Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003084

Physical Location & Seq

Genomic Coordinates Forward (+)

62332945 .. 62336988

Gene Structure 4044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG369000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCAGAACTATATGATTTCGCAAAGAACTTAGCTCATGACCATGCTCAGGTGGTACCAATCTCACTTTTTGTGGCGGTTCTCTGTATTTGCTTAGTCGTCGGACACTTGCTTGAAGAAAATCGATGGGTTAATGAATCCATTACCGCCATTTTCATCGGACTGCTAACTGGGATCATAATCTTGCTCGTGAGCAAGTGGAAAAGTTCTCACATTCTGACATTTAATGAAGAGTTGTTCTTTATATATCTCCTGCCGCCTATTATATTTAATGCCGGGTTTCAGGTCAAGAAGAAACAGTTCTTTCAAAATTTCTTAACTATCATGTTGTTTGGGGTGATTGGCGTTTTCATTTCAACGTTAGTCATAACAGCTGGTGCCTGGTTCCTATTTCCTAAGTCGGGCTTCGTTGGTCTGAACGCACGAGACTATCTCGCTGTAGGAACAATATTTTCATCAACTGATACAGTCTGTACACTGCAGGTTCTTCATCAAGATGAAACTCCTTTACTGTACAGCTTAGTCTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTCCTATTCAATGCAGTTCAGAAGATTGATGTTAATAAGCTTAATAGCGGGATTGGACTGCGTGTCATTGGGGATTTCCTTTACCTGTTCTCAACAAGCACTGCTCTTGGAGTTGCATTCGGACTTGTGACTGCATATTCCCTTAAAACCTTATGCTTTGGAAGGCATTCAAGCATTCGGGAGGTTTCTTTAGTGGTTCTAATGGCCTATCTGTCTTACATGGTGGCTGAGCTGTTAGACCAGAGTGGAATCCTCACTGTTTTCTTCTGTGGGATTGTCATGTCACACTATGCTTGGCATAATGTCACTGAAAGTTCAAGAATCACAACCAGGCATGTATTTGCAATGATGTCATTTATTGCAGAAACATTCATATTTCTTTATGTCGGAATGGATGCTCTTGACATTGAGAAGTGGAAATTAACCAAGTTGAGTTTTGGGGCTTCAATGGGCATCTATAGTATGACACTCTTACTAATATTGCTTGGACGTGCTGCCTTTGTATTCCCTCTCTCTGCATTCTCCAATTACATGAATAGACGAGCCTCGAGAAGATGTTCACTTTCATTCAGACACCAGATAATCATATGGTGGGCTGGGCTAATAAGAGGAGCTGTCTCCATTGCTTTGGCTTTCAAACAGGCATGTGTACCTCTTTCTATTACACAGATATACTTGAATGTAATTACTTTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0034220 GO:0035725 GO:0042592 GO:0044464 GO:0046873 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

419

Amino Acids

46.71

Weight (kDa)

8.6

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	26 - 399	6e-51	Sodium/hydrogen exchanger, transmembrane

