Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8253715.1

Orthogroup ID

OG0006319

Physical Location & Seq

Genomic Coordinates Forward (+)

20 .. 795

Gene Structure 776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8253715.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 776 bp

atggagaactcgacccaagaatcccacctcggcccggaaaactcggtcacctacgactccccctacccgctctacgccatggcgttttccccgacccgaacccgccacaaccacccccgcatcgccgtcggcagcttcatcgaggagttctccaaccgggtcgacattctctccttcgacccggacaccctgaccctaaaggccaacccttccctctccttcgaccacccctaccctcccaccaagctcatgttccacccaaaccctaactccctccacaagtccaacgacatcctcgcctcctccggcgactacctccgcctctgggaggtcaaagactcctccgtcgaccgcctcgagcccatctccgtcctcaacaactccaagaccagcgagttctgcgcgccgctgacgtcattcgactggaacgagatcgagccccggcgaatcggaacctccagcatcgacaccacctgtacgatttgggacatcgagaagggcgtcgtcgagacgcagctcatcgctcacgacaaggaggtttacgacattgcgtggggcgaagctagggttttcgcctccgtctccgccgacgggtcggtgaggatttttgatctgagggacaaggagcattccacgattatatacgagagtcctcagccggacacgcccctgctccggctggcctggaacaagcaggacctgaggtacatggcgacgattctgatggatagcaacaaggtcgtgatattggatattcgatcgccgacgatgccggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008544 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010026 GO:0010033 GO:0030154 GO:0030855 GO:0032502 GO:0032879 GO:0032880 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0060429 GO:0065007 GO:0090558 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

259

Amino Acids

29.39

Weight (kDa)

