Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006319

Physical Location & Seq

Genomic Coordinates Reverse (-)

29811203 .. 29813953

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G319500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGAGAACTCAGCACAAGAATCCCATCTCGGTCAGGAGAACTCGGTGACGTACGAGTCTCCGTACCCTCTCTACGCCATGGCCTTCTCTCCCTCCCAAACACGAAACCGACACCAACACCACCGAATCGCCGTGGGTAGCTTTATCGAGGAGTACTCTAACCGGGTCGACATCCTCTCCTTCGACCCGGATACCCTTTCTGTAAAACCAAACCCGACCCTCTCCTTTGATCACCCTTATCCACCCACCAAGCTCATGTTCCACCCAAACCCTAACTCCCTCCACAAAAGTAACGACGTCTTAGCGTCTTCTGGCGACTATCTCCGTCTCTGGGAGGTTCGAGACTCTTCCGTCGAACCCATCCAGGTCTTGAACAACAGTAAGACCAGCGAGTTCTGTGCCCCATTGACCTCATTCGATTGGAACGACATCGAACCCAGACGAATTGGGACTTCCAGCATCGACACCACCTGTACCATTTGGGATATTGAAAAGGGGGTCGTTGAAACCCAACTCATTGCGCACGATAAAGAGGTTTACGACATTGCCTGGGGCGAAGCTAGGGTTTTCGCTTCGGTTTCGGCTGATGGGTCCGTGAGGATCTTCGATTTGCGGGACAAGGAGCATTCTACCATTATCTACGAGAGCCCCCAGCCTGATACCCCTTTGCTTAGATTGGCTTGGAACAAGCAGGACCTGAGGTACATGGCCACCATTTTGATGGACAGCAATAAAGTTGTGATTTTGGATATCCGTTCGCCGACTATGCCCGTTGCCGAGTTAGAGAGGCATAGGGCTAGTGTAAATGCCATTGCTTGGGCACCCCAGAGTTGTAGACACATCTGCTCTGCCGGGGATGATACTCAGGCACTTATTTGGGAGCTGCCCACGGTCGCAGGGCCCAATGGGATCGACCCCATGTCAATGTATTCTGCAGGGGCAGAGATTAATCAGTTGCAGTGGTCTGCTGCACAGCCTGATTGGATTTCGATTGCATTTTCTAACAAGATGCAGCTTTTGAAGGCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008544 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0010026 GO:0010033 GO:0030154 GO:0030855 GO:0032502 GO:0032879 GO:0032880 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045165 GO:0048856 GO:0048869 GO:0050789 GO:0050896 GO:0060429 GO:0065007 GO:0090558 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

344

Amino Acids

38.59

Weight (kDa)

