MD04G1209500.v1.1

Mog1 PsbP DUF1795-like photosystem II reaction center PsbP family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0003886
Physical Location & Seq
Forward (+)
29451144 .. 29454591
3448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1209500.v1.1.491

Sequence Viewer

Length: 750 bp
ATGGCCATTCTTCTTCTCTCCCTCTCTCCCCACCCACCAAATCCTCCCCAAAACCCTAATCCCACTACCCCAAAACCCACAATCTCTCTCCCCACCAGCACTCCCGCCTCCTCCAAAAGAAACTTGATCCTCAAGACAACCTCCCTCTTCCTCATTTCTCTGACCCCTCAGCAATACCCAGTTGCCCATTCTTCACCACAAGCTCCACCGCCGCCTCCAAGACCCGCCCTTTCCGGCATCTCCAACACGAAAAACTGGTTCCAGTTCTTCGGCGATGGGTTCGCCATTAGGGTCCCTCCCCAGTTTCAGGACGTTCAGGAGCCTGAGGATTACAACTCGGGATTGTCCCTTTATGGAGATAAGGTAAAGCCCAAGACCTTCGCTGCGCGTTTTGCATCTGCTGATGGATATGAGGTTGTGAGTGTTGTTATTCGCCCATCCAATTCACTCAAGATCACCTTTTTAGAGGCCAAAGACATAACAGATTTAGGTTCCTTGAAGGAGGCAGCAAAAATCTTCATTCCAGTTGGATCAACTGTATACTCTGCCCGAGCTATAAGGATAAAGGAAGAAGAAGGTTTTAGGACTTATTATTTCTACGAGTTTGGTGTGCAAGAACAGCATGCAGCGCTTGTAGCTGCTGTTAACGGTGGAAAGACATACATCGCTGGAGCAACTGCCCCGCAGTCTAAGTGGAACGATGATGGCGTGAAGCTTCGCTCAGCTGCTATCTCCATGACTGTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PsbP

Protein Analysis

250

Amino Acids

27.03

Weight (kDa)

