Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Reverse (-)

75999793 .. 76005130

Gene Structure 5338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0652500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGAAGAGGCAAGGAGGCGGGAATAACACAAAAACTCCCTCTCGCTTCTGGCGGTGGAAAATGGTAGTCCAATCGCTGGAGGGCGTGGGTTCCGTTCAGAGCTCCATCGACGTTGCTGCAAACCCACATTCCGAGGACAGTTCCTCGCCGAAGAAGAGGAGAGTCAGCTCTCGCCTCCAGGTCAAGCAGAAACCCCAAAAGGAACTTCTCGTCCGCCAGAGAGTGGAATTACTCGATGACAACGAACAAGGCCCCAGGAAGAAACAAGCAAATGTCAGGGGTAGGCAAACCGGAGAGGTTGCCGACTCGGAGGAGCTCCCAAAGGCCACTGACTCGGTTGAGAAGAGTGACCGTGTTAGGGTCAAAGAGACCCTCAGGTTGTTCAACAAGCATTATCTCTATTTCGTACAGGAAGAAGAGAAGAGGGCGGTGAAAGCAGAAGCTCAGAAGAAAGCTTCCAGAGCTGCAAAGAGAGGTGCAAAAAAATCTAAGAAGGGTGATTTGAAGAAGGCAGATACAAAGGTGGCAAAACGACCTGATTTGAAGGCATTAACCAAGATGAATGACGAAAAAGAAATTTTGTTTCCTTCTAAAAGATTTGGAAGCATTCCAGGTATTGATGTCGGGCATCAGTTCTATTCTCGGGCTGAAATGGTTGCTGTTGGTTTCCACAGCCACTGGCTGAACGGGATTGATTATATGGGCCAGTCCTATAGTAAAGGGAAGTACAGCAACTATACAATGCCACTTGCAGTTGCTATTGTTATATCAGGCATGTATGAAGATGATTTGGACAATGCTGAGGAAGTTGTGTATACTGGTCAAGGTGGACATAATTTGACAGGTGATAAGCGTCAATTTCGAGATCAAGTTCTAGAACGTGGTAATTTGGCACTCAAGAATTGTGTGGAACAAGATGTACCTGTTAGAGTAGTTCGTGGCCATGATTGTAAAAGTAGTTACTGTGGCAAAATTTACACTTATGATGGACTGTACAAGGTTGTGAAGTATTGGGCAGAGAAGGGTATTTCTGGATTTACTGTTTTTAAGTATCGTCTTAAGCGGCTTGAGGGGCAGCCACTGTTAACCACCAACCAGGTTCAATTTATTAATGGACGTGTACCACAATCTATATCAGAAATACGCGGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTACCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAGGTTACACGTATTGCAAATCTATTCAAGTTGCGAAAAACGTGAAGCTTCCCACAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCGAATGTGCCAAACTTAACGGCTCTGACTTTCCGTATGTCCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTTGTGTCAACCGTACTTCTCAGAGGGGGCTTAAGTACCGATTTGAGGTTTTCCGAACGCCCATGAAAGGGTGGGCAGTTAGATCTTGGGATTTTATACCTGCTGGGGCACCAGTTTGTGAGTATGTAGGAATACTTCGCAGGACAGAAGATGTGGATAGTGCCTCGGAGAATTATTACATTTTTGACATTGATTGCTTGCAAACAATGAAGGGGCTTGATGGGAGGGAGAGGCGATCACAAGCTGTATGCATACCAACAGTTAATTCACTGGAGAGGCCTGATGATCAGAGATCTGATAATGTGCCAGAGTACTGCATTGATGCCGGTTCTAATGGAAATATTGCCAGATTTATAAACCACAGTTGTGAGCCTAATCTGTTTGTTCAGTGTGTCTTGAGTTCACACCATGACATCAAACTAGCTCGAGTAATGCTGTTTGCAGCAGACAACATACCTCCTTTGCAGGAGCTGACATATGACTACGGTTATGCCCTTGATAGCGTCTTGGGCCCTGATGGGAAGGTAAAGAAGATGTTTTGCCACTGTGGTGCAGCAGGTTGCAGGAAACGCTTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PsbP

