FvH4_6g05310

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003886
Physical Location & Seq
Reverse (-)
2991260 .. 2994498
3239 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05310.t11

Sequence Viewer

Length: 753 bp
ATGGCCATTCTTCTCCTCTCCCTCCCTCCCCACCCATCAAACCCAAAACCCAAAATCTCAAACCCCACAACCCCAAAACTCACTTCAAAGCTTTGCATCACCAACAACACACCCACCTCCAGAAGAGACTTAATCCTCAAGACCACTTCCATCTTCCTCATTTCTTTGATTCCTCAACAATACCCAATTGCCCATTCTTCAACAGAAGCTTCACCTCCCCAAAAATCAATTCTTTCTGGCATTGCCAACACCAAGAGTTGGTTCCAGTTTTATGGTGATGGGTTTTCCATTAGAGTCCCTCCTCAATTTGAGGACATTATGGAGCCTGAGGATTACAATGCTGGATTGTCCCTTTATGGAGATAAGGCAAAGCCCAAGATCTTTTCGGCACGTTTTGCATCTTCTGATGGATCTGAGGTACTGAATGTTGTTATTAAGCCTTCCAACCAGTTCAAGATCACTTTTCTGGAGGCCAAAGACATAACCGATTTAGGCTCCTTGAAGGAGGTGGCGAAAATCTTTGTTCCATTTGGATCAACTTTATACTCTGCCCGAACACTAAAAATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTTGGTAGAGAAGGACAGCATGCAGCACTAGTAGCTGCTGTTAGCAGCGGAAGGACATATATTGCTGGAGCAACTGCTCCAGAGTCCAAGTGGGATGAGGACGGCGTGAAGCTTCGCTCCGCTGCTGTATCTATGACTGTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

251

Amino Acids

27.49

Weight (kDa)

