Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003886

Physical Location & Seq

Genomic Coordinates Forward (+)

28850858 .. 28854218

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G330500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCATTCTTCTTCTCTCCCTCCCTCCCCACCCACCAATTCCTCCCAATAACCCTAAACCCACCACCCCAAAACTCACTCCACCACAGCCTACGATCGCTCTCACCGACTCTAACACCTCCAAAAGACGCTTCATCCTCGAAAGCACTTCCCTTTTTCTCATTTCCTTGACCCCTCAGCAATACCCAGTTGCCCATTCTTCACCAGAAGCTTCAGCGACTCCAAGACCATCCCTTTCCGGCATCGCTAACACGAAATCTTGGTTCCAGTTCTTCGGTGATGGGTTTGCCATTAGGGTCCCTCCTCAGTTTCAGGATGTTTCGGAGCCTGAGGATTACAATACTGGATTGTCCCTTTATGGAGATAAGGTAAAGCCCAAGACCTTTGCGGCACGTTTTGCATCTCCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCCAATTCCCTCAAGATAACCTTTTTAGAGGCCAAAGACATAACAGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTCATTCCAGTTGGATCAACTGTATACTCTGCTCGAACCATAAAGATAAAGGAAGAAGAAGGTTTCAGGACTTACTATTTCTACGAGTTTGGTATACAAGAACAGCATGCAGCACTTGTAGCTGCTGTTAACGGTGGAAAGACATACATTGCTGGAGCAACTGCCCCGCAGTCGAAGTGGAACGATGATGGTGTGAAGCTTCGGTCTGCTGCCATATCCATGACTGTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

252

Amino Acids

27.36

Weight (kDa)