4.99

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24520 AT5G24520 AT5G24520 AT5G24520
fragaria_vesca	FvH4_7g32970 FvH4_7g32970
malus_domestica	MD01G1228700.v1.1 MD07G1299800.v1.1
prunus_persica	Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1
pyrus_communis	pycom01g23670 pycom07g27200
rosa_chinensis	RchiOBHm_Chr1g0382931
rosa_laevigata	RLG00000008438 RLG00000026148
rosa_multiflora	Rmu_co8253715.1_g000001 Rmu_sc0000698.1_g000059 Rmu_sc0018693.1_g000001 Rmu_sc0018693.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277770
rosa_rugosa	Rorug01G0437200
rosa_samantha	Rh1AG462700 Rh1BG419600 Rh1DG451600 Rh5AG038100
rosa_wichuraiana	Rw1G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AatII	GACGTC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	70
AccI	GTMKAC	2 cut(s)	162, 348
AccII	CGCG	1 cut(s)	404
AciI	CCGC	7 cut(s)	68, 103, 118, 319, 352, 407, 585
AcyI	GRCGYC	2 cut(s)	413, 501
AfaI	GTAC	2 cut(s)	478, 707
AfiI	CCNNNNNNNGG	5 cut(s)	34, 325, 328, 591, 675
AjnI	CCWGG	1 cut(s)	683
AjuI	GAANNNNNNNTTGG	2 cut(s)	236, 268
AluBI	AGCT	4 cut(s)	135, 247, 517, 563
AluI	AGCT	4 cut(s)	135, 247, 517, 563
Alw26I	GTCTC	2 cut(s)	503, 586
AlwNI	CAGNNNCTG	1 cut(s)	700
Ama87I	CYCGRG	1 cut(s)	356
AoxI	GGCC	3 cut(s)	31, 201, 681
ApeKI	GCWGC	2 cut(s)	132, 514
AspLEI	GCGC	2 cut(s)	404, 406
AspS9I	GGNCC	2 cut(s)	32, 697
AsuC2I	CCSGG	4 cut(s)	35, 158, 182, 442
AsuHPI	GGTGA	2 cut(s)	40, 610
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	697
AxyI	CCTNAGG	1 cut(s)	701
BanII	GRGCYC	2 cut(s)	363, 441
BbvCI	CCTCAGC	1 cut(s)	654
BbvI	GCAGC	2 cut(s)	144, 526
BccI	CCATC	2 cut(s)	371, 718
BceAI	ACGGC	1 cut(s)	110
BcgI	CGANNNNNNTGC	6 cut(s)	109, 121, 143, 155, 721, 755
BciT130I	CCWGG	1 cut(s)	685
BcnI	CCSGG	4 cut(s)	35, 158, 182, 442
BcoDI	GTCTC	2 cut(s)	503, 586
BfaI	CTAG	1 cut(s)	564
BisI	GCNGC	3 cut(s)	133, 407, 515
BlsI	GCNGC	3 cut(s)	134, 408, 516
Bme1390I	CCNGG	5 cut(s)	35, 158, 182, 442, 685
Bme18I	GGWCC	1 cut(s)	697
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	32, 697
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	5 cut(s)	35, 158, 182, 442, 685
BmsI	GCATC	3 cut(s)	129, 471, 759
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 350, 382
BpmI	CTGGAG	1 cut(s)	442
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	4 cut(s)	35, 158, 182, 442
BsaHI	GRCGYC	2 cut(s)	413, 501
BsaJI	CCNNGG	3 cut(s)	28, 78, 440
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 254, 284
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 325, 328, 591, 675
Bse118I	RCCGGY	1 cut(s)	772
Bse1I	ACTGG	1 cut(s)	428
Bse21I	CCTNAGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	3 cut(s)	28, 78, 440
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	5 cut(s)	34, 325, 328, 591, 675
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	3 cut(s)	605, 668, 692
BseNI	ACTGG	1 cut(s)	428
BsePI	GCGCGC	1 cut(s)	402
BseRI	GAGGAG	3 cut(s)	158, 292, 331
BseXI	GCAGC	2 cut(s)	144, 526
Bsh1236I	CGCG	1 cut(s)	404
Bsh1285I	CGRYCG	2 cut(s)	352, 761
BshFI	GGCC	3 cut(s)	33, 203, 683
BsiEI	CGRYCG	2 cut(s)	352, 761
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	8 cut(s)	35, 157, 182, 306, 442, 659, 676, 773
BslFI	GGGAC	2 cut(s)	500, 632
BslI	CCNNNNNNNGG	5 cut(s)	34, 325, 328, 591, 675
BsmAI	GTCTC	2 cut(s)	503, 586
BsmBI	CGTCTC	2 cut(s)	503, 586
BsmFI	GGGAC	2 cut(s)	500, 632
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	33, 203, 683
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	363, 441
Bsp143I	GATC	3 cut(s)	432, 610, 758
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	7 cut(s)	68, 103, 118, 319, 352, 407, 585
BspANI	GGCC	3 cut(s)	33, 203, 683
BspCNI	CTCAG	3 cut(s)	606, 667, 693
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	454
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	546
BsrFI	RCCGGY	1 cut(s)	772
BsrI	ACTGG	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	772
BssECI	CCNNGG	3 cut(s)	28, 78, 440
BssHII	GCGCGC	1 cut(s)	402
BssMI	GATC	3 cut(s)	432, 610, 758
BssNI	GRCGYC	2 cut(s)	413, 501
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	685
BstACI	GRCGYC	2 cut(s)	413, 501
BstC8I	GCNNGC	2 cut(s)	404, 681
BstDEI	CTNAG	3 cut(s)	614, 654, 701
BstDSI	CCRYGG	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	46
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	2 cut(s)	404, 406
BstKTI	GATC	3 cut(s)	435, 613, 761
BstMAI	GTCTC	2 cut(s)	503, 586
BstMBI	GATC	3 cut(s)	432, 610, 758
BstMCI	CGRYCG	2 cut(s)	352, 761
BstMWI	GCNNNNNNNGC	3 cut(s)	399, 664, 769
BstNI	CCWGG	1 cut(s)	685
BstPI	GGTNACC	1 cut(s)	46
BstSCI	CCNGG	5 cut(s)	33, 156, 180, 440, 683
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	144, 526
Bsu36I	CCTNAGG	1 cut(s)	701
BsuRI	GGCC	3 cut(s)	33, 203, 683
BtgI	CCRYGG	1 cut(s)	78
BtgZI	GCGATG	2 cut(s)	106, 505
