Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003886

Physical Location & Seq

Genomic Coordinates Forward (+)

22269988 .. 22273041

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g20960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGACCAAACTACCCTTTCCATTTAACCAAAATTTCAAATCCCTAAAGCCAACTTTCCCAATACTGACATACAAAACCCCCAAATCCTGTCCCACATTATCTCCCTCCAAATTTTTCAACAGCCATGAATGCCATCCTCATTCTCTCATGGCCATTCTTCTTCTCTCCCTCTCTCCCCACCCACCAAATCCTCCCAAAAACCCTAATCCCACCACCCCAAAACCCACAATCTCTCTCCCCACCACTACTACCACCACCACCACTCCTACCTCCTCCAAAAGAAACTTGATCCTCAAGACAACCTCCCTCTTCCTTATTTCTCTGACCCCTCAGCAACACCCAGTTGCCCATTCTTCACCGGAATCTCCTCCGCCGCCTCCAAGGCTGGCTCTTTCCGGCATCGCCAACACGAAAAATTGGTTCCAGTTCTTCGGAGATGGGTTCGCCATTAGGGTCCCTCCTCAGTTTCAGGACGTTCAGGAGCCGGAGGATTACAATTCTGGGTTGTCCCTTTATGGAGACAAGGTAAAGCCCAAGACCTTTGCGGCGCGTTTTGCATCTGCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCGAATTCACTCAAGATCACCTTTTTAGAGGCCAAAGACATAACGGATTTAGGTTCCTTGAAGGAGGCTGCAAAAATCTTCATTCCAGTTGGATCTACTGTATACTCTGCCCGAGCTATAAAGATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTTGGTATACAACAACAGCATGCAGCACTTGTAGCTGCTGTTAACGGTGGAAAGACATATATCGCTGGAGCTACTGCCCCGGAGTCTAAGTGGAATGATGATGGCGTGAAGCTTCGCTCTGCTGCTATATCGATGACTGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

304

Amino Acids

33.21

Weight (kDa)