8.94

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27390 AT5G27390 AT5G27390 AT5G27390
fragaria_vesca	FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310
malus_domestica	MD04G1209500.v1.1 MD12G1224100.v1.1
prunus_persica	Prupe.6G330500_v2.0.a1
pyrus_communis	pycom04g18560 pycom12g20960
rosa_chinensis	RchiOBHm_Chr3g0454051
rosa_laevigata	RLG00000025486
rosa_multiflora	Rmu_sc0012374.1_g000001 Rmu_sc0038647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430860
rosa_rugosa	Rorug02G0652500 Rorug02G0652600 Rorug02G0652700 Rorug02G0652800
rosa_samantha	Rh3AG055500 Rh3BG056900 Rh3CG056200 Rh3DG057500
rosa_wichuraiana	Rw3G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	546, 616
AciI	CCGC	2 cut(s)	389, 689
AclWI	GGATC	1 cut(s)	544
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	212, 644, 721
AluI	AGCT	3 cut(s)	212, 644, 721
AlwI	GGATC	1 cut(s)	544
AoxI	GGCC	2 cut(s)	3, 474
ApeKI	GCWGC	4 cut(s)	512, 632, 644, 731
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	3 cut(s)	97, 195, 290
AvaII	GGWCC	1 cut(s)	298
AxyI	CCTNAGG	1 cut(s)	330
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	524, 631, 644, 718
BccI	CCATC	5 cut(s)	238, 275, 404, 451, 704
BfmI	CTRYAG	1 cut(s)	752
BisI	GCNGC	5 cut(s)	390, 513, 633, 645, 732
BlsI	GCNGC	5 cut(s)	391, 514, 634, 646, 733
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	2 cut(s)	252, 410
BmuI	ACTGGG	1 cut(s)	182
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bse1I	ACTGG	4 cut(s)	188, 268, 349, 530
Bse21I	CCTNAGG	1 cut(s)	330
Bse3DI	GCAATG	1 cut(s)	669
BseGI	GGATG	4 cut(s)	135, 230, 322, 443
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	191, 320, 321
BseNI	ACTGG	4 cut(s)	188, 268, 349, 530
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	524, 631, 644, 718
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	5, 476
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	284, 337
BsmFI	GGGAC	2 cut(s)	284, 337
BsnI	GGCC	2 cut(s)	5, 476
Bsp143I	GATC	2 cut(s)	96, 536
BspACI	CCGC	2 cut(s)	389, 689
BspANI	GGCC	2 cut(s)	5, 476
BspCNI	CTCAG	3 cut(s)	190, 319, 322
BspLI	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
BspPI	GGATC	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	669
BsrI	ACTGG	4 cut(s)	188, 268, 349, 530
BssMI	GATC	2 cut(s)	96, 536
BssNAI	GTATAC	2 cut(s)	547, 617
Bst1107I	GTATAC	2 cut(s)	547, 617
Bst4CI	ACNGT	3 cut(s)	544, 656, 748
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	630
BstDEI	CTNAG	3 cut(s)	177, 306, 330
BstF5I	GGATG	4 cut(s)	135, 230, 322, 443
BstKTI	GATC	2 cut(s)	99, 539
BstMBI	GATC	2 cut(s)	96, 536
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 641
BstNSI	RCATGY	1 cut(s)	632
BstSFI	CTRYAG	1 cut(s)	752
BstV1I	GCAGC	4 cut(s)	524, 631, 644, 718
BstZ17I	GTATAC	2 cut(s)	547, 617
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	5, 476
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	135, 230, 322, 443
Cac8I	GCNNGC	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	138
CviAII	CATG	2 cut(s)	629, 742
CviJI	RGCY	8 cut(s)	5, 91, 212, 328, 376, 476, 644, 721
CviKI_1	RGCY	8 cut(s)	5, 91, 212, 328, 376, 476, 644, 721
DdeI	CTNAG	3 cut(s)	177, 306, 330
DpnI	GATC	2 cut(s)	98, 538
DpnII	GATC	2 cut(s)	96, 536
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	330
EcoO109I	RGGNCCY	1 cut(s)	298
FaeI	CATG	2 cut(s)	632, 745
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FaqI	GGGAC	2 cut(s)	284, 337
FatI	CATG	2 cut(s)	628, 741
FauI	CCCGC	1 cut(s)	696
FblI	GTMKAC	2 cut(s)	546, 616
Fnu4HI	GCNGC	5 cut(s)	390, 513, 633, 645, 732
FokI	GGATG	4 cut(s)	122, 217, 329, 430
Fsp4HI	GCNGC	5 cut(s)	390, 513, 633, 645, 732
GluI	GCNGC	5 cut(s)	390, 513, 633, 645, 732
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	2 cut(s)	5, 476
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	138
Hin1II	CATG	2 cut(s)	632, 745
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HindIII	AAGCTT	2 cut(s)	210, 719
HinfI	GANTC	2 cut(s)	110, 220
HpaI	GTTAAC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	3 cut(s)	97, 195, 290
Hpy166II	GTNNAC	3 cut(s)	547, 617, 652
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	314, 407, 457, 589
Hpy8I	GTNNAC	3 cut(s)	547, 617, 652
HpyAV	CCTTC	2 cut(s)	499, 575
HpyCH4III	ACNGT	3 cut(s)	544, 656, 748
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	2 cut(s)	401, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 641
HpyF3I	CTNAG	3 cut(s)	177, 306, 330
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	2 cut(s)	632, 745
KflI	GGGWCCC	1 cut(s)	298
KspAI	GTTAAC	1 cut(s)	652
Kzo9I	GATC	2 cut(s)	96, 536
LmnI	GCTCC	2 cut(s)	325, 677
Lsp1109I	GCAGC	4 cut(s)	524, 631, 644, 718
LweI	GCATC	2 cut(s)	252, 410
MaeII	ACGT	1 cut(s)	394
MalI	GATC	2 cut(s)	98, 538
MboI	GATC	2 cut(s)	96, 536
MboII	GAAGA	6 cut(s)	5, 192, 265, 514, 587, 590
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	39, 448
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	104, 214
MmeI	TCCRAC	1 cut(s)	514
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	740
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	398, 641
NdeII	GATC	2 cut(s)	96, 536
NlaIII	CATG	2 cut(s)	632, 745
NlaIV	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
NspI	RCATGY	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	632
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PkrI	GCNGC	5 cut(s)	391, 514, 634, 646, 733
Ple19I	CGATCG	1 cut(s)	99
PleI	GAGTC	2 cut(s)	104, 214
PpsI	GAGTC	2 cut(s)	104, 214
PpuMI	RGGWCCY	1 cut(s)	298
Psp5II	RGGWCCY	1 cut(s)	298
PspN4I	GGNNCC	5 cut(s)	266, 299, 300, 327, 499
PspPI	GGNCC	1 cut(s)	298
PspPPI	RGGWCCY	1 cut(s)	298
PvuI	CGATCG	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	740
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	5 cut(s)	390, 513, 633, 645, 732
Sau3AI	GATC	2 cut(s)	96, 536
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	2 cut(s)	104, 214
SfaNI	GCATC	2 cut(s)	252, 410
SfcI	CTRYAG	1 cut(s)	752
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	2 cut(s)	39, 448
SsiI	CCGC	2 cut(s)	389, 689
TaaI	ACNGT	3 cut(s)	544, 656, 748
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	3 cut(s)	141, 556, 695
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	2 cut(s)	39, 448
TauI	GCSGC	1 cut(s)	392
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TseI	GCWGC	4 cut(s)	512, 632, 644, 731
TspDTI	ATGAA	2 cut(s)	124, 514
VpaK11BI	GGWCC	1 cut(s)	298
XceI	RCATGY	1 cut(s)	632
XmiI	GTMKAC	2 cut(s)	546, 616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.