Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012374.1

Orthogroup ID

OG0003886

Physical Location & Seq

Genomic Coordinates Forward (+)

736 .. 2757

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012374.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggccattcttctcctctccctccctccccacccactaaaccctaaacccaaagtccccaaccccacagccccaaagcttacttcaaagctcaccatcaccaacaacacacccacctccaaaagagacttaatcctcaagacctcttccatctttctcatttctttgatccctcagcaatacccaactgcccattcttcaacagaaggagcttcacctcctccaaaatcgattctttccggcattgccaacaccaaaagctggttccagttctatggtgatgggttttccattagggtccctcctcagtttgaggacattatggagcctgaggattacaatgctggattgtccctttatggagataaggcaaagcccaagatcttttcggcacgttttgcatcttctgatggatctgaggtagtgaatgttgttattaaaccttccaatcagttcaagatcacctttttagaggccaaagacataacagatttaggctccttgaaggatgtggcaaaaatcttcgttccatgtaatgagtggtttctgttttctcaatttctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

188

Amino Acids

20.71

Weight (kDa)

8.93

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27390 AT5G27390 AT5G27390 AT5G27390
fragaria_vesca	FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310
malus_domestica	MD04G1209500.v1.1 MD12G1224100.v1.1
prunus_persica	Prupe.6G330500_v2.0.a1
pyrus_communis	pycom04g18560 pycom12g20960
rosa_chinensis	RchiOBHm_Chr3g0454051
rosa_laevigata	RLG00000025486
rosa_multiflora	Rmu_sc0012374.1_g000001 Rmu_sc0038647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430860
rosa_rugosa	Rorug02G0652500 Rorug02G0652600 Rorug02G0652700 Rorug02G0652800
rosa_samantha	Rh3AG055500 Rh3BG056900 Rh3CG056200 Rh3DG057500
rosa_wichuraiana	Rw3G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	261
AclWI	GGATC	2 cut(s)	163, 421
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	87, 201, 457, 505
AjuI	GAANNNNNNNTTGG	6 cut(s)	67, 99, 178, 210, 248, 280
AluBI	AGCT	4 cut(s)	79, 91, 212, 261
AluI	AGCT	4 cut(s)	79, 91, 212, 261
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	163, 421
AoxI	GGCC	2 cut(s)	3, 474
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	5 cut(s)	85, 91, 207, 290, 454
AvaII	GGWCC	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	4 cut(s)	104, 158, 275, 404
BcoDI	GTCTC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	381
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
BmsI	GCATC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	268
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	230
BseGI	GGATG	1 cut(s)	514
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	243
BseMII	CTCAG	4 cut(s)	188, 320, 321, 408
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	3 cut(s)	5, 210, 294
BshFI	GGCC	2 cut(s)	5, 476
BshVI	ATCGAT	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	3 cut(s)	41, 284, 337
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	3 cut(s)	41, 284, 337
BsnI	GGCC	2 cut(s)	5, 476
Bsp143I	GATC	4 cut(s)	168, 381, 413, 459
BspANI	GGCC	2 cut(s)	5, 476
BspCNI	CTCAG	4 cut(s)	187, 319, 322, 409
BspDI	ATCGAT	1 cut(s)	230
BspLI	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
BspPI	GGATC	2 cut(s)	163, 421
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	268
BssMI	GATC	4 cut(s)	168, 381, 413, 459
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstDEI	CTNAG	4 cut(s)	174, 306, 330, 417
BstF5I	GGATG	1 cut(s)	514
BstKTI	GATC	4 cut(s)	171, 384, 416, 462
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	4 cut(s)	168, 381, 413, 459
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstX2I	RGATCY	2 cut(s)	381, 413
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	2 cut(s)	381, 413
Bsu15I	ATCGAT	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	5, 476
BsuTUI	ATCGAT	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	230
CviAII	CATG	1 cut(s)	531
DdeI	CTNAG	4 cut(s)	174, 306, 330, 417
DpnI	GATC	4 cut(s)	170, 383, 415, 461
DpnII	GATC	4 cut(s)	168, 381, 413, 459
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	298
FaeI	CATG	1 cut(s)	534
FaiI	YATR	5 cut(s)	276, 323, 360, 485, 532
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	3 cut(s)	41, 284, 337
FatI	CATG	1 cut(s)	530
FokI	GGATG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	5, 476
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	1 cut(s)	534
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	5 cut(s)	85, 91, 207, 290, 454
Hpy188I	TCNGA	3 cut(s)	409, 418, 566
Hpy188III	TCNNGA	2 cut(s)	139, 457
HpyAV	CCTTC	3 cut(s)	200, 453, 499
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	4 cut(s)	174, 306, 330, 417
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	1 cut(s)	534
KflI	GGGWCCC	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	168, 381, 413, 459
LmnI	GCTCC	3 cut(s)	209, 325, 503
LpnPI	CCDG	5 cut(s)	247, 253, 281, 330, 342
LweI	GCATC	1 cut(s)	410
MaeII	ACGT	1 cut(s)	394
MalI	GATC	4 cut(s)	170, 383, 415, 461
MboI	GATC	4 cut(s)	168, 381, 413, 459
MboII	GAAGA	4 cut(s)	138, 189, 396, 514
MflI	RGATCY	2 cut(s)	381, 413
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	557
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	131, 438
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeII	GATC	4 cut(s)	168, 381, 413, 459
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	261
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspN4I	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	381, 413
SaqAI	TTAA	2 cut(s)	131, 438
Sau3AI	GATC	4 cut(s)	168, 381, 413, 459
Sau96I	GGNCC	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	410
SinI	GGWCC	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	230
TasI	AATT	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	131, 438
Tru9I	TTAA	2 cut(s)	131, 438
Van91I	CCANNNNNTGG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.