Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006319

Physical Location & Seq

Genomic Coordinates Reverse (-)

26973664 .. 26974609

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGACCAACACTTTCAGGCCCAAACATGTGACTGGACTTCTCTATACTGGATCACAGTTTCGCGCGCGCAAACTACACGTCGTTTCTGGAGTTGGAATCGCCTGCTTCCCAAATCTCTTCGCGCATTTCCTTCCAAAATCCAAACGCGAACAACCCACTCTTCCGAAACCCGACCTGAAACCTTCCCCCAGACTACCTCTTCTCCCTCTCGACAACTTTTCCGTCACTTTCCCGAGAAAATTTGAGGAAGAAGAAAATGGAGAACTCTACGCAAGAATCGCATCTCCGACAGGAGAGCTCGGTGACGTACGAGTCGCCGTACCCGCTATACGCCATGGCCTTCGCCTCGCCCCAAACCCGAACCCGCCACCAGCACCATCTGATCGCCGTCGGCAGCTTTATCGAGGAGTACTCGAACCGGGTCGACATCATCTCCTTCGACCCGGATACCCTTTCAATAAAACCAATGAACTCTTTGCTTCCTCCGGCGACTACCTCCGCCTCTGGGAGGTCGGCGACTCCTCCGTCGAGCCCATCCAGGTGTTAAACAACAGCAGGACCAGCGAGTTCTGCGCCCCACTGACGTCGTTCGATTGGAACGACATCGAGCCCCGGCGAATTGGGACTTCCAGCATCGACACAACCTGCACAATTTGGGACATTGAAAAGGGGGTCGTCGAAACCCAGCTGATTGCGCACGATGAAGAGGTATACGATATCGCGTGGGGGGAAGCTAGGGGGTTTTTGCTTCGGTTTCGGCTGATGGGTCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008544 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010026 GO:0010033 GO:0030154 GO:0030855 GO:0032502 GO:0032879 GO:0032880 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0060429 GO:0065007 GO:0090558 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

258

Amino Acids

29.1

Weight (kDa)