5.05

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24520 AT5G24520 AT5G24520 AT5G24520
fragaria_vesca	FvH4_7g32970 FvH4_7g32970
malus_domestica	MD01G1228700.v1.1 MD07G1299800.v1.1
prunus_persica	Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1 Prupe.2G319500_v2.0.a1
pyrus_communis	pycom01g23670 pycom07g27200
rosa_chinensis	RchiOBHm_Chr1g0382931
rosa_laevigata	RLG00000008438 RLG00000026148
rosa_multiflora	Rmu_co8253715.1_g000001 Rmu_sc0000698.1_g000059 Rmu_sc0018693.1_g000001 Rmu_sc0018693.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277770
rosa_rugosa	Rorug01G0437200
rosa_samantha	Rh1AG462700 Rh1BG419600 Rh1DG451600 Rh5AG038100
rosa_wichuraiana	Rw1G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	55, 350
AatII	GACGTC	1 cut(s)	300
Acc16I	TGCGCA	1 cut(s)	522
AccB1I	GGYRCC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	816
AccI	GTMKAC	2 cut(s)	168, 835
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	2 cut(s)	608, 917
AcoI	YGGCCR	1 cut(s)	708
AcyI	GRCGYC	1 cut(s)	297
AfaI	GTAC	5 cut(s)	53, 65, 155, 475, 704
AfiI	CCNNNNNNNGG	2 cut(s)	331, 816
AgsI	TTSAA	4 cut(s)	373, 491, 506, 1021
AhdI	GACNNNNNGTC	1 cut(s)	919
AjnI	CCWGG	2 cut(s)	363, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	5 cut(s)	141, 253, 560, 883, 1015
AluI	AGCT	5 cut(s)	141, 253, 560, 883, 1015
Alw26I	GTCTC	3 cut(s)	63, 332, 336
AlwI	GGATC	2 cut(s)	608, 917
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	4 cut(s)	81, 708, 899, 1023
ApaI	GGGCCC	1 cut(s)	903
ApeKI	GCWGC	3 cut(s)	883, 968, 1012
AseI	ATTAAT	1 cut(s)	948
AspLEI	GCGC	1 cut(s)	523
AspS9I	GGNCC	4 cut(s)	591, 694, 899, 900
AsuC2I	CCSGG	3 cut(s)	164, 188, 853
AsuHPI	GGTGA	2 cut(s)	58, 224
AvaII	GGWCC	2 cut(s)	591, 694
AxyI	CCTNAGG	1 cut(s)	698
BaeGI	GKGCMC	3 cut(s)	403, 823, 903
BalI	TGGCCA	1 cut(s)	710
BanI	GGYRCC	1 cut(s)	820
BanII	GRGCYC	2 cut(s)	650, 903
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	870, 955, 1024
BccI	CCATC	4 cut(s)	33, 368, 581, 715
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	2 cut(s)	365, 550
BciVI	GTATCC	1 cut(s)	184
BclI	TGATCA	1 cut(s)	229
BcnI	CCSGG	3 cut(s)	164, 188, 853
BcoDI	GTCTC	3 cut(s)	63, 332, 336
BfaI	CTAG	2 cut(s)	561, 798
BfmI	CTRYAG	1 cut(s)	933
BfuI	GTATCC	1 cut(s)	184
BisI	GCNGC	3 cut(s)	884, 969, 1013
BlsI	GCNGC	3 cut(s)	885, 970, 1014
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	5 cut(s)	164, 188, 365, 550, 853
Bme18I	GGWCC	2 cut(s)	591, 694
BmeRI	GACNNNNNGTC	1 cut(s)	919
BmgT120I	GGNCC	4 cut(s)	591, 694, 899, 900
BmiI	GGNNCC	3 cut(s)	592, 822, 901
BmrFI	CCNGG	5 cut(s)	164, 188, 365, 550, 853
BmsI	GCATC	2 cut(s)	468, 999
BpiI	GAAGAC	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
BpuMI	CCSGG	3 cut(s)	164, 188, 853
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	5 cut(s)	78, 132, 549, 852, 888
BsaXI	ACNNNNNCTCC	4 cut(s)	161, 191, 260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 816
Bse21I	CCTNAGG	1 cut(s)	698
Bse3DI	GCAATG	3 cut(s)	516, 543, 810
BseBI	CCWGG	2 cut(s)	365, 550
BseDI	CCNNGG	5 cut(s)	78, 132, 549, 852, 888
BseGI	GGATG	3 cut(s)	171, 360, 862
BseLI	CCNNNNNNNGG	2 cut(s)	331, 816
BseMI	GCAATG	3 cut(s)	516, 543, 810
BseMII	CTCAG	3 cut(s)	24, 689, 878
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	3 cut(s)	403, 823, 903
BseXI	GCAGC	3 cut(s)	870, 955, 1024
BseYI	CCCAGC	1 cut(s)	651
BsgI	GTGCAG	1 cut(s)	954
Bsh1285I	CGRYCG	1 cut(s)	894
BshFI	GGCC	4 cut(s)	83, 710, 901, 1025
BshNI	GGYRCC	1 cut(s)	820
BsiEI	CGRYCG	1 cut(s)	894
BsiSI	CCGG	3 cut(s)	163, 188, 852
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	2 cut(s)	463, 629
BslI	CCNNNNNNNGG	2 cut(s)	331, 816
BsmAI	GTCTC	3 cut(s)	63, 332, 336