9.3

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbP PF01789 90 - 248 1.6e-08 PsbP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 540
AccII CGCG 1 cut(s) 388
AciI CCGC 5 cut(s) 105, 209, 212, 225, 683
AclWI GGATC 2 cut(s) 121, 538
AcoI YGGCCR 1 cut(s) 3
AfeI AGCGCT 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 499
AluBI AGCT 5 cut(s) 203, 554, 638, 715, 725
AluI AGCT 5 cut(s) 203, 554, 638, 715, 725
AlwI GGATC 2 cut(s) 121, 538
Ama87I CYCGRG 2 cut(s) 337, 549
Aor51HI AGCGCT 1 cut(s) 630
AoxI GGCC 2 cut(s) 3, 468
ApeKI GCWGC 5 cut(s) 383, 506, 626, 638, 725
AspLEI GCGC 2 cut(s) 388, 631
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 186, 448
AvaI CYCGRG 2 cut(s) 337, 549
AvaII GGWCC 1 cut(s) 292
AxyI CCTNAGG 1 cut(s) 324
BalI TGGCCA 1 cut(s) 5
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 5 cut(s) 370, 518, 625, 638, 712
BccI CCATC 4 cut(s) 269, 398, 445, 698
BfmI CTRYAG 1 cut(s) 746
BfoI RGCGCY 1 cut(s) 632
BisI GCNGC 6 cut(s) 212, 384, 507, 627, 639, 726
BlpI GCTNAGC 1 cut(s) 721
BlsI GCNGC 6 cut(s) 213, 385, 508, 628, 640, 727
Bme18I GGWCC 1 cut(s) 292
BmeT110I CYCGRG 2 cut(s) 337, 549
BmgT120I GGNCC 1 cut(s) 292
BmiI GGNNCC 5 cut(s) 260, 293, 294, 321, 493
BmrI ACTGGG 2 cut(s) 173, 295
BmsI GCATC 2 cut(s) 246, 404
BmuI ACTGGG 2 cut(s) 173, 295
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 721
BpuEI CTTGAG 2 cut(s) 116, 434
BsaXI ACNNNNNCTCC 4 cut(s) 85, 115, 348, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 5 cut(s) 179, 260, 262, 301, 524
Bse21I CCTNAGG 1 cut(s) 324
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 182, 315, 735
BseNI ACTGG 5 cut(s) 179, 260, 262, 301, 524
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 5 cut(s) 370, 518, 625, 638, 712
Bsh1236I CGCG 1 cut(s) 388
BshFI GGCC 2 cut(s) 5, 470
BsiHKCI CYCGRG 2 cut(s) 337, 549
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 2 cut(s) 278, 331
BslI CCNNNNNNNGG 1 cut(s) 307
BsmFI GGGAC 2 cut(s) 278, 331
BsnI GGCC 2 cut(s) 5, 470
BsoBI CYCGRG 2 cut(s) 337, 549
Bsp143I GATC 3 cut(s) 126, 453, 530
Bsp1720I GCTNAGC 1 cut(s) 721
BspACI CCGC 5 cut(s) 105, 209, 212, 225, 683
BspANI GGCC 2 cut(s) 5, 470
BspCNI CTCAG 3 cut(s) 181, 316, 734
BspFNI CGCG 1 cut(s) 388
BspLI GGNNCC 5 cut(s) 260, 293, 294, 321, 493
BspPI GGATC 2 cut(s) 121, 538
BsrI ACTGG 5 cut(s) 179, 260, 262, 301, 524
BssMI GATC 3 cut(s) 126, 453, 530
BssNAI GTATAC 1 cut(s) 541
Bst1107I GTATAC 1 cut(s) 541
Bst4CI ACNGT 3 cut(s) 538, 650, 742
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 4 cut(s) 168, 324, 690, 721
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 1 cut(s) 388
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 2 cut(s) 388, 631
BstKTI GATC 3 cut(s) 129, 456, 533
BstMBI GATC 3 cut(s) 126, 453, 530
BstMWI GCNNNNNNNGC 4 cut(s) 392, 619, 628, 635
BstNSI RCATGY 1 cut(s) 626
BstSFI CTRYAG 1 cut(s) 746
BstUI CGCG 1 cut(s) 388
BstV1I GCAGC 5 cut(s) 370, 518, 625, 638, 712
BstZ17I GTATAC 1 cut(s) 541
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 5, 470
BtgZI GCGATG 2 cut(s) 288, 649
BtsCI GGATG 1 cut(s) 437
Cac8I GCNNGC 1 cut(s) 624
CfoI GCGC 2 cut(s) 388, 631
Cfr13I GGNCC 1 cut(s) 292
CviAII CATG 2 cut(s) 623, 736
CviJI RGCY 9 cut(s) 5, 203, 322, 370, 470, 554, 638, 715, 725
CviKI_1 RGCY 9 cut(s) 5, 203, 322, 370, 470, 554, 638, 715, 725
DdeI CTNAG 4 cut(s) 168, 324, 690, 721
DpnI GATC 3 cut(s) 128, 455, 532
DpnII GATC 3 cut(s) 126, 453, 530