8.79

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24520 AT5G24520 AT5G24520 AT5G24520
fragaria_vesca	FvH4_7g32970 FvH4_7g32970
malus_domestica	MD01G1228700.v1.1 MD07G1299800.v1.1
prunus_persica	Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1
pyrus_communis	pycom01g23670 pycom07g27200
rosa_chinensis	RchiOBHm_Chr1g0382931
rosa_laevigata	RLG00000008438 RLG00000026148
rosa_multiflora	Rmu_co8253715.1_g000001 Rmu_sc0000698.1_g000059 Rmu_sc0018693.1_g000001 Rmu_sc0018693.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277770
rosa_rugosa	Rorug01G0437200
rosa_samantha	Rh1AG462700 Rh1BG419600 Rh1DG451600 Rh5AG038100
rosa_wichuraiana	Rw1G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	311, 524
AatII	GACGTC	1 cut(s)	587
Acc16I	TGCGCA	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	653
AccI	GTMKAC	2 cut(s)	424, 711
AccII	CGCG	6 cut(s)	63, 65, 67, 122, 147, 722
AciI	CCGC	3 cut(s)	324, 365, 499
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	3 cut(s)	309, 321, 411
AfiI	CCNNNNNNNGG	2 cut(s)	505, 508
AflIII	ACRYGT	2 cut(s)	25, 76
AgsI	TTSAA	2 cut(s)	457, 665
AjiI	CACGTC	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	537
AluBI	AGCT	4 cut(s)	298, 397, 688, 734
AluI	AGCT	4 cut(s)	298, 397, 688, 734
Alw21I	GWGCWC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	2 cut(s)	17, 337
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	6 cut(s)	65, 67, 69, 124, 575, 697
AspS9I	GGNCC	2 cut(s)	18, 558
AsuC2I	CCSGG	3 cut(s)	420, 444, 613
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	558
BanII	GRGCYC	3 cut(s)	300, 534, 612
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	3 cut(s)	385, 542, 757
BceAI	ACGGC	2 cut(s)	302, 372
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	1 cut(s)	539
BciVI	GTATCC	1 cut(s)	440
BcnI	CCSGG	3 cut(s)	420, 444, 613
BfaI	CTAG	1 cut(s)	735
BfuAI	ACCTGC	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	4 cut(s)	420, 444, 539, 613
Bme18I	GGWCC	1 cut(s)	558
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	18, 558
BmrFI	CCNGG	4 cut(s)	420, 444, 539, 613
BmsI	GCATC	2 cut(s)	290, 642
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	108
BpuMI	CCSGG	3 cut(s)	420, 444, 613
BsaHI	GRCGYC	1 cut(s)	584
BsaJI	CCNNGG	2 cut(s)	334, 611
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	505, 508
Bse1I	ACTGG	2 cut(s)	37, 52
BseBI	CCWGG	1 cut(s)	539
BseDI	CCNNGG	2 cut(s)	334, 611
BseGI	GGATG	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	505, 508
BseNI	ACTGG	2 cut(s)	37, 52
BsePI	GCGCGC	2 cut(s)	63, 65
BseRI	GAGGAG	2 cut(s)	420, 511
BseXI	GCAGC	1 cut(s)	406
BseYI	CCCAGC	1 cut(s)	684
BsgI	GTGCAG	1 cut(s)	631
Bsh1236I	CGCG	6 cut(s)	63, 65, 67, 122, 147, 722
BshFI	GGCC	2 cut(s)	19, 339
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	4 cut(s)	419, 444, 486, 613
BsiWI	CGTACG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	637, 671
BslI	CCNNNNNNNGG	2 cut(s)	505, 508
BsmFI	GGGAC	2 cut(s)	637, 671
BsnI	GGCC	2 cut(s)	19, 339
BsoBI	CYCGRG	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	300, 534, 612
Bsp143I	GATC	2 cut(s)	50, 382
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	3 cut(s)	324, 365, 499
BspANI	GGCC	2 cut(s)	19, 339
BspFNI	CGCG	6 cut(s)	63, 65, 67, 122, 147, 722
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	37, 52
BssECI	CCNNGG	2 cut(s)	334, 611
BssHII	GCGCGC	2 cut(s)	63, 65
BssMI	GATC	2 cut(s)	50, 382
BssNAI	GTATAC	1 cut(s)	712
BssNI	GRCGYC	1 cut(s)	584
BssT1I	CCWWGG	1 cut(s)	334
Bst1107I	GTATAC	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	539
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	4 cut(s)	122, 165, 204, 699
BstACI	GRCGYC	1 cut(s)	584
BstC8I	GCNNGC	3 cut(s)	65, 67, 103
BstDSI	CCRYGG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	506
BstF5I	GGATG	1 cut(s)	534
BstFNI	CGCG	6 cut(s)	63, 65, 67, 122, 147, 722
BstHHI	GCGC	6 cut(s)	65, 67, 69, 124, 575, 697
BstKTI	GATC	2 cut(s)	53, 385
BstMBI	GATC	2 cut(s)	50, 382
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 323, 561, 570, 694
BstNI	CCWGG	1 cut(s)	539
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	4 cut(s)	418, 442, 537, 611
BstUI	CGCG	6 cut(s)	63, 65, 67, 122, 147, 722
BstV1I	GCAGC	1 cut(s)	406
BstZ17I	GTATAC	1 cut(s)	712
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	19, 339
BtgI	CCRYGG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	3 cut(s)	65, 67, 103
CfoI	GCGC	6 cut(s)	65, 67, 69, 124, 575, 697
Cfr13I	GGNCC	2 cut(s)	18, 558
Csp6I	GTAC	3 cut(s)	308, 320, 410
CviAII	CATG	2 cut(s)	26, 335
CviJI	RGCY	9 cut(s)	19, 298, 339, 397, 532, 610, 688, 734, 760
CviKI_1	RGCY	9 cut(s)	19, 298, 339, 397, 532, 610, 688, 734, 760
CviQI	GTAC	3 cut(s)	308, 320, 410
DpnI	GATC	2 cut(s)	52, 384
DpnII	GATC	2 cut(s)	50, 382