Protein Analysis

678

Amino Acids

75.86

Weight (kDa)

9.03

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	199 - 359	6.2e-52	SAD/SRA domain
Pre-SET	PF05033	392 - 490	2.1e-17	Pre-SET motif
SET	PF00856	509 - 648	6e-20	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1811
Acc36I	ACCTGC	3 cut(s)	1346, 1564, 2003
AccB1I	GGYRCC	1 cut(s)	1564
AccB7I	CCANNNNNTGG	3 cut(s)	76, 223, 1442
AccI	GTMKAC	1 cut(s)	815
AccII	CGCG	1 cut(s)	1146
AciI	CCGC	7 cut(s)	18, 52, 214, 428, 1063, 1146, 1220
AclWI	GGATC	1 cut(s)	1211
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	2 cut(s)	576, 972
AfaI	GTAC	8 cut(s)	408, 728, 921, 995, 1122, 1471, 1493, 1769
AfiI	CCNNNNNNNGG	7 cut(s)	76, 223, 358, 1442, 1501, 1523, 1524
AflII	CTTAAG	2 cut(s)	1058, 1487
AflIII	ACRYGT	2 cut(s)	1117, 1242
AgsI	TTSAA	7 cut(s)	385, 505, 544, 1103, 1262, 1406, 1427
AjiI	CACGTC	1 cut(s)	1118
AjnI	CCWGG	4 cut(s)	177, 254, 610, 1095
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 1705, 1737
AleI	CACNNNNGTG	2 cut(s)	1821, 2004
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
Alw21I	GWGCWC	2 cut(s)	104, 318
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	1211
AlwNI	CAGNNNCTG	3 cut(s)	678, 1081, 1927
Ama87I	CYCGRG	2 cut(s)	642, 1881
AoxI	GGCC	7 cut(s)	250, 324, 703, 940, 1433, 1733, 1966
ApaI	GGGCCC	1 cut(s)	1970
ApeKI	GCWGC	5 cut(s)	116, 464, 1075, 1898, 2009
ApoI	RAATTY	2 cut(s)	576, 972
AseI	ATTAAT	2 cut(s)	1110, 1400
AspS9I	GGNCC	6 cut(s)	251, 703, 1433, 1451, 1966, 1967
AsuHPI	GGTGA	3 cut(s)	442, 509, 857
AvaI	CYCGRG	2 cut(s)	642, 1881
AvaII	GGWCC	1 cut(s)	1451
AxyI	CCTNAGG	1 cut(s)	374
BaeGI	GKGCMC	2 cut(s)	1567, 1970
BaeI	ACNNNNGTAYC	2 cut(s)	507, 540
BalI	TGGCCA	1 cut(s)	942
BanI	GGYRCC	1 cut(s)	1564
BanII	GRGCYC	3 cut(s)	104, 318, 1970
BarI	GAAGNNNNNNTAC	2 cut(s)	1575, 1607
Bbv12I	GWGCWC	2 cut(s)	104, 318
BbvCI	CCTCAGC	1 cut(s)	801
BbvI	GCAGC	5 cut(s)	103, 451, 1087, 1910, 2021
BccI	CCATC	5 cut(s)	113, 980, 1382, 1670, 1967
BceAI	ACGGC	1 cut(s)	1375
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	4 cut(s)	179, 256, 612, 1097
BclI	TGATCA	1 cut(s)	1741
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	4 cut(s)	875, 1178, 1877, 2035
