTTGATGGATTCTAATAAGGTTGTGATTCTCGATATTCGTTCGCCGACTATGCCTGTTGCTGAGCTTGAAAGACATCAGGCTAGTGTGAATGCTATAGCTTGGGCGCCTCAGAGCTGTAAACATATTTGTTCTGGTGGTGATGATACACAGGCTCTTATTTGGGAGCTTCCTACTGTTGCTGGACCCAATGGGATTGATCCGATGTCGGTTTATTCGGCTGGTTCGGAGATTAATCAGTTGCAGTGGTCTTCTTCGCAGCCTGATTGGATTGGTATTGCTTTTGCTAACAAAATGCAGCTCCTTAGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008544 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010026 GO:0010033 GO:0030154 GO:0030855 GO:0032502 GO:0032879 GO:0032880 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0060429 GO:0065007 GO:0090558 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

341

Amino Acids

37.89

Weight (kDa)

4.71

Isoelectric Point (pI)

62.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EIPR1	PF23609	30 - 291	1.9e-09	EIPR1 beta-propeller
Beta-prop_TEP1_2nd	PF25047	93 - 207	2.9e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	130 - 324	5.9e-21	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	131 - 335	2.8e-11	WDHD1 first WD40 domain
WD40_Prp19	PF24814	136 - 212	5.4e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	137 - 295	1.3e-17	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	144 - 210	3e-07	WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	145 - 214	6.4e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	146 - 208	2.7e-09	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	147 - 206	4.2e-06	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	148 - 297	1.4e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24520 AT5G24520 AT5G24520 AT5G24520
fragaria_vesca	FvH4_7g32970 FvH4_7g32970
malus_domestica	MD01G1228700.v1.1 MD07G1299800.v1.1
prunus_persica	Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1
pyrus_communis	pycom01g23670 pycom07g27200
rosa_chinensis	RchiOBHm_Chr1g0382931
rosa_laevigata	RLG00000008438 RLG00000026148
rosa_multiflora	Rmu_co8253715.1_g000001 Rmu_sc0000698.1_g000059 Rmu_sc0018693.1_g000001 Rmu_sc0018693.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277770
rosa_rugosa	Rorug01G0437200
rosa_samantha	Rh1AG462700 Rh1BG419600 Rh1DG451600 Rh5AG038100
rosa_wichuraiana	Rw1G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	99
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	3 cut(s)	42, 97, 154
AclWI	GGATC	4 cut(s)	582, 595, 605, 905
AcyI	GRCGYC	1 cut(s)	818
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	3 cut(s)	281, 322, 417
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	2 cut(s)	186, 782
AjiI	CACGTC	1 cut(s)	468
Alw26I	GTCTC	3 cut(s)	446, 497, 580
AlwI	GGATC	4 cut(s)	582, 595, 605, 905
AlwNI	CAGNNNCTG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	970, 1009
AseI	ATTAAT	1 cut(s)	945
AspLEI	GCGC	2 cut(s)	400, 820
AspS9I	GGNCC	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	51, 863
AvaII	GGWCC	1 cut(s)	896
BamHI	GGATCC	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	817
BbsI	GAAGAC	1 cut(s)	954
BbvCI	CCTCAGC	1 cut(s)	648
BbvI	GCAGC	2 cut(s)	982, 1021
BccI	CCATC	2 cut(s)	578, 712
BceAI	ACGGC	3 cut(s)	29, 107, 385
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BcoDI	GTCTC	3 cut(s)	446, 497, 580
BfaI	CTAG	2 cut(s)	558, 795
BfmI	CTRYAG	1 cut(s)	807
BfoI	RGCGCY	1 cut(s)	821
BglII	AGATCT	2 cut(s)	286, 691
BisI	GCNGC	2 cut(s)	971, 1010
BlpI	GCTNAGC	1 cut(s)	774
BlsI	GCNGC	2 cut(s)	972, 1011
Bme18I	GGWCC	1 cut(s)	896