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003084)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55470
fragaria_vesca	FvH4_3g30310 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300 FvH4_6g05300
malus_domestica	MD04G1209700.v1.1 MD11G1207200.v1.1 MD12G1224200.v1.1
prunus_persica	Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.4G228200_v2.0.a1 Prupe.6G330600_v2.0.a1
pyrus_communis	pycom04g18580 pycom12g20970
rosa_chinensis	RchiOBHm_Chr3g0454041 RchiOBHm_Chr5g0056181
rosa_laevigata	RLG00000025487 RLG00000035061
rosa_multiflora	Rmu_sc0000680.1_g000026
rosa_roxburghii	Rroxscaffold_1G00024110 Rroxscaffold_6G00430830
rosa_rugosa	Rorug02G0652500 Rorug05G0297800
rosa_samantha	Rh3AG055200 Rh3BG056800 Rh3CG056000 Rh3DG057300 Rh5AG369000 Rh5BG380000 Rh5CG402800 Rh5DG393000
rosa_wichuraiana	Rw0G004440 Rw0G012680 Rw3G004240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
Acc65I	GGTACC	1 cut(s)	55
AccB1I	GGYRCC	2 cut(s)	55, 377
AciI	CCGC	4 cut(s)	77, 147, 257, 609
AclI	AACGTT	1 cut(s)	359
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	4 cut(s)	57, 475, 515, 1212
AfiI	CCNNNNNNNGG	2 cut(s)	49, 401
AgsI	TTSAA	9 cut(s)	116, 308, 357, 571, 732, 879, 1008, 1198, 1240
AhdI	GACNNNNNGTC	1 cut(s)	623
AjiI	CACGTC	1 cut(s)	1052
AjnI	CCWGG	2 cut(s)	380, 890
AluBI	AGCT	6 cut(s)	35, 374, 519, 601, 793, 1175
AluI	AGCT	6 cut(s)	35, 374, 519, 601, 793, 1175
Alw26I	GTCTC	2 cut(s)	420, 1183
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	1108
AoxI	GGCC	1 cut(s)	765
ApeKI	GCWGC	1 cut(s)	1055
ApoI	RAATTY	1 cut(s)	310
Asp700I	GAANNNNTTC	3 cut(s)	299, 727, 1117
Asp718I	GGTACC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	349, 553
AvaI	CYCGRG	1 cut(s)	1108
BanI	GGYRCC	2 cut(s)	55, 377
BauI	CACGAG	2 cut(s)	188, 423
BbvI	GCAGC	1 cut(s)	1042
BccI	CCATC	1 cut(s)	120
BciT130I	CCWGG	2 cut(s)	382, 892
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	420, 1183
BfmI	CTRYAG	3 cut(s)	438, 479, 1018
BfuAI	ACCTGC	1 cut(s)	472
BisI	GCNGC	2 cut(s)	257, 1056
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	2 cut(s)	258, 1057
Bme1390I	CCNGG	3 cut(s)	277, 382, 892
BmeRI	GACNNNNNGTC	1 cut(s)	623
BmeT110I	CYCGRG	1 cut(s)	1108
BmgBI	CACGTC	1 cut(s)	1052
BmiI	GGNNCC	3 cut(s)	57, 379, 386
BmrFI	CCNGG	3 cut(s)	277, 382, 892
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	3 cut(s)	538, 946, 1023
BmuI	ACTGGG	1 cut(s)	180
BplI	GAGNNNNNCTC	2 cut(s)	417, 449
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuMI	CCSGG	1 cut(s)	277
Bsa29I	ATCGAT	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 401
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	912, 1182
Bse8I	GATNNNNATC	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	382, 892
BseCI	ATCGAT	1 cut(s)	124
BseGI	GGATG	1 cut(s)	961
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	49, 401
BseMI	GCAATG	2 cut(s)	912, 1182
BseMII	CTCAG	2 cut(s)	62, 780
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	1185
BseXI	GCAGC	1 cut(s)	1042
BseYI	CCCAGC	1 cut(s)	1157
BshFI	GGCC	1 cut(s)	767
