Rroxscaffold_6G00430860

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003886
Physical Location & Seq
Reverse (-)
50952049 .. 50955192
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430860.1

Sequence Viewer

Length: 756 bp
ATGGCCATTCTTCTTCTCTCCCTCCCTCCCTACCCACTAAACCCTAAACCCAAAATCCCCAACCCCACAACCCCAAAGCTTACTTCAAAGCTCACCATCACCAACAACACACCCACCTCCAAAAGAGACTTAATCCTCAAGACCCCTTCCATCTTTCTCATTTCTTTGATCCCTCAGCAATACCCAACTGCCCATTCTTCAACAGAAGAAGCTTCACCTCCTCCAAAATCGATTCTTTCCGGCATTGCCAACACCAAAAGCTGGTTCCAGTTCTATGGTGATGGGTTTTCCATTAGGGTCCCTCCCCAGTTTGAGGACATTATGGAGCCTGAGGATTACAATGCTGGGTTGTCCCTTTATGGAGATAAGGCAAAGCCCAAGATCTTTTCGGCACGTTTTGCATCTTCTGATGGATCTGAAGTATTGAATGTTGTTATTAAACCTTCCAATCAGTTCAAGATCACCTTTTTAGAGGCCAAAGACATAACAGATTTAGGCTCCTTGAAGGAGGTGGCAAAAATCTTCGTTCCATTTGGGTCAACTTTATACTCTGCCCGAACACTGAAAATAAAGGAAGAAGAAGTTTTTAGGACCTATTATTTCTACGAGTTTGGTAGAGAAGGACAACATGCAGCACTAGTAGCTGCTGTTAGCAGCGGAAGGACATACATTGCTGGAGCAACAGCCCCACAGTCCAAGTGGGATGAGGACGGCGTGAAGCTTCGTTCCGCTGCTATATCAATGACTGTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

251

Amino Acids

27.66

Weight (kDa)

9.05

Isoelectric Point (pI)

