RchiOBHm_Chr3g0454051

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0003886
Physical Location & Seq
Reverse (-)
4265272 .. 4268978
3707 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42108

Sequence Viewer

Length: 978 bp
ATGAAATCAGACCCACATATGCCAACAAGGCTAGTATATAGCATATACACTGAAAGAGTGGAAGAATTTCAGTTTAAAAGACTAAAAAGACCCTTTTGGTGTATCCAAATACCTAAAGCTAACCTCTTTCCCAATCCTGACATACAAAAACCCCAGGTTGTGTGTCCCCACATTATCTCCCTCCAAATTTTCAACAGCCATGAATACAATCCTCATTCTCTCATGGCCATTCTTCTCCTCTCCCTCCCTCCCAACCCACTAAACCCTAAACCCAAAATCGCCAACCCCACAACCCCAAAGCTTACTTCAAAGCTCACCATCACCAACAACACACCCATCTCCAAAAGAGACTTAATCCTCAAGACCACTTCCATCTTTCTCATTTCTTTGATCCCTCAGCAATACCCAACTGCCCATTCTTCAACAGAAGAAGCTTCACCTCCTCCAAAATCGATTCTTTCCGGCATTGCCAACACCAAAAGCTGGTTCCAGTTCTATGGTGATGGGTTTTCCATTAGGGTCCCTCCTCAGTTTGAGGACATTATGGAGCCTGAGGATTACAATGCTGGATTGTCCCTTTATGGAGATAAGGCAAAGCCCAAGATCTTTTCGGCACGTTTTGCATCTTCTGATGGATCTGAGGTAGTGAATGTTGTTATTAAACCTTCCAATCAGTTCAAGATCACCTTTTTAGAGGCCAAAGACATAACAGATTTAGGCTCCTTGAAGGAGGTGGCAAAAATCTTCGTTCCATTTGGGTCAACTTTATACTCTGCCCGAACACTGAAAATAAAGGAAGAAGAAGGTTTTAGGACCTATTATTTCTACGAGTTTGGTAGAGAAGGACAACATGCAGCACTAGTAGCTGCTGTTAGCAGCGGAAGGACATACATTGCTGGAGCAACAGCCCCACAGTCCAAGTGGGATGAGGACGGCGTGAAGCTTCGTTCCGCTGCTATATCAATGACTGTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

325

Amino Acids

36.42

Weight (kDa)

9.17

Isoelectric Point (pI)

