Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003886

Physical Location & Seq

Genomic Coordinates Forward (+)

76006786 .. 76008275

Gene Structure 1490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0652700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGATTTTTGCTCCAATAGTAGGTGTGAACCACCACGGGCAAACCGTTGTTTTTGGATGTGCATTTTTGAGCGATGAGACCTTTGATTCGTTTGTTTGGTTGTTGAAAACATGGCTTGCAGCAATGCCCAAAAGTGCCCCGAATGTTATTATCACCAATCAAGATCAAGCAATGAGTAAGGCAATTGCTCATGTTTTGCCAAACACATTTCACAGGTATTGTGTGTGGCATATTCTGAAAAAATTTCCAGAGAAGACTAATGTAGCTTTTATGCAAGATTACTATGAACTTTTCAAGACATGTATATGGGATTCGGAGTGTGCAGAAGAATTTGAAAAGAGATGGTTTGAAGCATTGGAAAAAAGTCAACAGACAAATAATGAATGGTTAGAAAAAATGTTTGAATTGCGTGGCAGGTGGATTCCAGCATACGTAAATAAAAACTTTTTAGCAGGGATGTCAAGCAGCCAAAGAGTAGAATATGCACATGCATTCTTCAAGCGTTATTGTGATAAAGAAAACACCTTGATGGATTTTGTCACGCGTTTCAATAGGGCGGTTGCTCATCAGAGACATGAAGAATTGATTGAAGACCATAGAGATTTGAATGAGACACCTAACTTGAAATTAGGGATGCCAATGGAGGTCCAAATGGCTCAATTATATACCAAAAAGTACTTTCAGCACTTTCAAGCTCAGCTTCATGATGGTAATGGTTATATGGTAAATGCCGTAATGGAAGATGACAGTAGTTGTGTTTACAAGACTGAAAGGGTGTTTGCTGAAAACTTTAGGATGCGGACGCTTGTACATGATAAGGTATCAAACATAGTGACATGTAGTTGTAAAATGTTTGAATTTGAAGGTATTCCTTGCAGGCATATTTTGGCTCTGTTACGACTAAAACAGATTATGGAATTGCCAAAGGAATATATTCTACGAAGATGGACAAGGTTTTCAAGAATTCGTAGAGAAAGGTGCCAAGGGCAAGATGGTGCAGATAATTCATTAATAATGAGACACAACGGTATGTTCAAAATTGCATCCAATTTAATTGATGAGGCTGCAATTTCACCAGAGGGGACCGAACTTGTGCAAAAGGCATTTGAAGGACTTATGGAGCAAGTTAAGAAACTAAATATTTCTGTTGGCCAAGCTTCTATCAACAATTATTCAGTAGGAACTTTTGAAGAGAATCGCTTCCTAGATCCTTCTCAAGTGAAGACTAAAGGTAGTGGAAAACGCATAACATCATGGAGAGACAGGAAAAGAAAAATTAGACATTGTTCTAAATGTCAAAGTACTAAACATACTAAAAAGACATGCACATTTGATAGGTCAGAGATTGTGGAAAATGATGTCGACAAAGCATTGGGTGAACAAGATTACTTGGTTGATGAACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

468

Amino Acids

54.82

Weight (kDa)