8.99

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 92 - 249 5.1e-07 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 258
AciI CCGC 2 cut(s) 654, 726
AclWI GGATC 2 cut(s) 418, 541
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 4 cut(s) 87, 201, 454, 502
AhlI ACTAGT 1 cut(s) 634
AjuI GAANNNNNNNTTGG 8 cut(s) 67, 99, 178, 210, 213, 245, 245, 277
AluBI AGCT 4 cut(s) 91, 209, 641, 718
AluI AGCT 4 cut(s) 91, 209, 641, 718
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 418, 541
AoxI GGCC 2 cut(s) 3, 471
ApeKI GCWGC 4 cut(s) 629, 641, 651, 728
AsuHPI GGTGA 3 cut(s) 91, 204, 287
AxyI CCTNAGG 1 cut(s) 327
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 4 cut(s) 628, 641, 663, 715
BccI CCATC 4 cut(s) 43, 158, 272, 401
BceAI ACGGC 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 1 cut(s) 635
BglII AGATCT 1 cut(s) 378
BisI GCNGC 4 cut(s) 630, 642, 652, 729
BlsI GCNGC 4 cut(s) 631, 643, 653, 730
BmiI GGNNCC 3 cut(s) 263, 324, 496
BmsI GCATC 2 cut(s) 105, 407
BpmI CTGGAG 4 cut(s) 103, 488, 669, 693
BpuEI CTTGAG 1 cut(s) 122
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 265, 448
Bse21I CCTNAGG 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 240
BseGI GGATG 1 cut(s) 706
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 318, 405
BseNI ACTGG 2 cut(s) 265, 448
BseRI GAGGAG 2 cut(s) 5, 291
BseXI GCAGC 4 cut(s) 628, 641, 663, 715
BshFI GGCC 2 cut(s) 5, 473
BslFI GGGAC 2 cut(s) 281, 334
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 281, 334
BsnI GGCC 2 cut(s) 5, 473
Bsp143I GATC 4 cut(s) 378, 410, 456, 533
BspACI CCGC 2 cut(s) 654, 726
BspANI GGCC 2 cut(s) 5, 473
BspCNI CTCAG 2 cut(s) 319, 406
BspLI GGNNCC 3 cut(s) 263, 324, 496
BspPI GGATC 2 cut(s) 418, 541
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 265, 448
BssMI GATC 4 cut(s) 378, 410, 456, 533
Bst4CI ACNGT 1 cut(s) 745
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 2 cut(s) 327, 414
BstF5I GGATG 1 cut(s) 706
BstKTI GATC 4 cut(s) 381, 413, 459, 536
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 378, 410, 456, 533
BstMWI GCNNNNNNNGC 2 cut(s) 395, 638
BstNSI RCATGY 1 cut(s) 629
BstV1I GCAGC 4 cut(s) 628, 641, 663, 715
BstX2I RGATCY 2 cut(s) 378, 410
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 2 cut(s) 378, 410
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 5, 473
BtsCI GGATG 1 cut(s) 706
Cac8I GCNNGC 1 cut(s) 627
Csp6I GTAC 1 cut(s) 419
CviAII CATG 1 cut(s) 626
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 2 cut(s) 327, 414
DpnI GATC 4 cut(s) 380, 412, 458, 535
DpnII GATC 4 cut(s) 378, 410, 456, 533
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco81I CCTNAGG 1 cut(s) 327
FaeI CATG 1 cut(s) 629
FaqI GGGAC 2 cut(s) 281, 334
FatI CATG 1 cut(s) 625
Fnu4HI GCNGC 4 cut(s) 630, 642, 652, 729
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 4 cut(s) 630, 642, 652, 729
FspBI CTAG 1 cut(s) 635
GluI GCNGC 4 cut(s) 630, 642, 652, 729
GsuI CTGGAG 4 cut(s) 103, 488, 669, 693
HaeIII GGCC 2 cut(s) 5, 473
Hin1II CATG 1 cut(s) 629
HindIII AAGCTT 3 cut(s) 89, 207, 716
HinfI GANTC 3 cut(s) 169, 294, 689
HphI GGTGA 3 cut(s) 91, 204, 287
Hpy188I TCNGA 2 cut(s) 406, 415
Hpy188III TCNNGA 5 cut(s) 120, 139, 454, 467, 686
HpyAV CCTTC 5 cut(s) 450, 496, 572, 611, 651
HpyCH4III ACNGT 1 cut(s) 745
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 96, 398, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 638
HpyF3I CTNAG 2 cut(s) 327, 414
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 629
Kzo9I GATC 4 cut(s) 378, 410, 456, 533
LmnI GCTCC 5 cut(s) 322, 500, 674, 688, 728
LpnPI CCDG 9 cut(s) 133, 222, 278, 327, 339, 452, 461, 657, 699
Lsp1109I GCAGC 4 cut(s) 628, 641, 663, 715
LweI GCATC 2 cut(s) 105, 407
MaeI CTAG 1 cut(s) 635
MaeII ACGT 1 cut(s) 391
MalI GATC 4 cut(s) 380, 412, 458, 535
MboI GATC 4 cut(s) 378, 410, 456, 533
MboII GAAGA 6 cut(s) 135, 145, 189, 393, 584, 587
MfeI CAATTG 1 cut(s) 186
MflI RGATCY 2 cut(s) 378, 410
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 186, 228, 305
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 303, 698
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 131, 435
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 654, 728
MunI CAATTG 1 cut(s) 186
MwoI GCNNNNNNNGC 2 cut(s) 395, 638
NdeII GATC 4 cut(s) 378, 410, 456, 533
NlaIII CATG 1 cut(s) 629
NlaIV GGNNCC 3 cut(s) 263, 324, 496
NspI RCATGY 1 cut(s) 629
PaeI GCATGC 1 cut(s) 629
PfeI GAWTC 1 cut(s) 169
PflMI CCANNNNNTGG 1 cut(s) 258
PkrI GCNGC 4 cut(s) 631, 643, 653, 730
PleI GAGTC 2 cut(s) 302, 697
PpsI GAGTC 2 cut(s) 302, 697
PspN4I GGNNCC 3 cut(s) 263, 324, 496
PsuI RGATCY 2 cut(s) 378, 410
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 131, 435
SatI GCNGC 4 cut(s) 630, 642, 652, 729
Sau3AI GATC 4 cut(s) 378, 410, 456, 533
SchI GAGTC 2 cut(s) 303, 698
SfaNI GCATC 2 cut(s) 105, 407
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 634
SphI GCATGC 1 cut(s) 629
Sse9I AATT 3 cut(s) 186, 228, 305
SsiI CCGC 2 cut(s) 654, 726
SspMI CTAG 1 cut(s) 635
TaaI ACNGT 1 cut(s) 745
TaiI ACGT 1 cut(s) 394
TasI AATT 3 cut(s) 186, 228, 305
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 131, 435
Tru9I TTAA 2 cut(s) 131, 435
TseI GCWGC 4 cut(s) 629, 641, 651, 728
Van91I CCANNNNNTGG 1 cut(s) 258
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 693
XspI CTAG 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.