BsmBI	CGTCTC	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	463, 629
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	83, 710, 901, 1025
Bsp120I	GGGCCC	1 cut(s)	899
Bsp1286I	GDGCHC	4 cut(s)	403, 650, 823, 903
Bsp143I	GATC	3 cut(s)	229, 600, 909
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	613
BspANI	GGCC	4 cut(s)	83, 710, 901, 1025
BspCNI	CTCAG	3 cut(s)	23, 690, 877
BspLI	GGNNCC	3 cut(s)	592, 822, 901
BspMAI	CTGCAG	1 cut(s)	937
BspPI	GGATC	2 cut(s)	608, 917
BspT107I	GGYRCC	1 cut(s)	820
BsrDI	GCAATG	3 cut(s)	516, 543, 810
BssECI	CCNNGG	5 cut(s)	78, 132, 549, 852, 888
BssMI	GATC	3 cut(s)	229, 600, 909
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	365, 550
Bst4CI	ACNGT	2 cut(s)	380, 892
Bst6I	CTCTTC	1 cut(s)	352
BstACI	GRCGYC	1 cut(s)	297
BstDEI	CTNAG	5 cut(s)	10, 301, 671, 698, 864
BstDSI	CCRYGG	3 cut(s)	78, 132, 888
BstF5I	GGATG	3 cut(s)	171, 360, 862
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	3 cut(s)	232, 603, 912
BstMAI	GTCTC	3 cut(s)	63, 332, 336
BstMBI	GATC	3 cut(s)	229, 600, 909
BstMCI	CGRYCG	1 cut(s)	894
BstMWI	GCNNNNNNNGC	1 cut(s)	766
BstNI	CCWGG	2 cut(s)	365, 550
BstSCI	CCNGG	5 cut(s)	162, 186, 363, 548, 851
BstSFI	CTRYAG	1 cut(s)	933
BstSLI	GKGCMC	3 cut(s)	403, 823, 903
BstV1I	GCAGC	3 cut(s)	870, 955, 1024
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	600
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstYI	RGATCY	1 cut(s)	600
Bsu36I	CCTNAGG	1 cut(s)	698
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	83, 710, 901, 1025
BtgI	CCRYGG	3 cut(s)	78, 132, 888
BtsCI	GGATG	3 cut(s)	171, 360, 862
BtsI	GCAGTG	1 cut(s)	965
BtsIMutI	CAGTG	1 cut(s)	965
CaiI	CAGNNNCTG	1 cut(s)	697
CfoI	GCGC	1 cut(s)	523
Cfr13I	GGNCC	4 cut(s)	591, 694, 899, 900
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	5 cut(s)	52, 64, 154, 474, 703
CviAII	CATG	4 cut(s)	79, 256, 706, 919
CviQI	GTAC	5 cut(s)	52, 64, 154, 474, 703
DdeI	CTNAG	5 cut(s)	10, 301, 671, 698, 864
DpnI	GATC	3 cut(s)	231, 602, 911
DpnII	GATC	3 cut(s)	229, 600, 909
DrdI	GACNNNNNNGTC	2 cut(s)	55, 350
DriI	GACNNNNNGTC	1 cut(s)	919
DseDI	GACNNNNNNGTC	2 cut(s)	55, 350
EaeI	YGGCCR	1 cut(s)	708
Eam1104I	CTCTTC	1 cut(s)	352
Eam1105I	GACNNNNNGTC	1 cut(s)	919
EarI	CTCTTC	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	1025
Eco24I	GRGCYC	2 cut(s)	650, 903
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	2 cut(s)	591, 694
Eco81I	CCTNAGG	1 cut(s)	698
EcoO109I	RGGNCCY	2 cut(s)	694, 899
EcoRII	CCWGG	2 cut(s)	363, 548
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	650, 903
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	4 cut(s)	82, 259, 709, 922
FaiI	YATR	6 cut(s)	80, 257, 707, 767, 792, 920
FaqI	GGGAC	2 cut(s)	463, 629
FatI	CATG	4 cut(s)	78, 255, 705, 918
FauI	CCCGC	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	168, 835
Fnu4HI	GCNGC	3 cut(s)	884, 969, 1013
FokI	GGATG	3 cut(s)	158, 347, 869
FriOI	GRGCYC	2 cut(s)	650, 903
Fsp4HI	GCNGC	3 cut(s)	884, 969, 1013
FspBI	CTAG	2 cut(s)	561, 798
FspI	TGCGCA	1 cut(s)	522
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	3 cut(s)	884, 969, 1013
GsaI	CCCAGC	1 cut(s)	655
HaeIII	GGCC	4 cut(s)	83, 710, 901, 1025
HapII	CCGG	3 cut(s)	163, 188, 852
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	4 cut(s)	82, 259, 709, 922
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	20, 56, 126, 344
HpaII	CCGG	3 cut(s)	163, 188, 852
HphI	GGTGA	2 cut(s)	58, 224
Hpy166II	GTNNAC	3 cut(s)	169, 538, 836
Hpy188III	TCNNGA	4 cut(s)	35, 341, 370, 1029
Hpy8I	GTNNAC	3 cut(s)	169, 538, 836
Hpy99I	CGWCG	2 cut(s)	299, 356
HpyAV	CCTTC	3 cut(s)	94, 190, 1015
HpyCH4III	ACNGT	2 cut(s)	380, 892
