Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003886

Physical Location & Seq

Genomic Coordinates Reverse (-)

9674320 .. 9676219

Gene Structure 1900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27390.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCATTCTACTTCACTCCCTCTCTCTTCATCCACCAAACCCTAAACCTCAAAACCCTTATAAACCCAAAATTCTCTCTTCTTCTGCTACCTTTCGGAGAGATGTGGTGCTTAGAACAGCATCACTCTGTTTCGTCTCCTTCATCTTTCAAAACCAAATTCCAGAGTCATTAGCTGATCCTTTGAAGTCTACCAAACCGTTACGACTCGGCATTGCGAACACTAAGTCTTGGTTCCAGTACTTTGGTAGTGGGTTCGCTATTAGGGTTCCTCCTGACTTTGAAGACGTCAATGAGCCTGAGGATTACTCTGCGGGATTGTCTCTCTATGGTGACAAGGCAAAGCCACAAACTTTCGCCGCCCGGTTCCAAACTCCTGATGGATCAGAAGTTTTGAGTGTAGTCATTCGTCCTTCAAATCAACTTAAGATCACTTTCTTAGAGGCTAAAGATATATCTGATTTGGGATCATTGAAGGCAGCTGCAAGACTTTTTGTTCCAGGTGCGGCAACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGAAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTAGCCTCTGTGAACAGAGGGAAGGTTTATATCGCTGGAGCAGCTGCACCGGAATCCAAATGGAAAGACGATGAGTTGAAGCTCCGATCTGCTGCCATTTCTTTCACTATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

241

Amino Acids

26.77

Weight (kDa)

