MD12G1224100.v1.1

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0003886
Physical Location & Seq
Forward (+)
30040022 .. 30043375
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1224100.v1.1.491

Sequence Viewer

Length: 753 bp
ATGGCCATTCTTCTTCTCTCCCTCTCTCCCCACCCACCAAATCCTCCCAAAAACCCTAATCCCACCACCCCAAGACCCACAATCTCTCTCCCCACCACCACCACTCCTACCTCCTCCAAAAGAAACTTGATCCTCAAGACAACCTCACTCTTCCTCATTTCTCTGACCCCTCAGCAATACCCAGTTGCCCATTCTTCACCGGAATCTCCTCCGCCGCCTCCAAGGCCGGCTCTTTCCGGCATCGCCAACACGAAAAATTGGTTCCAGTTCTTCGGAGATGGGTTCGCCATTAGGGTCCCTCCTCAGTTTCAGGACGTTCAGGAGCCCGAGGATTACAATTCTGGGTTGTCTCTTTATGGAGACAAGGTAAAGACCAAGACCTTTGCAGCACGTTTTGCATCTGCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCGAATTCACTCAAGATCACCTTTTTAGAGGCCAAAGACATAACGGATTTAGGTTCCTTGAAGGAGGCTGCAAAAATCTTCGTTCCAGTTGGATCTACTGTATACTCTGCCCGAGCTATAAAGATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTTGGTATACAACAACAGCATGCGGCACTTGTAGCTGCTGTTAACGGTGGAAAGACATATATCGCCGGAGCTACTGCCCCGGAGTCTAAGTGGAATGATGATGGCGTGAAGCTTCGCTCTGCTGCTATATCGATGACTGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

251

Amino Acids

27.18

Weight (kDa)