8.3

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	1 - 81	2.7e-22	MULE transposase domain
SWIM	PF04434	276 - 300	9.5e-10	SWIM zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27390 AT5G27390 AT5G27390 AT5G27390
fragaria_vesca	FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310 FvH4_6g05310
malus_domestica	MD04G1209500.v1.1 MD12G1224100.v1.1
prunus_persica	Prupe.6G330500_v2.0.a1
pyrus_communis	pycom04g18560 pycom12g20960
rosa_chinensis	RchiOBHm_Chr3g0454051
rosa_laevigata	RLG00000025486
rosa_multiflora	Rmu_sc0012374.1_g000001 Rmu_sc0038647.1_g000001
rosa_roxburghii	Rroxscaffold_6G00430860
rosa_rugosa	Rorug02G0652500 Rorug02G0652600 Rorug02G0652700 Rorug02G0652800
rosa_samantha	Rh3AG055500 Rh3BG056900 Rh3CG056200 Rh3DG057500
rosa_wichuraiana	Rw3G004250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	978
AccI	GTMKAC	1 cut(s)	1362
AccII	CGCG	1 cut(s)	544
AciI	CCGC	2 cut(s)	557, 799
AclWI	GGATC	1 cut(s)	1202
AcoI	YGGCCR	1 cut(s)	1150
AcsI	RAATTY	4 cut(s)	242, 329, 857, 963
AfaI	GTAC	3 cut(s)	677, 810, 1303
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflIII	ACRYGT	3 cut(s)	299, 542, 836
AluBI	AGCT	4 cut(s)	266, 695, 700, 1157
AluI	AGCT	4 cut(s)	266, 695, 700, 1157
Alw26I	GTCTC	5 cut(s)	71, 565, 605, 1012, 1254
AlwI	GGATC	1 cut(s)	1202
AoxI	GGCC	1 cut(s)	1150
ApeKI	GCWGC	3 cut(s)	119, 465, 1064
ApoI	RAATTY	4 cut(s)	242, 329, 857, 963
ArsI	GACNNNNNNTTYG	2 cut(s)	70, 102
AseI	ATTAAT	1 cut(s)	1010
Asp700I	GAANNNNTTC	3 cut(s)	867, 933, 1199
AspS9I	GGNCC	2 cut(s)	646, 1083
AsuHPI	GGTGA	3 cut(s)	145, 1065, 1388
AvaII	GGWCC	2 cut(s)	646, 1083
BaeGI	GKGCMC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	1152
BanI	GGYRCC	1 cut(s)	978
BbsI	GAAGAC	3 cut(s)	260, 597, 1229
BbvI	GCAGC	3 cut(s)	131, 477, 1051
BccI	CCATC	5 cut(s)	336, 523, 701, 939, 986
BceAI	ACGGC	1 cut(s)	716
BcoDI	GTCTC	5 cut(s)	71, 565, 605, 1012, 1254
BfaI	CTAG	1 cut(s)	1205
BfuAI	ACCTGC	1 cut(s)	405
BisI	GCNGC	3 cut(s)	120, 466, 1065
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	3 cut(s)	121, 467, 1066
BmcAI	AGTACT	2 cut(s)	677, 1303
Bme18I	GGWCC	2 cut(s)	646, 1083
BmgT120I	GGNCC	2 cut(s)	646, 1083
BmiI	GGNNCC	2 cut(s)	980, 1084
BmsI	GCATC	3 cut(s)	624, 786, 1052
BpiI	GAAGAC	3 cut(s)	260, 597, 1229
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	1200
BsaAI	YACGTR	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	34, 982
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse3DI	GCAATG	2 cut(s)	129, 177
BseDI	CCNNGG	2 cut(s)	34, 982
BseGI	GGATG	5 cut(s)	62, 462, 639, 801, 1043
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseMI	GCAATG	2 cut(s)	129, 177
BseMII	CTCAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	131, 477, 1051
BsgI	GTGCAG	2 cut(s)	342, 1017
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	1 cut(s)	1152
BshNI	GGYRCC	1 cut(s)	978
BslFI	GGGAC	1 cut(s)	1096
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmAI	GTCTC	5 cut(s)	71, 565, 605, 1012, 1254
BsmFI	GGGAC	1 cut(s)	1096