BtsCI	GGATG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	404, 681
CaiI	CAGNNNCTG	1 cut(s)	700
CfoI	GCGC	2 cut(s)	404, 406
Cfr10I	RCCGGY	1 cut(s)	772
Cfr13I	GGNCC	2 cut(s)	32, 697
CseI	GACGC	2 cut(s)	490, 520
Csp6I	GTAC	2 cut(s)	477, 706
CviAII	CATG	3 cut(s)	79, 250, 709
CviQI	GTAC	2 cut(s)	477, 706
DdeI	CTNAG	3 cut(s)	614, 654, 701
DpnI	GATC	3 cut(s)	434, 612, 760
DpnII	GATC	3 cut(s)	432, 610, 758
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
EciI	GGCGGA	2 cut(s)	308, 574
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	363, 441
Eco47I	GGWCC	1 cut(s)	697
Eco81I	CCTNAGG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	697
EcoO65I	GGTNACC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	363, 441
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	2 cut(s)	503, 586
FaeI	CATG	3 cut(s)	82, 253, 712
FaiI	YATR	5 cut(s)	80, 251, 641, 643, 710
FaqI	GGGAC	2 cut(s)	500, 632
FatI	CATG	3 cut(s)	78, 249, 708
FauI	CCCGC	3 cut(s)	75, 110, 125
FblI	GTMKAC	2 cut(s)	162, 348
Fnu4HI	GCNGC	3 cut(s)	133, 407, 515
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	2 cut(s)	363, 441
Fsp4HI	GCNGC	3 cut(s)	133, 407, 515
FspBI	CTAG	1 cut(s)	564
GlaI	GCGC	2 cut(s)	403, 405
GluI	GCNGC	3 cut(s)	133, 407, 515
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	33, 203, 683
HapII	CCGG	8 cut(s)	35, 157, 182, 306, 442, 659, 676, 773
HgaI	GACGC	2 cut(s)	490, 520
HhaI	GCGC	2 cut(s)	404, 406
Hin1I	GRCGYC	2 cut(s)	413, 501
Hin1II	CATG	3 cut(s)	82, 253, 712
Hin6I	GCGC	2 cut(s)	402, 404
HinP1I	GCGC	2 cut(s)	402, 404
HincII	GTYRAC	2 cut(s)	163, 349
HindII	GTYRAC	2 cut(s)	163, 349
HinfI	GANTC	6 cut(s)	20, 56, 338, 447, 649, 718
HpaII	CCGG	8 cut(s)	35, 157, 182, 306, 442, 659, 676, 773
HphI	GGTGA	2 cut(s)	40, 610
Hpy166II	GTNNAC	3 cut(s)	163, 349, 541
Hpy188I	TCNGA	3 cut(s)	452, 615, 723
Hpy188III	TCNNGA	4 cut(s)	493, 508, 527, 742
Hpy8I	GTNNAC	3 cut(s)	163, 349, 541
Hpy99I	CGWCG	7 cut(s)	131, 350, 506, 509, 593, 718, 769
HpyAV	CCTTC	4 cut(s)	184, 219, 229, 490
HpyCH4IV	ACGT	1 cut(s)	413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	399, 664, 769
HpyF3I	CTNAG	3 cut(s)	614, 654, 701
HpySE526I	ACGT	1 cut(s)	413
Hsp92I	GRCGYC	2 cut(s)	413, 501
Hsp92II	CATG	3 cut(s)	82, 253, 712
HspAI	GCGC	2 cut(s)	402, 404
Kzo9I	GATC	3 cut(s)	432, 610, 758
LmnI	GCTCC	2 cut(s)	625, 678
Lsp1109I	GCAGC	2 cut(s)	144, 526
LweI	GCATC	3 cut(s)	129, 471, 759
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	434, 612, 760
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	3 cut(s)	432, 610, 758
MhlI	GDGCHC	2 cut(s)	363, 441
MlyI	GAGTC	3 cut(s)	50, 332, 658
MmeI	TCCRAC	2 cut(s)	177, 309
MspA1I	CMGCKG	1 cut(s)	409
MspI	CCGG	8 cut(s)	35, 157, 182, 306, 442, 659, 676, 773
MspR9I	CCNGG	5 cut(s)	35, 158, 182, 442, 685
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	685
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	399, 664, 769
NciI	CCSGG	4 cut(s)	35, 158, 182, 442
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	432, 610, 758
NlaIII	CATG	3 cut(s)	82, 253, 712
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	356
PauI	GCGCGC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 426, 498
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	3 cut(s)	20, 447, 718
PkrI	GCNGC	3 cut(s)	134, 408, 516
Ple19I	CGATCG	1 cut(s)	761
PleI	GAGTC	3 cut(s)	50, 332, 657
PpsI	GAGTC	3 cut(s)	50, 332, 657
PpuMI	RGGWCCY	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	697
Psp6I	CCWGG	1 cut(s)	683
PspEI	GGTNACC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	32, 697
PspPPI	RGGWCCY	1 cut(s)	697
PspXI	VCTCGAGB	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	700
PteI	GCGCGC	1 cut(s)	402
PvuI	CGATCG	1 cut(s)	761
RsaI	GTAC	2 cut(s)	478, 707
RsaNI	GTAC	2 cut(s)	477, 706
SalI	GTCGAC	2 cut(s)	161, 347
SatI	GCNGC	3 cut(s)	133, 407, 515
Sau3AI	GATC	3 cut(s)	432, 610, 758
Sau96I	GGNCC	2 cut(s)	32, 697
SchI	GAGTC	3 cut(s)	50, 332, 658
ScrFI	CCNGG	5 cut(s)	35, 158, 182, 442, 685
SduI	GDGCHC	2 cut(s)	363, 441
SfaNI	GCATC	3 cut(s)	129, 471, 759
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	697
SlaI	CTCGAG	1 cut(s)	356
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SsiI	CCGC	7 cut(s)	68, 103, 118, 319, 352, 407, 585
SspMI	CTAG	1 cut(s)	564
StyD4I	CCNGG	5 cut(s)	33, 156, 180, 440, 683
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	416
TaqII	GACCGA	1 cut(s)	34
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	3 cut(s)	20, 447, 718
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	132, 514
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	127
TspGWI	ACGGA	3 cut(s)	334, 358, 568
VpaK11BI	GGWCC	1 cut(s)	697
XagI	CCTNNNNNAGG	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	162, 348
XspI	CTAG	1 cut(s)	564
ZraI	GACGTC	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.