BfmI	CTRYAG	2 cut(s)	712, 1233
BfrI	CTTAAG	2 cut(s)	1058, 1487
BfuAI	ACCTGC	3 cut(s)	1346, 1564, 2003
BglII	AGATCT	2 cut(s)	1538, 1748
BisI	GCNGC	6 cut(s)	117, 465, 1064, 1076, 1899, 2010
BlsI	GCNGC	6 cut(s)	118, 466, 1065, 1077, 1900, 2011
BmcAI	AGTACT	1 cut(s)	1769
Bme1390I	CCNGG	4 cut(s)	179, 256, 612, 1097
Bme18I	GGWCC	1 cut(s)	1451
BmeT110I	CYCGRG	2 cut(s)	642, 1881
BmgBI	CACGTC	1 cut(s)	1118
BmgT120I	GGNCC	6 cut(s)	251, 703, 1433, 1451, 1966, 1967
BmiI	GGNNCC	4 cut(s)	91, 253, 1566, 1968
BmrFI	CCNGG	4 cut(s)	179, 256, 612, 1097
BmrI	ACTGGG	1 cut(s)	1179
BmsI	GCATC	4 cut(s)	637, 1282, 1292, 1768
BmuI	ACTGGG	1 cut(s)	1179
BpmI	CTGGAG	3 cut(s)	98, 161, 1748
Bpu10I	CCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	3 cut(s)	881, 1088, 1873
BsaAI	YACGTR	1 cut(s)	1245
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	132, 254, 1410, 1620
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	7 cut(s)	76, 223, 358, 1442, 1501, 1523, 1524
Bse118I	RCCGGY	1 cut(s)	1781
Bse1I	ACTGG	7 cut(s)	683, 706, 823, 1174, 1303, 1568, 1731
Bse21I	CCTNAGG	1 cut(s)	374
BseBI	CCWGG	4 cut(s)	179, 256, 612, 1097
BseDI	CCNNGG	4 cut(s)	132, 254, 1410, 1620
BseGI	GGATG	2 cut(s)	1307, 1420
BseLI	CCNNNNNNNGG	7 cut(s)	76, 223, 358, 1442, 1501, 1523, 1524
BseMII	CTCAG	4 cut(s)	388, 458, 792, 1490
BseNI	ACTGG	7 cut(s)	683, 706, 823, 1174, 1303, 1568, 1731
BseRI	GAGGAG	2 cut(s)	172, 326
BseSI	GKGCMC	2 cut(s)	1567, 1970
BseXI	GCAGC	5 cut(s)	103, 451, 1087, 1910, 2021
BseYI	CCCAGC	1 cut(s)	1559
BsgI	GTGCAG	1 cut(s)	2028
Bsh1236I	CGCG	1 cut(s)	1146
BshFI	GGCC	7 cut(s)	252, 326, 705, 942, 1435, 1735, 1968
BshNI	GGYRCC	1 cut(s)	1564
BsiHKAI	GWGCWC	2 cut(s)	104, 318
BsiHKCI	CYCGRG	2 cut(s)	642, 1881
BsiSI	CCGG	2 cut(s)	291, 1782
BslI	CCNNNNNNNGG	7 cut(s)	76, 223, 358, 1442, 1501, 1523, 1524
BsmAI	GTCTC	1 cut(s)	362
BsmI	GAATGC	1 cut(s)	606
BsnI	GGCC	7 cut(s)	252, 326, 705, 942, 1435, 1735, 1968
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	642, 1881
Bsp120I	GGGCCC	1 cut(s)	1966
Bsp1286I	GDGCHC	4 cut(s)	104, 318, 1567, 1970
Bsp1407I	TGTACA	1 cut(s)	993
Bsp143I	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
BspACI	CCGC	7 cut(s)	18, 52, 214, 428, 1063, 1146, 1220
BspANI	GGCC	7 cut(s)	252, 326, 705, 942, 1435, 1735, 1968