BshNI	GGYRCC	2 cut(s)	55, 377
BshVI	ATCGAT	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	1108
BsiSI	CCGG	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	49, 401
BsmAI	GTCTC	2 cut(s)	420, 1183
BsmI	GAATGC	4 cut(s)	677, 727, 735, 1079
BsnI	GGCC	1 cut(s)	767
BsoBI	CYCGRG	1 cut(s)	1108
Bsp1407I	TGTACA	2 cut(s)	473, 513
Bsp143I	GATC	1 cut(s)	174
Bsp1720I	GCTNAGC	1 cut(s)	789
BspACI	CCGC	4 cut(s)	77, 147, 257, 609
BspANI	GGCC	1 cut(s)	767
BspCNI	CTCAG	2 cut(s)	61, 781
BspDI	ATCGAT	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	3 cut(s)	57, 379, 386
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	2 cut(s)	55, 377
BsrDI	GCAATG	2 cut(s)	912, 1182
BsrGI	TGTACA	2 cut(s)	473, 513
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	1 cut(s)	174
BssSI	CACGAG	2 cut(s)	188, 423
Bst2BI	CACGAG	2 cut(s)	188, 423
Bst2UI	CCWGG	2 cut(s)	382, 892
Bst4CI	ACNGT	4 cut(s)	300, 469, 513, 820
Bst6I	CTCTTC	1 cut(s)	225
BstAUI	TGTACA	2 cut(s)	473, 513
BstDEI	CTNAG	6 cut(s)	31, 48, 94, 396, 520, 789
BstF5I	GGATG	1 cut(s)	961
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	2 cut(s)	420, 1183
BstMBI	GATC	1 cut(s)	174
BstNI	CCWGG	2 cut(s)	382, 892
BstNSI	RCATGY	2 cut(s)	899, 1209
BstSCI	CCNGG	3 cut(s)	275, 380, 890
BstSFI	CTRYAG	3 cut(s)	438, 479, 1018
BstV1I	GCAGC	1 cut(s)	1042
BstXI	CCANNNNNNTGG	1 cut(s)	1189
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	767
BsuTUI	ATCGAT	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	1052
BtsCI	GGATG	1 cut(s)	961
BtsI	GCAGTG	2 cut(s)	476, 660
BtsIMutI	CAGTG	4 cut(s)	476, 660, 816, 867
BveI	ACCTGC	1 cut(s)	472
CciI	TCATGA	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	4 cut(s)	56, 474, 514, 1211
CviAII	CATG	8 cut(s)	38, 44, 325, 781, 841, 896, 1093, 1206
CviQI	GTAC	4 cut(s)	56, 474, 514, 1211
DdeI	CTNAG	6 cut(s)	31, 48, 94, 396, 520, 789
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DriI	GACNNNNNGTC	1 cut(s)	623
Eam1104I	CTCTTC	1 cut(s)	225
Eam1105I	GACNNNNNGTC	1 cut(s)	623
EarI	CTCTTC	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	1108
EcoRII	CCWGG	2 cut(s)	380, 890
FaeI	CATG	8 cut(s)	41, 47, 328, 784, 844, 899, 1096, 1209
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	8 cut(s)	37, 43, 324, 780, 840, 895, 1092, 1205
FauI	CCCGC	1 cut(s)	602
FauNDI	CATATG	1 cut(s)	1148
Fnu4HI	GCNGC	2 cut(s)	257, 1056
FokI	GGATG	1 cut(s)	968
Fsp4HI	GCNGC	2 cut(s)	257, 1056
GluI	GCNGC	2 cut(s)	257, 1056
GsaI	CCCAGC	1 cut(s)	1161
HaeIII	GGCC	1 cut(s)	767
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	8 cut(s)	41, 47, 328, 784, 844, 899, 1096, 1209
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	3 cut(s)	137, 810, 882
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	349, 553
Hpy166II	GTNNAC	3 cut(s)	476, 1121, 1211
Hpy188I	TCNGA	8 cut(s)	104, 161, 219, 417, 582, 683, 950, 1133
Hpy188III	TCNNGA	8 cut(s)	38, 190, 289, 494, 740, 879, 962, 1110
Hpy8I	GTNNAC	3 cut(s)	476, 1121, 1211
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	527, 717
HpyCH4III	ACNGT	4 cut(s)	300, 469, 513, 820