9.28

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 91 - 249 3.6e-09 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 543, 613
AciI CCGC 3 cut(s) 212, 215, 629
AclWI GGATC 2 cut(s) 124, 541
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 445
AgsI TTSAA 1 cut(s) 502
AluBI AGCT 4 cut(s) 557, 641, 677, 718
AluI AGCT 4 cut(s) 557, 641, 677, 718
Alw26I GTCTC 2 cut(s) 354, 354
AlwI GGATC 2 cut(s) 124, 541
Ama87I CYCGRG 2 cut(s) 326, 552
AoxI GGCC 3 cut(s) 3, 224, 471
ApeKI GCWGC 4 cut(s) 386, 509, 641, 728
ApoI RAATTY 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 2 cut(s) 189, 451
AvaI CYCGRG 2 cut(s) 326, 552
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 327
BbvCI CCTCAGC 1 cut(s) 171
BbvI GCAGC 4 cut(s) 398, 496, 628, 715
BccI CCATC 4 cut(s) 272, 401, 448, 701
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 2 cut(s) 354, 354
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 6 cut(s) 215, 387, 510, 630, 642, 729
BlsI GCNGC 6 cut(s) 216, 388, 511, 631, 643, 730
Bme1390I CCNGG 1 cut(s) 686
Bme18I GGWCC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 326, 552
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 5 cut(s) 263, 296, 297, 324, 496
BmrFI CCNGG 1 cut(s) 686
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 249, 407
BmuI ACTGGG 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 119, 437
BpuMI CCSGG 1 cut(s) 686
Bsa29I ATCGAT 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 221, 327, 684
BsaWI WCCGGW 1 cut(s) 199
BsaXI ACNNNNNCTCC 6 cut(s) 88, 118, 351, 381, 680, 710
Bse118I RCCGGY 1 cut(s) 226
Bse1I ACTGG 3 cut(s) 182, 265, 527
BseCI ATCGAT 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 221, 327, 684
BseMII CTCAG 2 cut(s) 185, 317
BseNI ACTGG 3 cut(s) 182, 265, 527
BseRI GAGGAG 3 cut(s) 103, 198, 291
BseXI GCAGC 4 cut(s) 398, 496, 628, 715
BshFI GGCC 3 cut(s) 5, 226, 473
BshVI ATCGAT 1 cut(s) 737
BsiHKCI CYCGRG 2 cut(s) 326, 552
BsiSI CCGG 5 cut(s) 200, 227, 237, 672, 686
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 2 cut(s) 354, 354
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 3 cut(s) 5, 226, 473
BsoBI CYCGRG 2 cut(s) 326, 552
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 3 cut(s) 129, 456, 533
BspACI CCGC 3 cut(s) 212, 215, 629
BspANI GGCC 3 cut(s) 5, 226, 473
BspCNI CTCAG 2 cut(s) 184, 316
BspDI ATCGAT 1 cut(s) 737
BspLI GGNNCC 5 cut(s) 263, 296, 297, 324, 496
BspPI GGATC 2 cut(s) 124, 541
BsrFI RCCGGY 1 cut(s) 226
BsrI ACTGG 3 cut(s) 182, 265, 527
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 221, 327, 684
BssMI GATC 3 cut(s) 129, 456, 533
BssNAI GTATAC 2 cut(s) 544, 614
BssT1I CCWWGG 1 cut(s) 221
Bst1107I GTATAC 2 cut(s) 544, 614
Bst4CI ACNGT 3 cut(s) 541, 653, 745
Bst6I CTCTTC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 228, 627
BstDEI CTNAG 3 cut(s) 171, 303, 693
BstKTI GATC 3 cut(s) 132, 459, 536
BstMAI GTCTC 2 cut(s) 354, 354
BstMBI GATC 3 cut(s) 129, 456, 533
BstMWI GCNNNNNNNGC 3 cut(s) 223, 395, 638
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 684
BstV1I GCAGC 4 cut(s) 398, 496, 628, 715
BstX2I RGATCY 1 cut(s) 533
BstYI RGATCY 1 cut(s) 533
BstZ17I GTATAC 2 cut(s) 544, 614
Bsu15I ATCGAT 1 cut(s) 737
BsuRI GGCC 3 cut(s) 5, 226, 473
BsuTUI ATCGAT 1 cut(s) 737
BtgZI GCGATG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 228, 627
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 737
CviAII CATG 1 cut(s) 626
DdeI CTNAG 3 cut(s) 171, 303, 693
DpnI GATC 3 cut(s) 131, 458, 535
DpnII GATC 3 cut(s) 129, 456, 533
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 295
Eco88I CYCGRG 2 cut(s) 326, 552
EcoO109I RGGNCCY 1 cut(s) 295
EcoRI GAATTC 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 629
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 625
FblI GTMKAC 2 cut(s) 543, 613
Fnu4HI GCNGC 6 cut(s) 215, 387, 510, 630, 642, 729
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 6 cut(s) 215, 387, 510, 630, 642, 729
GluI GCNGC 6 cut(s) 215, 387, 510, 630, 642, 729
HaeIII GGCC 3 cut(s) 5, 226, 473
HapII CCGG 5 cut(s) 200, 227, 237, 672, 686
Hin1II CATG 1 cut(s) 629
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 2 cut(s) 203, 689
HpaI GTTAAC 1 cut(s) 649
HpaII CCGG 5 cut(s) 200, 227, 237, 672, 686
HphI GGTGA 2 cut(s) 189, 451
Hpy166II GTNNAC 3 cut(s) 544, 614, 649
Hpy188I TCNGA 2 cut(s) 165, 275
Hpy188III TCNNGA 4 cut(s) 136, 311, 320, 454
Hpy8I GTNNAC 3 cut(s) 544, 614, 649
HpyAV CCTTC 2 cut(s) 496, 572
HpyCH4III ACNGT 3 cut(s) 541, 653, 745
HpyCH4IV ACGT 2 cut(s) 315, 391
HpyCH4V TGCA 3 cut(s) 386, 398, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 395, 638
HpyF3I CTNAG 3 cut(s) 171, 303, 693
HpySE526I ACGT 2 cut(s) 315, 391
Hsp92II CATG 1 cut(s) 629
KflI GGGWCCC 1 cut(s) 295
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
KspAI GTTAAC 1 cut(s) 649
Kzo9I GATC 3 cut(s) 129, 456, 533
LmnI GCTCC 2 cut(s) 322, 674
Lsp1109I GCAGC 4 cut(s) 398, 496, 628, 715
LweI GCATC 2 cut(s) 249, 407
MaeII ACGT 2 cut(s) 315, 391
MalI GATC 3 cut(s) 131, 458, 535
MboI GATC 3 cut(s) 129, 456, 533
MboII GAAGA 7 cut(s) 5, 142, 186, 262, 511, 584, 587
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 1 cut(s) 327
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 256, 337, 445
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 511
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 226
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 5 cut(s) 200, 227, 237, 672, 686
MspR9I CCNGG 1 cut(s) 686
MwoI GCNNNNNNNGC 3 cut(s) 223, 395, 638
NaeI GCCGGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 686
NdeII GATC 3 cut(s) 129, 456, 533
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 1 cut(s) 629
NlaIV GGNNCC 5 cut(s) 263, 296, 297, 324, 496
NspI RCATGY 1 cut(s) 629
PaeI GCATGC 1 cut(s) 629
PdiI GCCGGC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 6 cut(s) 216, 388, 511, 631, 643, 730
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspN4I GGNNCC 5 cut(s) 263, 296, 297, 324, 496
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PsuI RGATCY 1 cut(s) 533
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 6 cut(s) 215, 387, 510, 630, 642, 729
Sau3AI GATC 3 cut(s) 129, 456, 533
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 686
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 2 cut(s) 249, 407
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 134, 452
SmoI CTYRAG 2 cut(s) 134, 452
SphI GCATGC 1 cut(s) 629
Sse9I AATT 3 cut(s) 256, 337, 445
SsiI CCGC 3 cut(s) 212, 215, 629
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 541, 653, 745
TaiI ACGT 2 cut(s) 318, 394
TaqI TCGA 2 cut(s) 443, 737
TasI AATT 3 cut(s) 256, 337, 445
TauI GCSGC 2 cut(s) 217, 632
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TseI GCWGC 4 cut(s) 386, 509, 641, 728
TspGWI ACGGA 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 445
XceI RCATGY 1 cut(s) 629
XmiI GTMKAC 2 cut(s) 543, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.