BspCNI	CTCAG	4 cut(s)	387, 457, 793, 1489
BspFNI	CGCG	1 cut(s)	1146
BspLI	GGNNCC	4 cut(s)	91, 253, 1566, 1968
BspMI	ACCTGC	3 cut(s)	1346, 1564, 2003
BspPI	GGATC	1 cut(s)	1211
BspT107I	GGYRCC	1 cut(s)	1564
BspTI	CTTAAG	2 cut(s)	1058, 1487
BspTNI	GGTCTC	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	1781
BsrGI	TGTACA	1 cut(s)	993
BsrI	ACTGG	7 cut(s)	683, 706, 823, 1174, 1303, 1568, 1731
BssAI	RCCGGY	1 cut(s)	1781
BssECI	CCNNGG	4 cut(s)	132, 254, 1410, 1620
BssMI	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
BssNAI	GTATAC	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	1410
Bst1107I	GTATAC	1 cut(s)	816
Bst2UI	CCWGG	4 cut(s)	179, 256, 612, 1097
Bst6I	CTCTTC	4 cut(s)	149, 338, 411, 416
BstAFI	CTTAAG	2 cut(s)	1058, 1487
BstAUI	TGTACA	1 cut(s)	993
BstBAI	YACGTR	1 cut(s)	1245
BstC8I	GCNNGC	1 cut(s)	1655
BstDEI	CTNAG	5 cut(s)	374, 444, 489, 801, 1476
BstF5I	GGATG	2 cut(s)	1307, 1420
BstFNI	CGCG	1 cut(s)	1146
BstKTI	GATC	6 cut(s)	868, 1219, 1541, 1694, 1744, 1751
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
BstMWI	GCNNNNNNNGC	6 cut(s)	434, 461, 1072, 1196, 1965, 2025
BstNI	CCWGG	4 cut(s)	179, 256, 612, 1097
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	4 cut(s)	177, 254, 610, 1095
BstSFI	CTRYAG	2 cut(s)	712, 1233
BstSLI	GKGCMC	2 cut(s)	1567, 1970
BstUI	CGCG	1 cut(s)	1146
BstV1I	GCAGC	5 cut(s)	103, 451, 1087, 1910, 2021
BstX2I	RGATCY	2 cut(s)	1538, 1748
BstXI	CCANNNNNNTGG	1 cut(s)	1388
BstYI	RGATCY	2 cut(s)	1538, 1748
BstZ17I	GTATAC	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	374
BsuRI	GGCC	7 cut(s)	252, 326, 705, 942, 1435, 1735, 1968
BtrI	CACGTC	1 cut(s)	1118
BtsCI	GGATG	2 cut(s)	1307, 1420
BtsIMutI	CAGTG	7 cut(s)	327, 676, 1079, 1296, 1724, 1850, 1999
BveI	ACCTGC	3 cut(s)	1346, 1564, 2003
Cac8I	GCNNGC	1 cut(s)	1655
CaiI	CAGNNNCTG	3 cut(s)	678, 1081, 1927
Cfr10I	RCCGGY	1 cut(s)	1781
Cfr13I	GGNCC	6 cut(s)	251, 703, 1433, 1451, 1966, 1967
CseI	GACGC	2 cut(s)	842, 1948
CsiI	ACCWGGT	1 cut(s)	1095
Csp6I	GTAC	8 cut(s)	407, 727, 920, 994, 1121, 1470, 1492, 1768
CviAII	CATG	4 cut(s)	775, 944, 1519, 1865
CviQI	GTAC	8 cut(s)	407, 727, 920, 994, 1121, 1470, 1492, 1768
DdeI	CTNAG	5 cut(s)	374, 444, 489, 801, 1476
DpnI	GATC	6 cut(s)	867, 1218, 1540, 1693, 1743, 1750