9.48

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27390 AT5G27390 AT5G27390 AT5G27390
fragaria_vesca	FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310
malus_domestica	MD04G1209500.v1.1 MD12G1224100.v1.1
prunus_persica	Prupe.6G330500_v2.0.a1
pyrus_communis	pycom04g18560 pycom12g20960
rosa_chinensis	RchiOBHm_Chr3g0454051
rosa_laevigata	RLG00000025486
rosa_multiflora	Rmu_sc0012374.1_g000001 Rmu_sc0038647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430860
rosa_rugosa	Rorug02G0652500 Rorug02G0652600 Rorug02G0652700 Rorug02G0652800
rosa_samantha	Rh3AG055500 Rh3BG056900 Rh3CG056200 Rh3DG057500
rosa_wichuraiana	Rw3G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	702, 772
AccII	CGCG	1 cut(s)	550
AciI	CCGC	3 cut(s)	371, 374, 545
AclWI	GGATC	2 cut(s)	283, 700
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	3 cut(s)	31, 110, 604
AgsI	TTSAA	3 cut(s)	37, 118, 661
AluBI	AGCT	4 cut(s)	716, 800, 836, 877
AluI	AGCT	4 cut(s)	716, 800, 836, 877
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	2 cut(s)	283, 700
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	2 cut(s)	150, 630
ApeKI	GCWGC	4 cut(s)	668, 788, 800, 887
ApoI	RAATTY	3 cut(s)	31, 110, 604
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	1 cut(s)	454
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	2 cut(s)	348, 610
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	1 cut(s)	454
BalI	TGGCCA	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	655, 787, 800, 874
BccI	CCATC	5 cut(s)	141, 431, 560, 607, 860
BcnI	CCSGG	1 cut(s)	845
BcoDI	GTCTC	1 cut(s)	513
BglI	GCCNNNNNGGC	1 cut(s)	382
BisI	GCNGC	6 cut(s)	374, 546, 669, 789, 801, 888
BlsI	GCNGC	6 cut(s)	375, 547, 670, 790, 802, 889
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	711
BmgT120I	GGNCC	1 cut(s)	454
BmiI	GGNNCC	5 cut(s)	422, 455, 456, 483, 655
BmrFI	CCNGG	1 cut(s)	845
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	408, 566
BmuI	ACTGGG	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	852
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	2 cut(s)	278, 596
BpuMI	CCSGG	1 cut(s)	845
Bsa29I	ATCGAT	1 cut(s)	896
BsaJI	CCNNGG	2 cut(s)	380, 843
BsaWI	WCCGGW	1 cut(s)	358
BsaXI	ACNNNNNCTCC	8 cut(s)	85, 115, 247, 277, 510, 540, 839, 869
Bse1I	ACTGG	3 cut(s)	341, 424, 686
BseCI	ATCGAT	1 cut(s)	896
BseDI	CCNNGG	2 cut(s)	380, 843
BseGI	GGATG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	344, 476
BseNI	ACTGG	3 cut(s)	341, 424, 686
BseRI	GAGGAG	3 cut(s)	262, 357, 450
BseXI	GCAGC	4 cut(s)	655, 787, 800, 874
Bsh1236I	CGCG	1 cut(s)	550
BshFI	GGCC	2 cut(s)	152, 632
BshVI	ATCGAT	1 cut(s)	896
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	4 cut(s)	359, 396, 485, 845
BslFI	GGGAC	3 cut(s)	75, 440, 493
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	3 cut(s)	75, 440, 493
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	2 cut(s)	152, 632
BsoBI	CYCGRG	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	288, 615, 692
BspACI	CCGC	3 cut(s)	371, 374, 545
BspANI	GGCC	2 cut(s)	152, 632
BspCNI	CTCAG	2 cut(s)	343, 475
BspDI	ATCGAT	1 cut(s)	896
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	5 cut(s)	422, 455, 456, 483, 655
BspPI	GGATC	2 cut(s)	283, 700
BsrI	ACTGG	3 cut(s)	341, 424, 686
BssECI	CCNNGG	2 cut(s)	380, 843
BssMI	GATC	3 cut(s)	288, 615, 692
BssNAI	GTATAC	2 cut(s)	703, 773
BssT1I	CCWWGG	1 cut(s)	380
Bst1107I	GTATAC	2 cut(s)	703, 773
Bst4CI	ACNGT	3 cut(s)	700, 812, 904
Bst6I	CTCTTC	1 cut(s)	314
BstC8I	GCNNGC	2 cut(s)	387, 786
BstDEI	CTNAG	3 cut(s)	330, 462, 852
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	3 cut(s)	291, 618, 695
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	3 cut(s)	288, 615, 692
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 382, 554, 797
BstNSI	RCATGY	1 cut(s)	788
BstSCI	CCNGG	1 cut(s)	843
BstUI	CGCG	1 cut(s)	550
BstV1I	GCAGC	4 cut(s)	655, 787, 800, 874
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
BstZ17I	GTATAC	2 cut(s)	703, 773
Bsu15I	ATCGAT	1 cut(s)	896
BsuRI	GGCC	2 cut(s)	152, 632
BsuTUI	ATCGAT	1 cut(s)	896
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	387, 786