HpyCH4IV	ACGT	2 cut(s)	359, 1051
HpyCH4V	TGCA	8 cut(s)	481, 551, 575, 677, 695, 905, 923, 1079
HpyF3I	CTNAG	6 cut(s)	31, 48, 94, 396, 520, 789
HpySE526I	ACGT	2 cut(s)	359, 1051
Hsp92II	CATG	8 cut(s)	41, 47, 328, 784, 844, 899, 1096, 1209
KpnI	GGTACC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	1172
Lsp1109I	GCAGC	1 cut(s)	1042
LweI	GCATC	3 cut(s)	538, 946, 1023
MaeII	ACGT	2 cut(s)	359, 1051
MaeIII	GTNAC	3 cut(s)	688, 843, 865
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	7 cut(s)	128, 242, 304, 479, 595, 817, 1125
MluCI	AATT	4 cut(s)	310, 980, 1087, 1245
MmeI	TCCRAC	2 cut(s)	82, 928
MnlI	CCTC	6 cut(s)	736, 824, 1080, 1117, 1163, 1224
MroXI	GAANNNNTTC	3 cut(s)	299, 727, 1117
MseI	TTAA	9 cut(s)	132, 225, 270, 317, 594, 603, 705, 983, 1253
MslI	CAYNNNNRTG	2 cut(s)	42, 495
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	3 cut(s)	277, 382, 892
Mva1269I	GAATGC	4 cut(s)	677, 727, 735, 1079
MvaI	CCWGG	2 cut(s)	382, 892
NciI	CCSGG	1 cut(s)	277
NdeI	CATATG	1 cut(s)	1148
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	8 cut(s)	41, 47, 328, 784, 844, 899, 1096, 1209
NlaIV	GGNNCC	3 cut(s)	57, 379, 386
NmuCI	GTSAC	3 cut(s)	688, 843, 865
NspI	RCATGY	2 cut(s)	899, 1209
PaeR7I	CTCGAG	1 cut(s)	1108
PagI	TCATGA	1 cut(s)	37
PctI	GAATGC	4 cut(s)	677, 727, 735, 1079
PdmI	GAANNNNTTC	3 cut(s)	299, 727, 1117
PfeI	GAWTC	3 cut(s)	137, 810, 882
PkrI	GCNGC	2 cut(s)	258, 1057
Psp1406I	AACGTT	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	380, 890
PspFI	CCCAGC	1 cut(s)	1157
PspGI	CCWGG	2 cut(s)	380, 890
PspN4I	GGNNCC	3 cut(s)	57, 379, 386
PstI	CTGCAG	1 cut(s)	483
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	4 cut(s)	57, 475, 515, 1212
RsaNI	GTAC	4 cut(s)	56, 474, 514, 1211
RseI	CAYNNNNRTG	2 cut(s)	42, 495
SaqAI	TTAA	9 cut(s)	132, 225, 270, 317, 594, 603, 705, 983, 1253
SatI	GCNGC	2 cut(s)	257, 1056
Sau3AI	GATC	1 cut(s)	174
ScrFI	CCNGG	3 cut(s)	277, 382, 892
SfaNI	GCATC	3 cut(s)	538, 946, 1023
SfcI	CTRYAG	3 cut(s)	438, 479, 1018
Sfr274I	CTCGAG	1 cut(s)	1108
SlaI	CTCGAG	1 cut(s)	1108
SmiMI	CAYNNNNRTG	2 cut(s)	42, 495
SmlI	CTYRAG	1 cut(s)	1108
SmoI	CTYRAG	1 cut(s)	1108
Sse9I	AATT	4 cut(s)	310, 980, 1087, 1245
SsiI	CCGC	4 cut(s)	77, 147, 257, 609
SspI	AATATT	2 cut(s)	450, 1041
StyD4I	CCNGG	3 cut(s)	275, 380, 890
TaaI	ACNGT	4 cut(s)	300, 469, 513, 820
TaiI	ACGT	2 cut(s)	362, 1054
TaqI	TCGA	2 cut(s)	124, 1109
TasI	AATT	4 cut(s)	310, 980, 1087, 1245
TatI	WGTACW	2 cut(s)	473, 513
TauI	GCSGC	1 cut(s)	259
TfiI	GAWTC	3 cut(s)	137, 810, 882
Tru1I	TTAA	9 cut(s)	132, 225, 270, 317, 594, 603, 705, 983, 1253
Tru9I	TTAA	9 cut(s)	132, 225, 270, 317, 594, 603, 705, 983, 1253
TscAI	CASTG	4 cut(s)	483, 667, 823, 874
TseFI	GTSAC	3 cut(s)	688, 843, 865
TseI	GCWGC	1 cut(s)	1055
Tsp45I	GTSAC	3 cut(s)	688, 843, 865
TspRI	CASTG	4 cut(s)	483, 667, 823, 874
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	2 cut(s)	899, 1209
XhoI	CTCGAG	1 cut(s)	1108
XmnI	GAANNNNTTC	3 cut(s)	299, 727, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.