DpnII	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	4 cut(s)	149, 338, 411, 416
EarI	CTCTTC	4 cut(s)	149, 338, 411, 416
EciI	GGCGGA	2 cut(s)	203, 1209
Ecl136II	GAGCTC	2 cut(s)	102, 316
Eco130I	CCWWGG	1 cut(s)	1410
Eco147I	AGGCCT	1 cut(s)	1735
Eco24I	GRGCYC	3 cut(s)	104, 318, 1970
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	1451
Eco53kI	GAGCTC	2 cut(s)	102, 316
Eco81I	CCTNAGG	1 cut(s)	374
Eco88I	CYCGRG	2 cut(s)	642, 1881
EcoICRI	GAGCTC	2 cut(s)	102, 316
EcoO109I	RGGNCCY	2 cut(s)	251, 1967
EcoRII	CCWGG	4 cut(s)	177, 254, 610, 1095
EcoT14I	CCWWGG	1 cut(s)	1410
EcoT22I	ATGCAT	1 cut(s)	1709
EcoT38I	GRGCYC	3 cut(s)	104, 318, 1970
ErhI	CCWWGG	1 cut(s)	1410
FaeI	CATG	4 cut(s)	778, 947, 1522, 1868
FatI	CATG	4 cut(s)	774, 943, 1518, 1864
FauI	CCCGC	2 cut(s)	11, 1139
FauNDI	CATATG	1 cut(s)	1933
FbaI	TGATCA	1 cut(s)	1741
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	6 cut(s)	117, 465, 1064, 1076, 1899, 2010
FokI	GGATG	2 cut(s)	1314, 1427
FriOI	GRGCYC	3 cut(s)	104, 318, 1970
Fsp4HI	GCNGC	6 cut(s)	117, 465, 1064, 1076, 1899, 2010
FspBI	CTAG	4 cut(s)	875, 1178, 1877, 2035
GluI	GCNGC	6 cut(s)	117, 465, 1064, 1076, 1899, 2010
GsaI	CCCAGC	1 cut(s)	1563
GsuI	CTGGAG	3 cut(s)	98, 161, 1748
HaeIII	GGCC	7 cut(s)	252, 326, 705, 942, 1435, 1735, 1968
HapII	CCGG	2 cut(s)	291, 1782
HgaI	GACGC	2 cut(s)	842, 1948
Hin1II	CATG	4 cut(s)	778, 947, 1522, 1868
HincII	GTYRAC	2 cut(s)	1086, 1465
HindII	GTYRAC	2 cut(s)	1086, 1465
HindIII	AAGCTT	2 cut(s)	453, 1280
HinfI	GANTC	4 cut(s)	162, 305, 332, 1328
HpaI	GTTAAC	1 cut(s)	1086
HpaII	CCGG	2 cut(s)	291, 1782
HphI	GGTGA	3 cut(s)	442, 509, 857
Hpy166II	GTNNAC	8 cut(s)	816, 830, 1086, 1121, 1381, 1451, 1465, 1859
Hpy188III	TCNNGA	7 cut(s)	459, 863, 875, 898, 1032, 1178, 1852
Hpy8I	GTNNAC	8 cut(s)	816, 830, 1086, 1121, 1381, 1451, 1465, 1859
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	8 cut(s)	487, 502, 538, 597, 1015, 1464, 1660, 1972
HpyCH4IV	ACGT	5 cut(s)	111, 880, 1117, 1244, 1275
HpyF10VI	GCNNNNNNNGC	6 cut(s)	434, 461, 1072, 1196, 1965, 2025
HpyF3I	CTNAG	5 cut(s)	374, 444, 489, 801, 1476
HpySE526I	ACGT	5 cut(s)	111, 880, 1117, 1244, 1275
Hsp92II	CATG	4 cut(s)	778, 947, 1522, 1868
Ksp22I	TGATCA	1 cut(s)	1741
KspAI	GTTAAC	1 cut(s)	1086
Kzo9I	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