BsmI	GAATGC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	1152
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	808
Bsp143I	GATC	2 cut(s)	163, 1207
Bsp1720I	GCTNAGC	1 cut(s)	696
BspACI	CCGC	2 cut(s)	557, 799
BspANI	GGCC	1 cut(s)	1152
BspCNI	CTCAG	1 cut(s)	709
BspFNI	CGCG	1 cut(s)	544
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	2 cut(s)	980, 1084
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	1202
BspT107I	GGYRCC	1 cut(s)	978
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	129, 177
BsrGI	TGTACA	1 cut(s)	808
BssECI	CCNNGG	2 cut(s)	34, 982
BssMI	GATC	2 cut(s)	163, 1207
BssT1I	CCWWGG	1 cut(s)	982
Bst4CI	ACNGT	3 cut(s)	46, 749, 1028
Bst6I	CTCTTC	1 cut(s)	1185
BstAUI	TGTACA	1 cut(s)	808
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	117, 878
BstDEI	CTNAG	1 cut(s)	696
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	5 cut(s)	62, 462, 639, 801, 1043
BstFNI	CGCG	1 cut(s)	544
BstKTI	GATC	2 cut(s)	166, 1210
BstMAI	GTCTC	5 cut(s)	71, 565, 605, 1012, 1254
BstMBI	GATC	2 cut(s)	163, 1207
BstNSI	RCATGY	4 cut(s)	303, 491, 840, 1326
BstSLI	GKGCMC	1 cut(s)	139
BstSNI	TACGTA	1 cut(s)	433
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	3 cut(s)	131, 477, 1051
BstV2I	GAAGAC	3 cut(s)	260, 597, 1229
BstX2I	RGATCY	1 cut(s)	1207
BstYI	RGATCY	1 cut(s)	1207
BsuRI	GGCC	1 cut(s)	1152
BtgI	CCRYGG	1 cut(s)	34
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	5 cut(s)	62, 462, 639, 801, 1043
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	117, 878
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	646, 1083
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	3 cut(s)	676, 809, 1302
CviQI	GTAC	3 cut(s)	676, 809, 1302
DdeI	CTNAG	1 cut(s)	696
DpnI	GATC	2 cut(s)	165, 1209
DpnII	GATC	2 cut(s)	163, 1207
EaeI	YGGCCR	1 cut(s)	1150
Eam1104I	CTCTTC	1 cut(s)	1185
EarI	CTCTTC	1 cut(s)	1185
Eco105I	TACGTA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	982
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	2 cut(s)	646, 1083
EcoRI	GAATTC	1 cut(s)	963
EcoT14I	CCWWGG	1 cut(s)	982
EcoT22I	ATGCAT	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	982
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FaqI	GGGAC	1 cut(s)	1096
FblI	GTMKAC	1 cut(s)	1362
Fnu4HI	GCNGC	3 cut(s)	120, 466, 1065
FokI	GGATG	5 cut(s)	69, 469, 646, 808, 1030
Fsp4HI	GCNGC	3 cut(s)	120, 466, 1065
FspBI	CTAG	1 cut(s)	1205
GluI	GCNGC	3 cut(s)	120, 466, 1065
HaeIII	GGCC	1 cut(s)	1152
HgaI	GACGC	1 cut(s)	811
HincII	GTYRAC	2 cut(s)	368, 1363
HindII	GTYRAC	2 cut(s)	368, 1363
HindIII	AAGCTT	1 cut(s)	1155
HinfI	GANTC	4 cut(s)	86, 311, 421, 1195
HphI	GGTGA	3 cut(s)	145, 1065, 1388
Hpy166II	GTNNAC	5 cut(s)	28, 368, 760, 1363, 1379
Hpy188I	TCNGA	4 cut(s)	237, 316, 570, 1342
Hpy188III	TCNNGA	5 cut(s)	161, 248, 295, 704, 960
Hpy8I	GTNNAC	5 cut(s)	28, 368, 760, 1363, 1379
HpyAV	CCTTC	3 cut(s)	857, 1103, 1221
HpyCH4III	ACNGT	3 cut(s)	46, 749, 1028
HpyCH4IV	ACGT	1 cut(s)	432
HpyF3I	CTNAG	1 cut(s)	696