BmgBI	CACGTC	1 cut(s)	468
BmgT120I	GGNCC	1 cut(s)	896
BmiI	GGNNCC	3 cut(s)	589, 819, 898
BmsI	GCATC	3 cut(s)	165, 232, 578
BpiI	GAAGAC	1 cut(s)	954
BplI	GAGNNNNNCTC	4 cut(s)	276, 308, 344, 376
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu1102I	GCTNAGC	1 cut(s)	774
BsaAI	YACGTR	1 cut(s)	611
BsaHI	GRCGYC	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	78
BsaWI	WCCGGW	2 cut(s)	107, 281
Bsc4I	CCNNNNNNNGG	3 cut(s)	281, 322, 417
Bse3DI	GCAATG	1 cut(s)	540
BseAI	TCCGGA	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	101, 223
BseLI	CCNNNNNNNGG	3 cut(s)	281, 322, 417
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	4 cut(s)	521, 662, 765, 836
BseRI	GAGGAG	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	982, 1021
BshNI	GGYRCC	1 cut(s)	817
BsiSI	CCGG	3 cut(s)	108, 282, 303
BslI	CCNNNNNNNGG	3 cut(s)	281, 322, 417
BsmAI	GTCTC	3 cut(s)	446, 497, 580
BsmBI	CGTCTC	1 cut(s)	446
BsmI	GAATGC	1 cut(s)	808
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
Bsp1720I	GCTNAGC	1 cut(s)	774
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	3 cut(s)	42, 97, 154
BspCNI	CTCAG	4 cut(s)	520, 661, 766, 835
BspEI	TCCGGA	1 cut(s)	281
BspHI	TCATGA	2 cut(s)	520, 535
BspLI	GGNNCC	3 cut(s)	589, 819, 898
BspPI	GGATC	4 cut(s)	582, 595, 605, 905
BspT107I	GGYRCC	1 cut(s)	817
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	1 cut(s)	540
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
BssNI	GRCGYC	1 cut(s)	818
BssT1I	CCWWGG	1 cut(s)	78
Bst4CI	ACNGT	3 cut(s)	193, 349, 889
Bst6I	CTCTTC	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	818
BstBAI	YACGTR	1 cut(s)	611
BstDEI	CTNAG	6 cut(s)	507, 648, 695, 774, 822, 1016
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	101, 223
BstH2I	RGCGCY	1 cut(s)	821
BstHHI	GCGC	2 cut(s)	400, 820
BstKTI	GATC	6 cut(s)	35, 289, 590, 600, 694, 913
BstMAI	GTCTC	3 cut(s)	446, 497, 580
BstMBI	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
BstMWI	GCNNNNNNNGC	3 cut(s)	384, 658, 763
BstSFI	CTRYAG	1 cut(s)	807
BstV1I	GCAGC	2 cut(s)	982, 1021
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	4 cut(s)	286, 587, 597, 691
BstYI	RGATCY	4 cut(s)	286, 587, 597, 691
BtgI	CCRYGG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	101, 223
BtsI	GCAGTG	1 cut(s)	962
BtsIMutI	CAGTG	1 cut(s)	962
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	2 cut(s)	520, 535
CfoI	GCGC	2 cut(s)	400, 820
Cfr13I	GGNCC	1 cut(s)	896
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	3 cut(s)	79, 521, 536
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	6 cut(s)	507, 648, 695, 774, 822, 1016
DinI	GGCGCC	1 cut(s)	819
DpnI	GATC	6 cut(s)	34, 288, 589, 599, 693, 912
DpnII	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	896
EcoT14I	CCWWGG	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	819
EheI	GGCGCC	1 cut(s)	819
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	3 cut(s)	82, 524, 539
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FatI	CATG	3 cut(s)	78, 520, 535
Fnu4HI	GCNGC	2 cut(s)	971, 1010
FokI	GGATG	2 cut(s)	88, 210
Fsp4HI	GCNGC	2 cut(s)	971, 1010
FspBI	CTAG	2 cut(s)	558, 795
GlaI	GCGC	2 cut(s)	399, 819
GluI	GCNGC	2 cut(s)	971, 1010
HaeII	RGCGCY	1 cut(s)	821
HapII	CCGG	3 cut(s)	108, 282, 303
HhaI	GCGC	2 cut(s)	400, 820
Hin1I	GRCGYC	1 cut(s)	818
Hin1II	CATG	3 cut(s)	82, 524, 539
Hin6I	GCGC	2 cut(s)	398, 818