36.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 167 - 324 2.1e-06 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 483
AciI CCGC 2 cut(s) 879, 951
AclWI GGATC 2 cut(s) 385, 643
AcoI YGGCCR 1 cut(s) 225
AcsI RAATTY 2 cut(s) 65, 186
AfiI CCNNNNNNNGG 1 cut(s) 483
AgsI TTSAA 5 cut(s) 193, 309, 423, 679, 727
AhlI ACTAGT 1 cut(s) 859
AjnI CCWGG 1 cut(s) 153
AjuI GAANNNNNNNTTGG 6 cut(s) 289, 321, 400, 432, 470, 502
AluBI AGCT 7 cut(s) 119, 301, 313, 434, 483, 866, 943
AluI AGCT 7 cut(s) 119, 301, 313, 434, 483, 866, 943
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 2 cut(s) 385, 643
AoxI GGCC 2 cut(s) 225, 696
ApeKI GCWGC 4 cut(s) 854, 866, 876, 953
ApoI RAATTY 2 cut(s) 65, 186
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 520, 813
AsuHPI GGTGA 5 cut(s) 307, 313, 429, 512, 676
AvaII GGWCC 2 cut(s) 520, 813
AxyI CCTNAGG 1 cut(s) 552
BalI TGGCCA 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 853, 866, 888, 940
BccI CCATC 5 cut(s) 326, 344, 380, 497, 626
BceAI ACGGC 1 cut(s) 949
BciT130I CCWGG 1 cut(s) 155
BciVI GTATCC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 342
BcuI ACTAGT 1 cut(s) 859
BfaI CTAG 2 cut(s) 32, 860
BfuI GTATCC 1 cut(s) 113
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 603
BisI GCNGC 4 cut(s) 855, 867, 877, 954
BlsI GCNGC 4 cut(s) 856, 868, 878, 955
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 520, 813
BmgT120I GGNCC 2 cut(s) 520, 813
BmiI GGNNCC 5 cut(s) 488, 521, 522, 549, 721
BmrFI CCNGG 1 cut(s) 155
BmsI GCATC 1 cut(s) 632
BpmI CTGGAG 1 cut(s) 918
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 344
Bsa29I ATCGAT 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 153
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 1 cut(s) 483
Bse1I ACTGG 1 cut(s) 490
Bse21I CCTNAGG 1 cut(s) 552
Bse3DI GCAATG 2 cut(s) 465, 891
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 452
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 931
BseLI CCNNNNNNNGG 1 cut(s) 483
BseMI GCAATG 2 cut(s) 465, 891
BseMII CTCAG 4 cut(s) 410, 542, 543, 630
BseNI ACTGG 1 cut(s) 490
BseRI GAGGAG 3 cut(s) 227, 432, 516
BseXI GCAGC 4 cut(s) 853, 866, 888, 940
BshFI GGCC 2 cut(s) 227, 698
BshVI ATCGAT 1 cut(s) 452
BsiSI CCGG 1 cut(s) 462
BslFI GGGAC 3 cut(s) 150, 506, 559
BslI CCNNNNNNNGG 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 3 cut(s) 150, 506, 559
BsnI GGCC 2 cut(s) 227, 698
Bsp143I GATC 4 cut(s) 390, 603, 635, 681
BspACI CCGC 2 cut(s) 879, 951
BspANI GGCC 2 cut(s) 227, 698
BspCNI CTCAG 4 cut(s) 409, 541, 544, 631
BspDI ATCGAT 1 cut(s) 452
BspLI GGNNCC 5 cut(s) 488, 521, 522, 549, 721
BspPI GGATC 2 cut(s) 385, 643
BsrDI GCAATG 2 cut(s) 465, 891
BsrI ACTGG 1 cut(s) 490
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 4 cut(s) 390, 603, 635, 681
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 915, 970
BstAPI GCANNNNNTGC 1 cut(s) 620
BstDEI CTNAG 4 cut(s) 396, 528, 552, 639
BstF5I GGATG 1 cut(s) 931
BstKTI GATC 4 cut(s) 393, 606, 638, 684
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 4 cut(s) 390, 603, 635, 681
BstMWI GCNNNNNNNGC 3 cut(s) 28, 620, 863
BstNI CCWGG 1 cut(s) 155
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 4 cut(s) 853, 866, 888, 940
BstX2I RGATCY 2 cut(s) 603, 635
BstXI CCANNNNNNTGG 1 cut(s) 497
BstYI RGATCY 2 cut(s) 603, 635
Bsu15I ATCGAT 1 cut(s) 452
Bsu36I CCTNAGG 1 cut(s) 552
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 227, 698
BsuTUI ATCGAT 1 cut(s) 452
BtsCI GGATG 1 cut(s) 931
BtsIMutI CAGTG 2 cut(s) 48, 782
Cfr13I GGNCC 2 cut(s) 520, 813
ClaI ATCGAT 1 cut(s) 452
CviAII CATG 3 cut(s) 200, 223, 851
DdeI CTNAG 4 cut(s) 396, 528, 552, 639
DpnI GATC 4 cut(s) 392, 605, 637, 683