35.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 93 - 250 1.3e-06 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AciI CCGC 2 cut(s) 657, 729
AclWI GGATC 2 cut(s) 163, 421
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 438
AfiI CCNNNNNNNGG 2 cut(s) 261, 313
AgsI TTSAA 5 cut(s) 87, 201, 427, 457, 505
AhlI ACTAGT 1 cut(s) 637
AjuI GAANNNNNNNTTGG 6 cut(s) 67, 99, 178, 210, 248, 280
AluBI AGCT 6 cut(s) 79, 91, 212, 261, 644, 721
AluI AGCT 6 cut(s) 79, 91, 212, 261, 644, 721
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 2 cut(s) 163, 421
AoxI GGCC 2 cut(s) 3, 474
ApeKI GCWGC 4 cut(s) 632, 644, 654, 731
AspS9I GGNCC 2 cut(s) 298, 591
AsuHPI GGTGA 5 cut(s) 85, 91, 207, 290, 454
AvaII GGWCC 2 cut(s) 298, 591
AxyI CCTNAGG 1 cut(s) 330
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 631, 644, 666, 718
BccI CCATC 4 cut(s) 104, 158, 275, 404
BceAI ACGGC 1 cut(s) 727
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 1 cut(s) 638
BglII AGATCT 1 cut(s) 381
BisI GCNGC 4 cut(s) 633, 645, 655, 732
BlsI GCNGC 4 cut(s) 634, 646, 656, 733
Bme18I GGWCC 2 cut(s) 298, 591
BmgT120I GGNCC 2 cut(s) 298, 591
BmiI GGNNCC 5 cut(s) 266, 299, 300, 327, 499
BmrI ACTGGG 1 cut(s) 301
BmsI GCATC 1 cut(s) 410
BmuI ACTGGG 1 cut(s) 301
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 122
Bsa29I ATCGAT 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 313
Bse1I ACTGG 2 cut(s) 268, 307
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 243, 669
BseCI ATCGAT 1 cut(s) 230
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 261, 313
BseMI GCAATG 2 cut(s) 243, 669
BseMII CTCAG 2 cut(s) 188, 321
BseNI ACTGG 2 cut(s) 268, 307
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 4 cut(s) 631, 644, 666, 718
BseYI CCCAGC 1 cut(s) 344
BshFI GGCC 2 cut(s) 5, 476
BshVI ATCGAT 1 cut(s) 230
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 284, 337
BslI CCNNNNNNNGG 2 cut(s) 261, 313
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 284, 337
BsnI GGCC 2 cut(s) 5, 476
Bsp143I GATC 4 cut(s) 168, 381, 413, 459
BspACI CCGC 2 cut(s) 657, 729
BspANI GGCC 2 cut(s) 5, 476
BspCNI CTCAG 2 cut(s) 187, 322
BspDI ATCGAT 1 cut(s) 230
BspLI GGNNCC 5 cut(s) 266, 299, 300, 327, 499
BspPI GGATC 2 cut(s) 163, 421
BsrDI GCAATG 2 cut(s) 243, 669
BsrI ACTGG 2 cut(s) 268, 307
BssMI GATC 4 cut(s) 168, 381, 413, 459
Bst4CI ACNGT 2 cut(s) 693, 748
BstAPI GCANNNNNTGC 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 174, 330
BstF5I GGATG 1 cut(s) 709
BstKTI GATC 4 cut(s) 171, 384, 416, 462
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 4 cut(s) 168, 381, 413, 459
BstMWI GCNNNNNNNGC 2 cut(s) 398, 641
BstNSI RCATGY 1 cut(s) 632
BstV1I GCAGC 4 cut(s) 631, 644, 666, 718
BstX2I RGATCY 2 cut(s) 381, 413
BstXI CCANNNNNNTGG 1 cut(s) 275
BstYI RGATCY 2 cut(s) 381, 413
Bsu15I ATCGAT 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 2 cut(s) 5, 476
BsuTUI ATCGAT 1 cut(s) 230
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 298, 591
ClaI ATCGAT 1 cut(s) 230
CviAII CATG 1 cut(s) 629
DdeI CTNAG 2 cut(s) 174, 330
DpnI GATC 4 cut(s) 170, 383, 415, 461
DpnII GATC 4 cut(s) 168, 381, 413, 459
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 2 cut(s) 298, 591
Eco57I CTGAAG 1 cut(s) 438
Eco81I CCTNAGG 1 cut(s) 330
EcoO109I RGGNCCY 2 cut(s) 298, 591
FaeI CATG 1 cut(s) 632
FaiI YATR 9 cut(s) 276, 323, 360, 485, 547, 630, 667, 737, 754
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 2 cut(s) 284, 337
FatI CATG 1 cut(s) 628
Fnu4HI GCNGC 4 cut(s) 633, 645, 655, 732
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 4 cut(s) 633, 645, 655, 732
FspBI CTAG 1 cut(s) 638
GluI GCNGC 4 cut(s) 633, 645, 655, 732
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 2 cut(s) 5, 476
HapII CCGG 1 cut(s) 240
Hin1II CATG 1 cut(s) 632
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HindIII AAGCTT 3 cut(s) 77, 210, 719
HinfI GANTC 1 cut(s) 232
HpaII CCGG 1 cut(s) 240
HphI GGTGA 5 cut(s) 85, 91, 207, 290, 454
Hpy166II GTNNAC 1 cut(s) 540
Hpy188I TCNGA 2 cut(s) 409, 418
Hpy188III TCNNGA 2 cut(s) 139, 457
Hpy8I GTNNAC 1 cut(s) 540
HpyAV CCTTC 5 cut(s) 156, 453, 499, 614, 654
HpyCH4III ACNGT 2 cut(s) 693, 748
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 401, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 641
HpyF3I CTNAG 2 cut(s) 174, 330
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 1 cut(s) 632
KflI GGGWCCC 1 cut(s) 298
Kzo9I GATC 4 cut(s) 168, 381, 413, 459
LmnI GCTCC 3 cut(s) 325, 503, 677
LpnPI CCDG 7 cut(s) 247, 253, 281, 320, 330, 342, 660
Lsp1109I GCAGC 4 cut(s) 631, 644, 666, 718
LweI GCATC 1 cut(s) 410
MaeI CTAG 1 cut(s) 638
MaeII ACGT 1 cut(s) 394
MalI GATC 4 cut(s) 170, 383, 415, 461
MboI GATC 4 cut(s) 168, 381, 413, 459
MboII GAAGA 7 cut(s) 5, 189, 218, 396, 514, 587, 590
MflI RGATCY 2 cut(s) 381, 413
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 131, 438
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 657, 731
MspI CCGG 1 cut(s) 240
MwoI GCNNNNNNNGC 2 cut(s) 398, 641
NdeII GATC 4 cut(s) 168, 381, 413, 459
NlaIII CATG 1 cut(s) 632
NlaIV GGNNCC 5 cut(s) 266, 299, 300, 327, 499
NspI RCATGY 1 cut(s) 632
PfeI GAWTC 1 cut(s) 232
PflMI CCANNNNNTGG 1 cut(s) 261
PkrI GCNGC 4 cut(s) 634, 646, 656, 733
PpuMI RGGWCCY 2 cut(s) 298, 591
Psp5II RGGWCCY 2 cut(s) 298, 591
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 5 cut(s) 266, 299, 300, 327, 499
PspPI GGNCC 2 cut(s) 298, 591
PspPPI RGGWCCY 2 cut(s) 298, 591
PsuI RGATCY 2 cut(s) 381, 413
SaqAI TTAA 2 cut(s) 131, 438
SatI GCNGC 4 cut(s) 633, 645, 655, 732
Sau3AI GATC 4 cut(s) 168, 381, 413, 459
Sau96I GGNCC 2 cut(s) 298, 591
SfaNI GCATC 1 cut(s) 410
SinI GGWCC 2 cut(s) 298, 591
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
SpeI ACTAGT 1 cut(s) 637
SsiI CCGC 2 cut(s) 657, 729
SspMI CTAG 1 cut(s) 638
TaaI ACNGT 2 cut(s) 693, 748
TaiI ACGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 230
TfiI GAWTC 1 cut(s) 232
Tru1I TTAA 2 cut(s) 131, 438
Tru9I TTAA 2 cut(s) 131, 438
TscAI CASTG 1 cut(s) 567
TseI GCWGC 4 cut(s) 632, 644, 654, 731
TspRI CASTG 1 cut(s) 567
Van91I CCANNNNNTGG 1 cut(s) 261
VpaK11BI GGWCC 2 cut(s) 298, 591
XceI RCATGY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 696
XspI CTAG 1 cut(s) 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.