HinP1I	GCGC	2 cut(s)	398, 818
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HindIII	AAGCTT	1 cut(s)	130
HpaII	CCGG	3 cut(s)	108, 282, 303
HphI	GGTGA	2 cut(s)	51, 863
Hpy166II	GTNNAC	3 cut(s)	405, 471, 833
Hpy188I	TCNGA	7 cut(s)	37, 128, 181, 446, 825, 915, 940
Hpy188III	TCNNGA	7 cut(s)	17, 30, 205, 282, 521, 536, 743
Hpy8I	GTNNAC	3 cut(s)	405, 471, 833
Hpy99I	CGWCG	4 cut(s)	128, 273, 353, 469
HpyAV	CCTTC	4 cut(s)	226, 270, 285, 421
HpyCH4III	ACNGT	3 cut(s)	193, 349, 889
HpyCH4IV	ACGT	3 cut(s)	439, 467, 610
HpyCH4V	TGCA	2 cut(s)	955, 1009
HpyF10VI	GCNNNNNNNGC	3 cut(s)	384, 658, 763
HpyF3I	CTNAG	6 cut(s)	507, 648, 695, 774, 822, 1016
HpySE526I	ACGT	3 cut(s)	439, 467, 610
Hsp92I	GRCGYC	1 cut(s)	818
Hsp92II	CATG	3 cut(s)	82, 524, 539
HspAI	GCGC	2 cut(s)	398, 818
KasI	GGCGCC	1 cut(s)	817
Kpn2I	TCCGGA	1 cut(s)	281
Kzo9I	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
LmnI	GCTCC	3 cut(s)	19, 877, 1017
Lsp1109I	GCAGC	2 cut(s)	982, 1021
LweI	GCATC	3 cut(s)	165, 232, 578
MaeI	CTAG	2 cut(s)	558, 795
MaeII	ACGT	3 cut(s)	439, 467, 610
MaeIII	GTNAC	2 cut(s)	46, 110
MalI	GATC	6 cut(s)	34, 288, 589, 599, 693, 912
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
MboII	GAAGA	5 cut(s)	81, 152, 347, 954, 957
MflI	RGATCY	4 cut(s)	286, 587, 597, 691
MluCI	AATT	2 cut(s)	7, 327
Mly113I	GGCGCC	1 cut(s)	818
MlyI	GAGTC	3 cut(s)	50, 499, 652
MmeI	TCCRAC	2 cut(s)	106, 260
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	4 cut(s)	195, 330, 668, 945
MspI	CCGG	3 cut(s)	108, 282, 303
Mva1269I	GAATGC	1 cut(s)	808
MwoI	GCNNNNNNNGC	3 cut(s)	384, 658, 763
NarI	GGCGCC	1 cut(s)	818
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
NlaIII	CATG	3 cut(s)	82, 524, 539
NlaIV	GGNNCC	3 cut(s)	589, 819, 898
NmuCI	GTSAC	2 cut(s)	46, 110
PagI	TCATGA	2 cut(s)	520, 535
PcsI	WCGNNNNNNNCGW	2 cut(s)	420, 470
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	8 cut(s)	20, 117, 176, 182, 208, 338, 722, 739
PkrI	GCNGC	2 cut(s)	972, 1011
PleI	GAGTC	3 cut(s)	50, 499, 651
PluTI	GGCGCC	1 cut(s)	821
PpsI	GAGTC	3 cut(s)	50, 499, 651
Ppu21I	YACGTR	1 cut(s)	611
PshBI	ATTAAT	1 cut(s)	945
PspN4I	GGNNCC	3 cut(s)	589, 819, 898
PspPI	GGNCC	1 cut(s)	896
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	4 cut(s)	286, 587, 597, 691
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	195, 330, 668, 945
SatI	GCNGC	2 cut(s)	971, 1010
Sau3AI	GATC	6 cut(s)	32, 286, 587, 597, 691, 910
Sau96I	GGNCC	1 cut(s)	896
SchI	GAGTC	3 cut(s)	50, 499, 652
SfaNI	GCATC	3 cut(s)	165, 232, 578
SfcI	CTRYAG	1 cut(s)	807
SfoI	GGCGCC	1 cut(s)	819
SinI	GGWCC	1 cut(s)	896
Sse9I	AATT	2 cut(s)	7, 327
SsiI	CCGC	3 cut(s)	42, 97, 154
SspDI	GGCGCC	1 cut(s)	817
SspMI	CTAG	2 cut(s)	558, 795
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	3 cut(s)	193, 349, 889
TaiI	ACGT	3 cut(s)	442, 470, 613
TaqI	TCGA	7 cut(s)	138, 159, 174, 219, 351, 414, 744
TasI	AATT	2 cut(s)	7, 327
TfiI	GAWTC	8 cut(s)	20, 117, 176, 182, 208, 338, 722, 739
Tru1I	TTAA	4 cut(s)	195, 330, 668, 945
Tru9I	TTAA	4 cut(s)	195, 330, 668, 945
TscAI	CASTG	1 cut(s)	962
TseFI	GTSAC	2 cut(s)	46, 110
TseI	GCWGC	2 cut(s)	970, 1009
Tsp45I	GTSAC	2 cut(s)	46, 110
TspDTI	ATGAA	2 cut(s)	330, 524
TspGWI	ACGGA	3 cut(s)	257, 305, 580
TspRI	CASTG	1 cut(s)	962
VpaK11BI	GGWCC	1 cut(s)	896
VspI	ATTAAT	1 cut(s)	945
XspI	CTAG	2 cut(s)	558, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.