DrdI	GACNNNNNNGTC	2 cut(s)	311, 524
DseDI	GACNNNNNNGTC	2 cut(s)	311, 524
Eam1104I	CTCTTC	4 cut(s)	122, 165, 204, 699
EarI	CTCTTC	4 cut(s)	122, 165, 204, 699
EciI	GGCGGA	1 cut(s)	488
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	1 cut(s)	334
Eco24I	GRGCYC	3 cut(s)	300, 534, 612
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	558
Eco53kI	GAGCTC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	506
EcoRII	CCWGG	1 cut(s)	537
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	334
EcoT38I	GRGCYC	3 cut(s)	300, 534, 612
ErhI	CCWWGG	1 cut(s)	334
FaeI	CATG	2 cut(s)	29, 338
FaiI	YATR	5 cut(s)	27, 45, 329, 336, 712
FaqI	GGGAC	2 cut(s)	637, 671
FatI	CATG	2 cut(s)	25, 334
FauI	CCCGC	2 cut(s)	331, 372
FblI	GTMKAC	2 cut(s)	424, 711
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	1 cut(s)	521
FriOI	GRGCYC	3 cut(s)	300, 534, 612
Fsp4HI	GCNGC	1 cut(s)	395
FspBI	CTAG	1 cut(s)	735
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	6 cut(s)	64, 66, 68, 123, 574, 696
GluI	GCNGC	1 cut(s)	395
GsaI	CCCAGC	1 cut(s)	688
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	19, 339
HapII	CCGG	4 cut(s)	419, 444, 486, 613
HhaI	GCGC	6 cut(s)	65, 67, 69, 124, 575, 697
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	2 cut(s)	29, 338
Hin6I	GCGC	6 cut(s)	63, 65, 67, 122, 573, 695
HinP1I	GCGC	6 cut(s)	63, 65, 67, 122, 573, 695
HincII	GTYRAC	1 cut(s)	425
HindII	GTYRAC	1 cut(s)	425
HinfI	GANTC	4 cut(s)	96, 276, 312, 518
HpaII	CCGG	4 cut(s)	419, 444, 486, 613
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	425, 712
Hpy188I	TCNGA	3 cut(s)	165, 288, 382
Hpy188III	TCNNGA	3 cut(s)	87, 209, 232
Hpy8I	GTNNAC	2 cut(s)	425, 712
Hpy99I	CGWCG	5 cut(s)	83, 393, 530, 589, 680
HpyAV	CCTTC	4 cut(s)	140, 192, 350, 446
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	3 cut(s)	78, 306, 584
HpyCH4V	TGCA	1 cut(s)	648
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 323, 561, 570, 694
HpySE526I	ACGT	3 cut(s)	78, 306, 584
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	2 cut(s)	29, 338
HspAI	GCGC	6 cut(s)	63, 65, 67, 122, 573, 695
Kzo9I	GATC	2 cut(s)	50, 382
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	290, 642
MaeI	CTAG	1 cut(s)	735
MaeII	ACGT	3 cut(s)	78, 306, 584
MaeIII	GTNAC	3 cut(s)	28, 223, 302
MalI	GATC	2 cut(s)	52, 384
MauBI	CGCGCGCG	1 cut(s)	63
MboI	GATC	2 cut(s)	50, 382
MboII	GAAGA	6 cut(s)	109, 152, 191, 260, 263, 716
MhlI	GDGCHC	3 cut(s)	300, 534, 612
MluCI	AATT	3 cut(s)	239, 618, 651
MlyI	GAGTC	2 cut(s)	321, 512
MmeI	TCCRAC	2 cut(s)	73, 311
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	1 cut(s)	539
MspA1I	CMGCKG	1 cut(s)	688
MspI	CCGG	4 cut(s)	419, 444, 486, 613
MspR9I	CCNGG	4 cut(s)	420, 444, 539, 613
MvaI	CCWGG	1 cut(s)	539
MvnI	CGCG	6 cut(s)	63, 65, 67, 122, 147, 722
MwoI	GCNNNNNNNGC	5 cut(s)	278, 323, 561, 570, 694
NciI	CCSGG	3 cut(s)	420, 444, 613
NcoI	CCATGG	1 cut(s)	334
NdeII	GATC	2 cut(s)	50, 382
NlaIII	CATG	2 cut(s)	29, 338
NmuCI	GTSAC	3 cut(s)	28, 223, 302
NsbI	TGCGCA	1 cut(s)	696
NspI	RCATGY	1 cut(s)	29
PauI	GCGCGC	2 cut(s)	63, 65
PciI	ACATGT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	96, 276
Pfl23II	CGTACG	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	396
PleI	GAGTC	2 cut(s)	320, 512
PpsI	GAGTC	2 cut(s)	320, 512
PscI	ACATGT	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	537
PspLI	CGTACG	1 cut(s)	307
PspPI	GGNCC	2 cut(s)	18, 558
PteI	GCGCGC	2 cut(s)	63, 65
PvuII	CAGCTG	1 cut(s)	688
RsaI	GTAC	3 cut(s)	309, 321, 411
RsaNI	GTAC	3 cut(s)	308, 320, 410
RseI	CAYNNNNRTG	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	423
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	2 cut(s)	50, 382
Sau96I	GGNCC	2 cut(s)	18, 558
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	2 cut(s)	321, 512
ScrFI	CCNGG	4 cut(s)	420, 444, 539, 613
SduI	GDGCHC	3 cut(s)	300, 534, 612
SfaNI	GCATC	2 cut(s)	290, 642
SinI	GGWCC	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	539
Sse9I	AATT	3 cut(s)	239, 618, 651
SsiI	CCGC	3 cut(s)	324, 365, 499
SspMI	CTAG	1 cut(s)	735
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	4 cut(s)	418, 442, 537, 611
StyI	CCWWGG	1 cut(s)	334
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	3 cut(s)	81, 309, 587
TasI	AATT	3 cut(s)	239, 618, 651
TatI	WGTACW	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	96, 276
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	3 cut(s)	28, 223, 302
TseI	GCWGC	1 cut(s)	394
Tsp45I	GTSAC	3 cut(s)	28, 223, 302
TspDTI	ATGAA	2 cut(s)	483, 717
TspGWI	ACGGA	2 cut(s)	211, 514
TspRI	CASTG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	558
XagI	CCTNNNNNAGG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	424, 711
XspI	CTAG	1 cut(s)	735
ZraI	GACGTC	1 cut(s)	585
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.