HpyCH4IV	ACGT	2 cut(s)	50, 297
HpyCH4V	TGCA	5 cut(s)	935, 958, 971, 995, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	766
HpyF3I	CTNAG	5 cut(s)	10, 301, 671, 698, 864
HpySE526I	ACGT	2 cut(s)	50, 297
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	82, 259, 709, 922
HspAI	GCGC	1 cut(s)	521
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	229, 600, 909
LmnI	GCTCC	2 cut(s)	622, 880
Lsp1109I	GCAGC	3 cut(s)	870, 955, 1024
LweI	GCATC	2 cut(s)	468, 999
MaeI	CTAG	2 cut(s)	561, 798
MaeII	ACGT	2 cut(s)	50, 297
MaeIII	GTNAC	2 cut(s)	46, 290
MalI	GATC	3 cut(s)	231, 602, 911
MboI	GATC	3 cut(s)	229, 600, 909
MboII	GAAGA	3 cut(s)	300, 339, 595
MflI	RGATCY	1 cut(s)	600
MhlI	GDGCHC	4 cut(s)	403, 650, 823, 903
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	1 cut(s)	444
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	2 cut(s)	65, 338
Mox20I	TGGCCA	1 cut(s)	710
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	1 cut(s)	948
MslI	CAYNNNNRTG	2 cut(s)	719, 923
Msp20I	TGGCCA	1 cut(s)	710
MspI	CCGG	3 cut(s)	163, 188, 852
MspR9I	CCNGG	5 cut(s)	164, 188, 365, 550, 853
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	365, 550
MwoI	GCNNNNNNNGC	1 cut(s)	766
NciI	CCSGG	3 cut(s)	164, 188, 853
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	229, 600, 909
NlaIII	CATG	4 cut(s)	82, 259, 709, 922
NlaIV	GGNNCC	3 cut(s)	592, 822, 901
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	1 cut(s)	46
NsbI	TGCGCA	1 cut(s)	522
PceI	AGGCCT	1 cut(s)	1025
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	20, 126
Pfl23II	CGTACG	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	816
PkrI	GCNGC	3 cut(s)	885, 970, 1014
PleI	GAGTC	2 cut(s)	64, 338
PpsI	GAGTC	2 cut(s)	64, 338
PpuMI	RGGWCCY	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	948
Psp5II	RGGWCCY	1 cut(s)	694
Psp6I	CCWGG	2 cut(s)	363, 548
PspFI	CCCAGC	1 cut(s)	651
PspGI	CCWGG	2 cut(s)	363, 548
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	592, 822, 901
PspOMI	GGGCCC	1 cut(s)	899
PspPI	GGNCC	4 cut(s)	591, 694, 899, 900
PspPPI	RGGWCCY	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	937
PstNI	CAGNNNCTG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	600
RsaI	GTAC	5 cut(s)	53, 65, 155, 475, 704
RsaNI	GTAC	5 cut(s)	52, 64, 154, 474, 703
RseI	CAYNNNNRTG	2 cut(s)	719, 923
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	948
SatI	GCNGC	3 cut(s)	884, 969, 1013
Sau3AI	GATC	3 cut(s)	229, 600, 909
Sau96I	GGNCC	4 cut(s)	591, 694, 899, 900
ScaI	AGTACT	1 cut(s)	155
SchI	GAGTC	2 cut(s)	65, 338
ScrFI	CCNGG	5 cut(s)	164, 188, 365, 550, 853
SduI	GDGCHC	4 cut(s)	403, 650, 823, 903
SfaNI	GCATC	2 cut(s)	468, 999
SfcI	CTRYAG	1 cut(s)	933
SinI	GGWCC	2 cut(s)	591, 694
SmiMI	CAYNNNNRTG	2 cut(s)	719, 923
Sse9I	AATT	1 cut(s)	444
SseBI	AGGCCT	1 cut(s)	1025
SsiI	CCGC	1 cut(s)	613
SspMI	CTAG	2 cut(s)	561, 798
StuI	AGGCCT	1 cut(s)	1025
StyD4I	CCNGG	5 cut(s)	162, 186, 363, 548, 851
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	380, 892
TaiI	ACGT	2 cut(s)	53, 300
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	1 cut(s)	444
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	20, 126
Tru1I	TTAA	1 cut(s)	948
Tru9I	TTAA	1 cut(s)	948
TscAI	CASTG	1 cut(s)	965
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	883, 968, 1012
Tsp45I	GTSAC	1 cut(s)	46
TspGWI	ACGGA	5 cut(s)	51, 314, 340, 583, 743
TspRI	CASTG	1 cut(s)	965
Van91I	CCANNNNNTGG	1 cut(s)	816
VpaK11BI	GGWCC	2 cut(s)	591, 694
VspI	ATTAAT	1 cut(s)	948
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmiI	GTMKAC	2 cut(s)	168, 835
XspI	CTAG	2 cut(s)	561, 798
ZraI	GACGTC	1 cut(s)	298
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.