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 292
Eco47III AGCGCT 1 cut(s) 630
Eco81I CCTNAGG 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 337, 549
EcoO109I RGGNCCY 1 cut(s) 292
FaeI CATG 2 cut(s) 626, 739
FaiI YATR 9 cut(s) 354, 411, 479, 541, 557, 624, 661, 737, 748
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 2 cut(s) 278, 331
FatI CATG 2 cut(s) 622, 735
FauI CCCGC 3 cut(s) 112, 232, 690
FblI GTMKAC 1 cut(s) 540
Fnu4HI GCNGC 6 cut(s) 212, 384, 507, 627, 639, 726
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 6 cut(s) 212, 384, 507, 627, 639, 726
GlaI GCGC 2 cut(s) 387, 630
GluI GCNGC 6 cut(s) 212, 384, 507, 627, 639, 726
GsuI CTGGAG 1 cut(s) 690
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 2 cut(s) 5, 470
HapII CCGG 1 cut(s) 234
HhaI GCGC 2 cut(s) 388, 631
Hin1II CATG 2 cut(s) 626, 739
Hin6I GCGC 2 cut(s) 386, 629
HinP1I GCGC 2 cut(s) 386, 629
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HindIII AAGCTT 1 cut(s) 713
HpaI GTTAAC 1 cut(s) 646
HpaII CCGG 1 cut(s) 234
HphI GGTGA 2 cut(s) 186, 448
Hpy166II GTNNAC 2 cut(s) 541, 646
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 5 cut(s) 133, 308, 317, 339, 451
Hpy8I GTNNAC 2 cut(s) 541, 646
HpyAV CCTTC 3 cut(s) 388, 493, 569
HpyCH4III ACNGT 3 cut(s) 538, 650, 742
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 3 cut(s) 395, 613, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 619, 628, 635
HpyF3I CTNAG 4 cut(s) 168, 324, 690, 721
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 2 cut(s) 626, 739
HspAI GCGC 2 cut(s) 386, 629
KflI GGGWCCC 1 cut(s) 292
KspAI GTTAAC 1 cut(s) 646
Kzo9I GATC 3 cut(s) 126, 453, 530
LmnI GCTCC 3 cut(s) 208, 319, 671
Lsp1109I GCAGC 5 cut(s) 370, 518, 625, 638, 712
LweI GCATC 2 cut(s) 246, 404
MaeII ACGT 1 cut(s) 312
MalI GATC 3 cut(s) 128, 455, 532
MboI GATC 3 cut(s) 126, 453, 530
MboII GAAGA 7 cut(s) 5, 139, 183, 259, 508, 581, 584
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 442
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 267, 508
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 645
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 1 cut(s) 234
MvnI CGCG 1 cut(s) 388
MwoI GCNNNNNNNGC 4 cut(s) 392, 619, 628, 635
NdeII GATC 3 cut(s) 126, 453, 530
NlaIII CATG 2 cut(s) 626, 739
NlaIV GGNNCC 5 cut(s) 260, 293, 294, 321, 493
NspI RCATGY 1 cut(s) 626
PaeI GCATGC 1 cut(s) 626
PcsI WCGNNNNNNNCGW 1 cut(s) 705
PkrI GCNGC 6 cut(s) 213, 385, 508, 628, 640, 727
PpuMI RGGWCCY 1 cut(s) 292
Psp5II RGGWCCY 1 cut(s) 292
PspN4I GGNNCC 5 cut(s) 260, 293, 294, 321, 493
PspPI GGNCC 1 cut(s) 292
PspPPI RGGWCCY 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 725
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 6 cut(s) 212, 384, 507, 627, 639, 726
Sau3AI GATC 3 cut(s) 126, 453, 530
Sau96I GGNCC 1 cut(s) 292
SfaNI GCATC 2 cut(s) 246, 404
SfcI CTRYAG 1 cut(s) 746
SinI GGWCC 1 cut(s) 292
SmlI CTYRAG 2 cut(s) 131, 449
SmoI CTYRAG 2 cut(s) 131, 449
SphI GCATGC 1 cut(s) 626
Sse9I AATT 1 cut(s) 442
SsiI CCGC 5 cut(s) 105, 209, 212, 225, 683
TaaI ACNGT 3 cut(s) 538, 650, 742
TaiI ACGT 1 cut(s) 315
TasI AATT 1 cut(s) 442
TauI GCSGC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TseI GCWGC 5 cut(s) 383, 506, 626, 638, 725
TspDTI ATGAA 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 292
XceI RCATGY 1 cut(s) 626
XmiI GTMKAC 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.