DpnII GATC 4 cut(s) 390, 603, 635, 681
DraI TTTAAA 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 520, 813
Eco81I CCTNAGG 1 cut(s) 552
EcoO109I RGGNCCY 2 cut(s) 520, 813
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 203, 226, 854
FalI AAGNNNNNCTT 2 cut(s) 671, 703
FaqI GGGAC 3 cut(s) 150, 506, 559
FatI CATG 3 cut(s) 199, 222, 850
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 4 cut(s) 855, 867, 877, 954
FokI GGATG 1 cut(s) 938
Fsp4HI GCNGC 4 cut(s) 855, 867, 877, 954
FspBI CTAG 2 cut(s) 32, 860
GluI GCNGC 4 cut(s) 855, 867, 877, 954
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 2 cut(s) 227, 698
HapII CCGG 1 cut(s) 462
Hin1II CATG 3 cut(s) 203, 226, 854
HincII GTYRAC 1 cut(s) 762
HindII GTYRAC 1 cut(s) 762
HindIII AAGCTT 3 cut(s) 299, 432, 941
HinfI GANTC 1 cut(s) 454
HpaII CCGG 1 cut(s) 462
HphI GGTGA 5 cut(s) 307, 313, 429, 512, 676
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 3 cut(s) 10, 631, 640
Hpy188III TCNNGA 3 cut(s) 137, 361, 679
Hpy8I GTNNAC 1 cut(s) 762
HpyAV CCTTC 5 cut(s) 675, 721, 797, 836, 876
HpyCH4III ACNGT 2 cut(s) 915, 970
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 2 cut(s) 623, 854
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 620, 863
HpyF3I CTNAG 4 cut(s) 396, 528, 552, 639
HpySE526I ACGT 1 cut(s) 616
Hsp92II CATG 3 cut(s) 203, 226, 854
KflI GGGWCCC 1 cut(s) 520
Kzo9I GATC 4 cut(s) 390, 603, 635, 681
LmnI GCTCC 3 cut(s) 547, 725, 899
LpnPI CCDG 9 cut(s) 140, 150, 167, 469, 475, 503, 552, 564, 882
Lsp1109I GCAGC 4 cut(s) 853, 866, 888, 940
LweI GCATC 1 cut(s) 632
MaeI CTAG 2 cut(s) 32, 860
MaeII ACGT 1 cut(s) 616
MalI GATC 4 cut(s) 392, 605, 637, 683
MboI GATC 4 cut(s) 390, 603, 635, 681
MboII GAAGA 8 cut(s) 74, 224, 411, 440, 618, 736, 809, 812
MflI RGATCY 2 cut(s) 603, 635
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 65, 186
MluNI TGGCCA 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 227
MseI TTAA 3 cut(s) 75, 353, 660
Msp20I TGGCCA 1 cut(s) 227
MspA1I CMGCKG 2 cut(s) 879, 953
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 28, 620, 863
NdeI CATATG 1 cut(s) 18
NdeII GATC 4 cut(s) 390, 603, 635, 681
NlaIII CATG 3 cut(s) 203, 226, 854
NlaIV GGNNCC 5 cut(s) 488, 521, 522, 549, 721
NspI RCATGY 1 cut(s) 854
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 454
PflMI CCANNNNNTGG 1 cut(s) 483
PkrI GCNGC 4 cut(s) 856, 868, 878, 955
PpuMI RGGWCCY 2 cut(s) 520, 813
Psp5II RGGWCCY 2 cut(s) 520, 813
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 5 cut(s) 488, 521, 522, 549, 721
PspPI GGNCC 2 cut(s) 520, 813
PspPPI RGGWCCY 2 cut(s) 520, 813
PsuI RGATCY 2 cut(s) 603, 635
SaqAI TTAA 3 cut(s) 75, 353, 660
SatI GCNGC 4 cut(s) 855, 867, 877, 954
Sau3AI GATC 4 cut(s) 390, 603, 635, 681
Sau96I GGNCC 2 cut(s) 520, 813
ScrFI CCNGG 1 cut(s) 155
SfaNI GCATC 1 cut(s) 632
SinI GGWCC 2 cut(s) 520, 813
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SpeI ACTAGT 1 cut(s) 859
Sse9I AATT 2 cut(s) 65, 186
SsiI CCGC 2 cut(s) 879, 951
SspMI CTAG 2 cut(s) 32, 860
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 915, 970
TaiI ACGT 1 cut(s) 619
TaqI TCGA 1 cut(s) 452
TasI AATT 2 cut(s) 65, 186
TfiI GAWTC 1 cut(s) 454
Tru1I TTAA 3 cut(s) 75, 353, 660
Tru9I TTAA 3 cut(s) 75, 353, 660
TscAI CASTG 2 cut(s) 55, 789
TseI GCWGC 4 cut(s) 854, 866, 876, 953
TspDTI ATGAA 2 cut(s) 17, 216
TspRI CASTG 2 cut(s) 55, 789
Van91I CCANNNNNTGG 1 cut(s) 483
VpaK11BI GGWCC 2 cut(s) 520, 813
XapI RAATTY 2 cut(s) 65, 186
XceI RCATGY 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 918
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 32, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.