LmnI	GCTCC	5 cut(s)	107, 313, 321, 1234, 1924
Lsp1109I	GCAGC	5 cut(s)	103, 451, 1087, 1910, 2021
LweI	GCATC	4 cut(s)	637, 1282, 1292, 1768
MabI	ACCWGGT	1 cut(s)	1095
MaeI	CTAG	4 cut(s)	875, 1178, 1877, 2035
MaeII	ACGT	5 cut(s)	111, 880, 1117, 1244, 1275
MaeIII	GTNAC	3 cut(s)	347, 959, 1238
MalI	GATC	6 cut(s)	867, 1218, 1540, 1693, 1743, 1750
MboI	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
MfeI	CAATTG	1 cut(s)	1306
MflI	RGATCY	2 cut(s)	1538, 1748
MhlI	GDGCHC	4 cut(s)	104, 318, 1567, 1970
MlsI	TGGCCA	1 cut(s)	942
MluNI	TGGCCA	1 cut(s)	942
MlyI	GAGTC	3 cut(s)	171, 299, 326
Mox20I	TGGCCA	1 cut(s)	942
Mph1103I	ATGCAT	1 cut(s)	1709
MscI	TGGCCA	1 cut(s)	942
MseI	TTAA	9 cut(s)	551, 1047, 1059, 1085, 1110, 1356, 1400, 1488, 1719
MslI	CAYNNNNRTG	3 cut(s)	1386, 1821, 2004
Msp20I	TGGCCA	1 cut(s)	942
MspCI	CTTAAG	2 cut(s)	1058, 1487
MspI	CCGG	2 cut(s)	291, 1782
MspR9I	CCNGG	4 cut(s)	179, 256, 612, 1097
MunI	CAATTG	1 cut(s)	1306
Mva1269I	GAATGC	1 cut(s)	606
MvaI	CCWGG	4 cut(s)	179, 256, 612, 1097
MvnI	CGCG	1 cut(s)	1146
MwoI	GCNNNNNNNGC	6 cut(s)	434, 461, 1072, 1196, 1965, 2025
NdeI	CATATG	1 cut(s)	1933
NdeII	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
NlaIII	CATG	4 cut(s)	778, 947, 1522, 1868
NlaIV	GGNNCC	4 cut(s)	91, 253, 1566, 1968
NmuCI	GTSAC	1 cut(s)	347
NsiI	ATGCAT	1 cut(s)	1709
NspI	RCATGY	1 cut(s)	778
OliI	CACNNNNGTG	2 cut(s)	1821, 2004
PaeR7I	CTCGAG	1 cut(s)	1881
PceI	AGGCCT	1 cut(s)	1735
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	1 cut(s)	606
PfeI	GAWTC	1 cut(s)	1328
PflMI	CCANNNNNTGG	3 cut(s)	76, 223, 1442
PkrI	GCNGC	6 cut(s)	118, 466, 1065, 1077, 1900, 2011
PleI	GAGTC	3 cut(s)	170, 299, 326
PpsI	GAGTC	3 cut(s)	170, 299, 326
Ppu21I	YACGTR	1 cut(s)	1245
PshBI	ATTAAT	2 cut(s)	1110, 1400
PsiI	TTATAA	1 cut(s)	1811
Psp124BI	GAGCTC	2 cut(s)	104, 318
Psp6I	CCWGG	4 cut(s)	177, 254, 610, 1095
PspFI	CCCAGC	1 cut(s)	1559
PspGI	CCWGG	4 cut(s)	177, 254, 610, 1095
PspN4I	GGNNCC	4 cut(s)	91, 253, 1566, 1968
PspOMI	GGGCCC	1 cut(s)	1966
PspPI	GGNCC	6 cut(s)	251, 703, 1433, 1451, 1966, 1967
PspXI	VCTCGAGB	1 cut(s)	1881
PsrI	GAACNNNNNNTAC	2 cut(s)	903, 935
PstNI	CAGNNNCTG	3 cut(s)	678, 1081, 1927
PsuI	RGATCY	2 cut(s)	1538, 1748
RsaI	GTAC	8 cut(s)	408, 728, 921, 995, 1122, 1471, 1493, 1769