HpySE526I	ACGT	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	163, 1207
LmnI	GCTCC	2 cut(s)	16, 1120
LpnPI	CCDG	8 cut(s)	199, 261, 400, 438, 438, 862, 1089, 1249
Lsp1109I	GCAGC	3 cut(s)	131, 477, 1051
LweI	GCATC	3 cut(s)	624, 786, 1052
MaeI	CTAG	1 cut(s)	1205
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	3 cut(s)	538, 832, 894
MalI	GATC	2 cut(s)	165, 1209
MboI	GATC	2 cut(s)	163, 1207
MboII	GAAGA	9 cut(s)	265, 338, 487, 590, 602, 752, 954, 1202, 1234
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	1 cut(s)	1207
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	1152
MluI	ACGCGT	1 cut(s)	542
MluNI	TGGCCA	1 cut(s)	1152
MnlI	CCTC	3 cut(s)	637, 1054, 1072
Mox20I	TGGCCA	1 cut(s)	1152
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	3 cut(s)	867, 933, 1199
MscI	TGGCCA	1 cut(s)	1152
MseI	TTAA	3 cut(s)	1010, 1052, 1128
MslI	CAYNNNNRTG	2 cut(s)	304, 527
Msp20I	TGGCCA	1 cut(s)	1152
MunI	CAATTG	1 cut(s)	183
Mva1269I	GAATGC	1 cut(s)	491
MvnI	CGCG	1 cut(s)	544
NdeII	GATC	2 cut(s)	163, 1207
NlaIV	GGNNCC	2 cut(s)	980, 1084
NmuCI	GTSAC	2 cut(s)	538, 832
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	4 cut(s)	303, 491, 840, 1326
PagI	TCATGA	1 cut(s)	703
PaqCI	CACCTGC	1 cut(s)	405
PciI	ACATGT	2 cut(s)	299, 836
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	491
PdmI	GAANNNNTTC	3 cut(s)	867, 933, 1199
PfeI	GAWTC	4 cut(s)	86, 311, 421, 1195
PkrI	GCNGC	3 cut(s)	121, 467, 1066
Ppu21I	YACGTR	1 cut(s)	433
PscI	ACATGT	2 cut(s)	299, 836
PshBI	ATTAAT	1 cut(s)	1010
PspN4I	GGNNCC	2 cut(s)	980, 1084
PspPI	GGNCC	2 cut(s)	646, 1083
PsuI	RGATCY	1 cut(s)	1207
RsaI	GTAC	3 cut(s)	677, 810, 1303
RsaNI	GTAC	3 cut(s)	676, 809, 1302
RseI	CAYNNNNRTG	2 cut(s)	304, 527
SalI	GTCGAC	1 cut(s)	1361
SaqAI	TTAA	3 cut(s)	1010, 1052, 1128
SatI	GCNGC	3 cut(s)	120, 466, 1065
Sau3AI	GATC	2 cut(s)	163, 1207
Sau96I	GGNCC	2 cut(s)	646, 1083
ScaI	AGTACT	2 cut(s)	677, 1303
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	624, 786, 1052
SinI	GGWCC	2 cut(s)	646, 1083
SmiMI	CAYNNNNRTG	2 cut(s)	304, 527
SmlI	CTYRAG	1 cut(s)	1215
SmoI	CTYRAG	1 cut(s)	1215
SnaBI	TACGTA	1 cut(s)	433
SsiI	CCGC	2 cut(s)	557, 799
SspI	AATATT	1 cut(s)	1141
SspMI	CTAG	1 cut(s)	1205
StyI	CCWWGG	1 cut(s)	982
TaaI	ACNGT	3 cut(s)	46, 749, 1028
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	1 cut(s)	1362
TaqII	GACCGA	1 cut(s)	1100
TatI	WGTACW	3 cut(s)	675, 808, 1301
TfiI	GAWTC	4 cut(s)	86, 311, 421, 1195
Tru1I	TTAA	3 cut(s)	1010, 1052, 1128
Tru9I	TTAA	3 cut(s)	1010, 1052, 1128
TseFI	GTSAC	2 cut(s)	538, 832
TseI	GCWGC	3 cut(s)	119, 465, 1064
Tsp45I	GTSAC	2 cut(s)	538, 832
TspDTI	ATGAA	5 cut(s)	300, 396, 591, 692, 996
VpaK11BI	GGWCC	2 cut(s)	646, 1083
VspI	ATTAAT	1 cut(s)	1010
XapI	RAATTY	4 cut(s)	242, 329, 857, 963
XceI	RCATGY	4 cut(s)	303, 491, 840, 1326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	989
XmiI	GTMKAC	1 cut(s)	1362
XmnI	GAANNNNTTC	3 cut(s)	867, 933, 1199
XspI	CTAG	1 cut(s)	1205
ZrmI	AGTACT	2 cut(s)	677, 1303
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.