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	454
ClaI	ATCGAT	1 cut(s)	896
CviAII	CATG	3 cut(s)	125, 148, 785
DdeI	CTNAG	3 cut(s)	330, 462, 852
DpnI	GATC	3 cut(s)	290, 617, 694
DpnII	GATC	3 cut(s)	288, 615, 692
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
EciI	GGCGGA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	454
Eco88I	CYCGRG	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	604
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	3 cut(s)	128, 151, 788
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FaqI	GGGAC	3 cut(s)	75, 440, 493
FatI	CATG	3 cut(s)	124, 147, 784
FblI	GTMKAC	2 cut(s)	702, 772
Fnu4HI	GCNGC	6 cut(s)	374, 546, 669, 789, 801, 888
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	6 cut(s)	374, 546, 669, 789, 801, 888
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	6 cut(s)	374, 546, 669, 789, 801, 888
GsuI	CTGGAG	1 cut(s)	852
HaeIII	GGCC	2 cut(s)	152, 632
HapII	CCGG	4 cut(s)	359, 396, 485, 845
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	128, 151, 788
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	808
HindII	GTYRAC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	875
HinfI	GANTC	2 cut(s)	362, 848
HpaI	GTTAAC	1 cut(s)	808
HpaII	CCGG	4 cut(s)	359, 396, 485, 845
HphI	GGTGA	2 cut(s)	348, 610
Hpy166II	GTNNAC	3 cut(s)	703, 773, 808
Hpy188I	TCNGA	2 cut(s)	324, 434
Hpy188III	TCNNGA	4 cut(s)	295, 470, 479, 613
Hpy8I	GTNNAC	3 cut(s)	703, 773, 808
HpyAV	CCTTC	2 cut(s)	655, 731
HpyCH4III	ACNGT	3 cut(s)	700, 812, 904
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	557, 671, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 382, 554, 797
HpyF3I	CTNAG	3 cut(s)	330, 462, 852
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	3 cut(s)	128, 151, 788
HspAI	GCGC	1 cut(s)	548
KflI	GGGWCCC	1 cut(s)	454
KspAI	GTTAAC	1 cut(s)	808
Kzo9I	GATC	3 cut(s)	288, 615, 692
LmnI	GCTCC	2 cut(s)	481, 833
Lsp1109I	GCAGC	4 cut(s)	655, 787, 800, 874
LweI	GCATC	2 cut(s)	408, 566
MaeII	ACGT	1 cut(s)	474
MalI	GATC	3 cut(s)	290, 617, 694
MboI	GATC	3 cut(s)	288, 615, 692
MboII	GAAGA	8 cut(s)	149, 152, 301, 345, 421, 670, 743, 746
MflI	RGATCY	1 cut(s)	692
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	5 cut(s)	31, 110, 415, 496, 604
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	1 cut(s)	670
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	2 cut(s)	24, 807
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	4 cut(s)	359, 396, 485, 845
MspR9I	CCNGG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	4 cut(s)	129, 382, 554, 797
NciI	CCSGG	1 cut(s)	845
NdeII	GATC	3 cut(s)	288, 615, 692
NlaIII	CATG	3 cut(s)	128, 151, 788
NlaIV	GGNNCC	5 cut(s)	422, 455, 456, 483, 655
NspI	RCATGY	1 cut(s)	788
PaeI	GCATGC	1 cut(s)	788
PctI	GAATGC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	375, 547, 670, 790, 802, 889
PleI	GAGTC	1 cut(s)	856
PpsI	GAGTC	1 cut(s)	856
PpuMI	RGGWCCY	1 cut(s)	454
Psp5II	RGGWCCY	1 cut(s)	454
PspN4I	GGNNCC	5 cut(s)	422, 455, 456, 483, 655
PspPI	GGNCC	1 cut(s)	454
PspPPI	RGGWCCY	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	24, 807
SatI	GCNGC	6 cut(s)	374, 546, 669, 789, 801, 888
Sau3AI	GATC	3 cut(s)	288, 615, 692
Sau96I	GGNCC	1 cut(s)	454
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	1 cut(s)	845
SfaNI	GCATC	2 cut(s)	408, 566
SinI	GGWCC	1 cut(s)	454
SmlI	CTYRAG	2 cut(s)	293, 611
SmoI	CTYRAG	2 cut(s)	293, 611
SphI	GCATGC	1 cut(s)	788
Sse9I	AATT	5 cut(s)	31, 110, 415, 496, 604
SsiI	CCGC	3 cut(s)	371, 374, 545
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	3 cut(s)	700, 812, 904
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	2 cut(s)	602, 896
TasI	AATT	5 cut(s)	31, 110, 415, 496, 604
TauI	GCSGC	2 cut(s)	376, 548
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	24, 807
Tru9I	TTAA	2 cut(s)	24, 807
TseI	GCWGC	4 cut(s)	668, 788, 800, 887
TspDTI	ATGAA	2 cut(s)	141, 670
TspGWI	ACGGA	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	454
XapI	RAATTY	3 cut(s)	31, 110, 604
XceI	RCATGY	1 cut(s)	788
XmiI	GTMKAC	2 cut(s)	702, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.