RsaNI	GTAC	8 cut(s)	407, 727, 920, 994, 1121, 1470, 1492, 1768
RseI	CAYNNNNRTG	3 cut(s)	1386, 1821, 2004
SacI	GAGCTC	2 cut(s)	104, 318
SaqAI	TTAA	9 cut(s)	551, 1047, 1059, 1085, 1110, 1356, 1400, 1488, 1719
SatI	GCNGC	6 cut(s)	117, 465, 1064, 1076, 1899, 2010
Sau3AI	GATC	6 cut(s)	865, 1216, 1538, 1691, 1741, 1748
Sau96I	GGNCC	6 cut(s)	251, 703, 1433, 1451, 1966, 1967
ScaI	AGTACT	1 cut(s)	1769
SchI	GAGTC	3 cut(s)	171, 299, 326
ScrFI	CCNGG	4 cut(s)	179, 256, 612, 1097
SduI	GDGCHC	4 cut(s)	104, 318, 1567, 1970
SexAI	ACCWGGT	1 cut(s)	1095
SfaNI	GCATC	4 cut(s)	637, 1282, 1292, 1768
SfcI	CTRYAG	2 cut(s)	712, 1233
Sfr274I	CTCGAG	1 cut(s)	1881
SinI	GGWCC	1 cut(s)	1451
SlaI	CTCGAG	1 cut(s)	1881
SmiMI	CAYNNNNRTG	3 cut(s)	1386, 1821, 2004
SmlI	CTYRAG	6 cut(s)	896, 1058, 1067, 1487, 1852, 1881
SmoI	CTYRAG	6 cut(s)	896, 1058, 1067, 1487, 1852, 1881
SseBI	AGGCCT	1 cut(s)	1735
SsiI	CCGC	7 cut(s)	18, 52, 214, 428, 1063, 1146, 1220
SspI	AATATT	1 cut(s)	1798
SspMI	CTAG	4 cut(s)	875, 1178, 1877, 2035
SstI	GAGCTC	2 cut(s)	104, 318
StuI	AGGCCT	1 cut(s)	1735
StyD4I	CCNGG	4 cut(s)	177, 254, 610, 1095
StyI	CCWWGG	1 cut(s)	1410
TaiI	ACGT	5 cut(s)	114, 883, 1120, 1247, 1278
TaqI	TCGA	5 cut(s)	108, 234, 862, 1212, 1882
TatI	WGTACW	3 cut(s)	726, 993, 1767
TauI	GCSGC	1 cut(s)	1066
TfiI	GAWTC	1 cut(s)	1328
Tru1I	TTAA	9 cut(s)	551, 1047, 1059, 1085, 1110, 1356, 1400, 1488, 1719
Tru9I	TTAA	9 cut(s)	551, 1047, 1059, 1085, 1110, 1356, 1400, 1488, 1719
TscAI	CASTG	7 cut(s)	334, 683, 1086, 1303, 1731, 1850, 2006
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	5 cut(s)	116, 464, 1075, 1898, 2009
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	5 cut(s)	17, 575, 795, 1535, 1679
TspGWI	ACGGA	2 cut(s)	82, 1362
TspRI	CASTG	7 cut(s)	334, 683, 1086, 1303, 1731, 1850, 2006
Van91I	CCANNNNNTGG	3 cut(s)	76, 223, 1442
Vha464I	CTTAAG	2 cut(s)	1058, 1487
VpaK11BI	GGWCC	1 cut(s)	1451
VspI	ATTAAT	2 cut(s)	1110, 1400
XapI	RAATTY	2 cut(s)	576, 972
XbaI	TCTAGA	2 cut(s)	874, 1177
XceI	RCATGY	1 cut(s)	778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1388
XhoI	CTCGAG	1 cut(s)	1881
XmiI	GTMKAC	1 cut(s)	815
XspI	CTAG	4 cut(s)	875, 1178, 1877, 2035
ZrmI	AGTACT	1 cut(s)	1769
Zsp2I	ATGCAT	1 cut(s)	1709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.