9.18

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27390 AT5G27390 AT5G27390 AT5G27390
fragaria_vesca	FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310
malus_domestica	MD04G1209500.v1.1 MD12G1224100.v1.1
prunus_persica	Prupe.6G330500_v2.0.a1
pyrus_communis	pycom04g18560 pycom12g20960
rosa_chinensis	RchiOBHm_Chr3g0454051
rosa_laevigata	RLG00000025486
rosa_multiflora	Rmu_sc0012374.1_g000001 Rmu_sc0038647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430860
rosa_rugosa	Rorug02G0652500 Rorug02G0652600 Rorug02G0652700 Rorug02G0652800
rosa_samantha	Rh3AG055500 Rh3BG056900 Rh3CG056200 Rh3DG057500
rosa_wichuraiana	Rw3G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AatII	GACGTC	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	191
AciI	CCGC	3 cut(s)	314, 360, 506
AclWI	GGATC	3 cut(s)	173, 391, 475
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	72, 159
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	2 cut(s)	242, 529
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	6 cut(s)	152, 187, 284, 417, 475, 688
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	5 cut(s)	176, 482, 605, 653, 691
AluI	AGCT	5 cut(s)	176, 482, 605, 653, 691
Alw26I	GTCTC	2 cut(s)	142, 327
AlwI	GGATC	3 cut(s)	173, 391, 475
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	479, 482, 650, 653, 701
ApoI	RAATTY	2 cut(s)	72, 159
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	300
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	469, 491, 640, 662, 688
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	142, 327
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	722
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	7 cut(s)	360, 480, 483, 507, 651, 654, 702
BlsI	GCNGC	7 cut(s)	361, 481, 484, 508, 652, 655, 703
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	364, 501
BmiI	GGNNCC	3 cut(s)	236, 270, 368
BmrFI	CCNGG	2 cut(s)	364, 501
BmsI	GCATC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	291
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	1 cut(s)	666
BpuMI	CCSGG	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	288
BsaWI	WCCGGW	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	501
BseGI	GGATG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	5 cut(s)	469, 491, 640, 662, 688
BsgI	GTGCAG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	364, 659
BsmAI	GTCTC	2 cut(s)	142, 327
BsmBI	CGTCTC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	5 cut(s)	178, 383, 429, 467, 695
BspACI	CCGC	3 cut(s)	314, 360, 506
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	3 cut(s)	236, 270, 368
BspPI	GGATC	3 cut(s)	173, 391, 475
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	178, 383, 429, 467, 695
BssNI	GRCGYC	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	2 cut(s)	33, 85
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	425
BstDEI	CTNAG	4 cut(s)	113, 225, 300, 439
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	5 cut(s)	181, 386, 432, 470, 698
BstMAI	GTCTC	2 cut(s)	142, 327
BstMBI	GATC	5 cut(s)	178, 383, 429, 467, 695
BstMWI	GCNNNNNNNGC	2 cut(s)	611, 650
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	362, 499
BstSFI	CTRYAG	1 cut(s)	722
BstV1I	GCAGC	5 cut(s)	469, 491, 640, 662, 688
BstV2I	GAAGAC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	245
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	31
Csp6I	GTAC	2 cut(s)	241, 528
CviQI	GTAC	2 cut(s)	241, 528
DdeI	CTNAG	4 cut(s)	113, 225, 300, 439
DpnI	GATC	5 cut(s)	180, 385, 431, 469, 697
DpnII	GATC	5 cut(s)	178, 383, 429, 467, 695
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	33, 85
EarI	CTCTTC	2 cut(s)	33, 85
Eco81I	CCTNAGG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	499
Esp3I	CGTCTC	1 cut(s)	142
FaiI	YATR	6 cut(s)	63, 330, 455, 602, 639, 724
FauI	CCCGC	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	7 cut(s)	360, 480, 483, 507, 651, 654, 702
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	7 cut(s)	360, 480, 483, 507, 651, 654, 702
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	7 cut(s)	360, 480, 483, 507, 651, 654, 702
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	364, 659
Hin1I	GRCGYC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	167, 207, 662
HpaII	CCGG	2 cut(s)	364, 659
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	192, 622
Hpy188I	TCNGA	4 cut(s)	99, 388, 460, 695
Hpy188III	TCNNGA	3 cut(s)	164, 275, 377
Hpy8I	GTNNAC	2 cut(s)	192, 622
HpyAV	CCTTC	5 cut(s)	151, 423, 469, 545, 625
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	485, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	611, 650
HpyF3I	CTNAG	4 cut(s)	113, 225, 300, 439
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	288
Kzo9I	GATC	5 cut(s)	178, 383, 429, 467, 695
LmnI	GCTCC	2 cut(s)	647, 696
Lsp1109I	GCAGC	5 cut(s)	469, 491, 640, 662, 688
LweI	GCATC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	2 cut(s)	201, 332
MalI	GATC	5 cut(s)	180, 385, 431, 469, 697
MboI	GATC	5 cut(s)	178, 383, 429, 467, 695
MboII	GAAGA	7 cut(s)	20, 72, 75, 296, 557, 560, 605
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	72, 159, 513, 562
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	176, 201
MnlI	CCTC	7 cut(s)	32, 60, 282, 295, 436, 620, 625
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	426, 557
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	482, 653
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	2 cut(s)	364, 659
MspR9I	CCNGG	2 cut(s)	364, 501
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	611, 650
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	5 cut(s)	178, 383, 429, 467, 695
NlaIV	GGNNCC	3 cut(s)	236, 270, 368
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	662
PkrI	GCNGC	7 cut(s)	361, 481, 484, 508, 652, 655, 703
PleI	GAGTC	2 cut(s)	175, 201
PpsI	GAGTC	2 cut(s)	175, 201
PsiI	TTATAA	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	3 cut(s)	236, 270, 368
PvuII	CAGCTG	2 cut(s)	482, 653
RsaI	GTAC	2 cut(s)	242, 529
RsaNI	GTAC	2 cut(s)	241, 528
SaqAI	TTAA	2 cut(s)	426, 557
SatI	GCNGC	7 cut(s)	360, 480, 483, 507, 651, 654, 702
Sau3AI	GATC	5 cut(s)	178, 383, 429, 467, 695
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	2 cut(s)	176, 201
ScrFI	CCNGG	2 cut(s)	364, 501
SfaNI	GCATC	1 cut(s)	131
SfcI	CTRYAG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	72, 159, 513, 562
SsiI	CCGC	3 cut(s)	314, 360, 506
SspMI	CTAG	1 cut(s)	608
StyD4I	CCNGG	2 cut(s)	362, 499
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	291
TasI	AATT	4 cut(s)	72, 159, 513, 562
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	2 cut(s)	362, 509
TfiI	GAWTC	1 cut(s)	662
Tru1I	TTAA	2 cut(s)	426, 557
Tru9I	TTAA	2 cut(s)	426, 557
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	5 cut(s)	479, 482, 650, 653, 701
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	20, 133, 606
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	72, 159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	191
XspI	CTAG	1 cut(s)	608
ZraI	GACGTC	1 cut(s)	289
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.